Log in
Main
BLAST
HMM
Mobilomics
Literature
Data submission
Subscribe
Contact
GyDB People
Search
Search mode:
Mobile elements
All contents
Main
Intro
----
SUPERFAMILIES
Retroelements
SYSTEMS
LTR retroelements
GIN/GINGER TRs and INTs
FAMILIES
Ty3/Gypsy
Retroviridae
Bel/Pao
Caulimoviridae
Ty1/Copia
GINA
GINGER1
GINGER2
GINNY
GINO
IS3/IS481-like
TDD
CIN-1
CLASSIFIED ELEMENTS
Elements
----
RELATED FAMILIES
Clan AA
Chromodomains
CGIN1
FOB1
GIN-1
GIN-2
SCAN/KRAB
----
DOMAINS
LTRs and TIRs
Gag
Protease
Reverse Transcriptase
Ribonuclease H
Integrase
Envelope
Transposase
SCAN
KRAB
hATd
Retr. chromodomains
dUTPase
Accessory genes
ATF
MOV
VAP
TAV
----
TREES AND NETWORKS
Phylogenetic trees
Clan AA Ref. DB
GyDB COLLECTION
Multiple alignments
HMM Profiles
MRC sequences
REFSEQ DATABASES
Cores Seq. DB
Genome Seq. DB
LTRs and TIRs Seq. DB
TOOLS
CheckAlign 2
----
LINKS OF INTEREST
ACLAME
Bergman Lab site
dbRIP
DengueDB
DPVweb
EBI Genomes
ENSEMBL
euHCVdb
HCV Databases
HERVd
HIV Databases
ICTV
Influenza Virus Database
Influenza Virus Resource
MEROPS
Mobile DNA
Mobile Genetic Elements
Mobile Group II introns DB
NCBI
PBmice
PBR
PFAM
Plant Repeat DB
Repbase
Retrobase
Retroviruses
RNA virus DB
SARS-CoV RNA SSS
TISdb
Tree of Life Project
Transpogene
TRIPLES
VBRC
VIDA 2.0
VIPERdb
VirHostNet
Vir-Mir DB
VirOligo
VirusMINT
ViTA
POPULAR LINKS
Wikipedia
FORMER VERSIONS
First release: Ty3/Gypsy and Retroviridae
Classified elements
From The Gypsy Database
This is the complete list of currently classified elements in our database.
1
CFG1
HmGINO3
REM1
17.6
CfGIN1 mRNA
HMS-Beagle
Retrofit
1731
CfKRBA2
Hopscotch
Retrosat-2
2
CfSCAND3
HsCGIN1 mRNA
RetroSor1
297
Cft-1
HsGIN1 mRNA
REV
4
CgFOB1 partial mRNA
HsKRBA2
rGmr1
412
Cgret
HsSCAND3
RIRE2
A
ChKRBA2
HTLV-1
RnGIN1 mRNA
AcGIN1 genomic with introns
ChSCAND3
HTLV-2
Roo
AcGIN2 EST
CiCIN1
Humnum
RpGINGER2a
AcGINGER1-1 Repbaseaccession Ginger1-1 AC with 138ntTIRs
Cico1
Hydra1-1
RpGINGER2b
AgFOB1
CiGIN2 mRNA
Hydra1-2
RSV
Amn-ichi
Cigr-1
Hydra2-1
RTBV
Amn-ni
Cinful-1
Hydra3-1
RTVL-Ia
Amn-san
Circe
I
RTvr2
ApBIN1a
CLNV
Idefix
RuFDV
ApBIN1b
CmYLCV
Ifg7
S
ApBIN1c
CoDi2.4
ISAf
SA-OMVV
ApBIN1d
CoDi3.1
ISEc
Saci-6
ApBIN1e
CoDi4.1
ISLa
SbCMV
ApBIN1f
CoDi4.3
ISSc
ScBIMV
ApBIN1g
CoDi4.4
ISTv1
ScFOB1
ApBIN1h
CoDi4.5
ISTv2 mRNA
SERV
ApBIN1j
CoDi5.1
ISTv3 mRNA
SFV-1
ApBIN1k
CoDi5.2
J
Sinbad
ApBIN1l
CoDi5.3
JSRV
SIRE1-4
ApBIN1m
CoDi5.4
K
SIVAGM
ApBIN1n
CoDi5.5
K-HERV
SIVMAC
ApBIN1o
CoDi5.6
Kabuki
SIVMND
ApBIN1p
CoDi6.1
Koala
Skipper
ApCIN1a
CoDi6.2
Kobel
Skippy
ApCIN1b
CoDi6.3
Koco
SmCIN1 Repbaseaccession Polinton-1 SM with intron
ApCIN1c
CoDi6.4
KoRV
SMRV-H
ApCIN1d
CoDi6.5
KTSV
SnRV
ApCIN1e
CoDi6.6
L
SpCIN1
ApCIN1f
CoDi6.7
LaKRBA2
Spirobel
ApCIN1j
CoDi7.1
LaSCAND3
SPM
ApCIN1n
ComYMV
LaSCAND3-2
Springer
ApCIN1q
Copia
LaSCAND3-3
SRV-1
ApGIN3a
CRM
Legolas
SsGIN1 mRNA
ApGIN3b
CsGIN2 genomic with introns
LLDAV
SsSCAND3
ApGIN3c
CsRN1
LPDV
STcLV2PP1664
ApGIN4a
CSSV
LsGINGER2-1 Repbaseaccession Ginger2-1 LS
Sto-4
ApGIN4b
CSVMV
LtFOB1 mRNA
SURL
ApGIN4c
Cubel
M
Sushi-ichi
ApGIN4d
Cyclops-2
Mabel
Suzu
ApGIN4e
CYMV
Mag
SVBV
ApGIN4f
D
Maggy
T
ApGIN5a
Dane-1
marY1
TaBV
ApGIN5b
DBV
Max
Tamy
ApGIN5c
Del
MbCIN1
Tas
ApGIN5e
Diaspora
MdEV
Tat4-1
ApGIN5f
DnKRBA2
Mdg1
TcCIN1
ApGIN6a
DnSCAND3
Mdg3
TcGINGER2
ApGIN6b
DpCIN1
MdGIN1 mRNA
Tdh2
ApGIN6c
DrCIN1
MeGIN2 genomic with introns
Ted
ApGIN7a
DrFV-1
Melmoth
TF1
ApGIN7b
DrGIN2-1 mRNA
MeSCAND3
TF2
ApGIN7c
DrGIN2-2 EST
MfGIN1 mRNA
Tft2
ApGIN7d
DRM
MgGINGER2 ORF with no TIRs
TgGIN1 mRNA
ApGINGER1a
DrMV
MGLR3
TgGIN2 mRNA
ApGINGER1b
E
Micropia
Tkm1
ApGINGER1c
EcCGIN1 mRNA
MiMV
Tma
ApGINGER1d
EcGIN1 mRNA
MmCGIN1 mRNA
Tnt-1
ApGINGER1e
EcKRBA2
MmGIN1 mRNA
Tntom1
ApGINGER1f
EcSCAND3
MMTV
Tom
ApGINGER2a
EFV
Monkey
Tor1
ApGINGER2b
EIAV
Moose
Tor2
ApGINGER2f
Endovir1-1
MPMV
Tor4a
Araco
EVCV
Mtanga
Tork4
ASSBSV
F
MuERV-L
ToRTL1
Athila4-1
FcKRBA2
MuLV
Tribel
B
FcSCAND3
N
Tricopia
B1147A04.5
FeLV
Nabel
Tse1
BAEVM
FFV
Ninja
Tse3
Bagy-1
FIV
Nomad
TsGINGER2
Bagy-2
FMV
NvCIN1
TSI-9
Batata
Fourf
NveCIN1-1 Repbaseaccession Polinton-N1 NV
TtKRBA2
Beetle1
FrGIN2 genomic with introns
NveCIN1-2
Tto1
Bel
G
NvGINGER2-1 Repbaseaccession Ginger2-1 NV
TtSCAND3
BfGINGER1-1 with79ntTIRs
G-Rhodo
NvGINGER2-2 Repbaseaccession Ginger2-2 NV
Tv1
BfGINGER2-1 Repbaseaccession Ginger2-1 BF
Gabel
O
TVCV
BFV
GaGIN2 genomic with introns
OaGIN1 mRNA
Ty1B
BIV
Galadriel
OcKRBA2
Ty2
Blastopia
GalEa1
OcSCAND3
Ty3-1
BLV
GaLV
OgGIN1
Ty4
BmGINGER2a with 37nt TIRs
GfCIN1
Ogre
U
BmGINGER2b
GgGIN1 mRNA
Olco1
Ulysses
Boudicca
GgGIN2 mRNA
OnGIN2 EST
V
BRRV
GiCIN1
Opie-2
V12
BsCVBV
Gimli
Oryco1-1
Vitico1-1
BSGFV
Gloin
Oryco1-2
Vitico1-2
BSMyV
Gmr1
Osser
VMV
BSOLV
Grande1-4
Osvaldo
W
BSVAV
Grasshopper
P
WdSV
BtCGIN1 mRNA
Gulliver
PaGIN1 mRNA
Woot
BtGIN1 mRNA
Gypsy
Pao
X
BtKRBA2
Gypsyvir
pCal
Xanthias
BtSCAND3
H
pCretro3
XEN1
Burdock
HERV-E
pCretro6
XlGIN2 mRNA
C
HERV-K10
PCSV
XmCIN1
CAEV
HFV
Peabody
XtCIN1
Calypso
HIV-1
PERV-MSL
XtGIN2
CaMV
HIV-2
Poco
Y
CbCIN1
HmCIN1
Purbel
Yokozuna
CcCIN1
HmGINA1
PVCV
Yoyo
Cer1
HmGINA2
PvKRBA2
Z
Cer10-1
HmGINA3
PvSCAND3
Zam
Cer2
HmGINA4
PyERV
Zebel
Cer3
HmGINA5
Pyggy
Zeco1
Cer4
HmGINGER1 mRNA
PyRE1G1
Zeco2
Cer5
HmGINGER1-3 with136ntTIRs
Pyret
ZFERV
Cer6
HmGINGER2-1 Repbaseaccession Ginger2-1 HM
R
ZFERV-2
Cer7
HmGINNY1
RcGIN2 EST
ZrFOB1
Cereba
HmGINNY2
RCHO-K1
CERV
HmGINO1
Real
CfCGIN1 mRNA
HmGINO2 with 45ntTIRs
Reina
Jump to:
navigation
,
search