Phylogeny:AP CAARD (clan AA Reference DB)

From The Gypsy Database

Method of phylogenenetic reconstruction

Phylogenetic reconstruction inferred based on the integrases and transposases included in the GIN/GINGER category. Phylogenetic analysis performed with the PHYLIP 3.6 package, 100 bootstrap replicates and JTT substitution model for aminoacid replacement. Here is shown the consensus tree obtained from MRC method.

Citation

Llorens,C. Futami,R., Renaud,G and A. Moya (2009). Bioinformatic Flowchart and Database to Investigate the Origins and Diversity of Clan AA Peptidases. Biology Direct, 4:3.

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