Main----SUPERFAMILIESRetroelementsSYSTEMSLTR retroelementsGIN/GINGER TRs and INTs FAMILIESTy3/GypsyRetroviridae Bel/Pao Caulimoviridae Ty1/Copia GINA GINGER1 GINGER2 GINNY GINO IS3/IS481-like TDD CIN-1 CLASSIFIED ELEMENTSElements----RELATED FAMILIESClan AAChromodomains CGIN1 FOB1 GIN-1 GIN-2 SCAN/KRAB ----DOMAINSLTRs and TIRsGag Protease Reverse Transcriptase Ribonuclease H Integrase Envelope Transposase SCAN KRAB hATd Retr. chromodomains dUTPase Accessory genes ATF MOV VAP TAV ----TREES AND NETWORKSPhylogenetic treesClan AA Ref. DB GyDB COLLECTIONREFSEQ DATABASESTOOLS----LINKS OF INTEREST
POPULAR LINKSFORMER VERSIONS |
KRABFrom The Gypsy DatabaseKRAB (Krüppel-associated box) domain is a transcription repression module found in a subfamily of C2H2 zinc finger proteins (Bellefroid et al. 1999) and generally encoded by two exons, KRAB-A involved in repression and KRAB-B thought to act as enhancer for the A box repression. Whether or not the domain contains the A box, the B box, or both, it is always known as the KRAB domain (Urrutia 2006). KRAB-A domain is present at N-terminus in KRBA2 variants of SCAN/KRAB cellular integrases. The presence of KRAB-A box in KRBA2 proteins with no additional zinc finger domain more than that of Integrase is strikingly particular and up to our knowledge no details on potential function has been reported. |
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