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CAARD:Athila - Revision history
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2009-05-08T10:05:47Z
<p></p>
<p><b>New page</b></p><div>{{CAARD<br />
|pin_output=<br />
(Athila-4:0.340501,(BAB61168.1:0.075102,Rigy-2:0.141744)N2:0.272239,((VfCiclops2:0.320751,(Calypso2-1:0.331080,Ciclops1:0.367491) N5:0.092515)N4:0.081529,(Diaspora:0.377623,Bagy-2:0.660810)N6:0.060058)N3:0.055184); <br />
<br />
|fin_output=<br />
<table class="tabdata"><br />
<tr class="grey"><br />
<td>Name</td><br />
<td>Father</td><br />
<td>Distance to father</td><br />
<td>Sons</td><br />
<tr> <br />
<tr><td>Athila-4</td><td>N1</td><td>0.340501</td><td>-</td></tr><tr><td>BAB61168.1</td><td>N2</td><td>0.0751018</td><td>-</td></tr><tr><td>Rigy-2</td><td>N2</td><td>0.141744</td><td>-</td></tr><tr><td>VfCiclops2</td><td>N4</td><td>0.320751</td><td>-</td></tr><tr><td>Calypso2-1</td><td>N5</td><td>0.33108</td><td>-</td></tr><tr><td>Ciclops1</td><td>N5</td><td>0.367491</td><td>-</td></tr><tr><td>Diaspora</td><td>N6</td><td>0.377623</td><td>-</td></tr><tr><td>Bagy-2</td><td>N6</td><td>0.66081</td><td>-</td></tr><tr><td>N1</td><td>root!</td><td>-</td><td>Athila-4 N2 N3</td></tr><tr><td>N2</td><td>N1</td><td>0.272239</td><td>BAB61168.1 Rigy-2</td></tr><tr><td>N3</td><td>N1</td><td>0.0551835</td><td>N4 N6</td></tr><tr><td>N4</td><td>N3</td><td>0.081529</td><td>VfCiclops2 N5</td></tr><tr><td>N5</td><td>N4</td><td>0.0925146</td><td>Calypso2-1 Ciclops1</td></tr><tr><td>N6</td><td>N3</td><td>0.0600579</td><td>Diaspora Bagy-2</td></tr><br />
</table> <br />
<br />
|jpf_output=<br />
<table class="tabdata"><br />
<tr class="grey"><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<tr><br />
<tr class="text"><td>0</td><td>1.41103e-008</td><td>28</td><td>2.46677e-008</td><td>56</td><td>2.96975e-006</td><td>84</td><td>0.0008017</td></tr><tr class="text"><td>1</td><td>0.000153471</td><td>29</td><td>2.70871e-008</td><td>57</td><td>3.66155e-005</td><td>85</td><td>0.00969646</td></tr><tr class="text"><td>2</td><td>0.000660474</td><td>30</td><td>4.51993e-010</td><td>58</td><td>2.58898e-013</td><td>86</td><td>0.00221299</td></tr><tr class="text"><td>3</td><td>0.00969646</td><td>31</td><td>1.05028e-006</td><td>59</td><td>5.98165e-010</td><td>87</td><td>4.95743e-005</td></tr><tr class="text"><td>4</td><td>0.000174454</td><td>32</td><td>6.23812e-008</td><td>60</td><td>6.85636e-008</td><td>88</td><td>0.0055099</td></tr><tr class="text"><td>5</td><td>0.000845527</td><td>33</td><td>5.05453e-005</td><td>61</td><td>1.06454e-009</td><td>89</td><td>2.28789e-006</td></tr><tr class="text"><td>6</td><td>7.61164e-005</td><td>34</td><td>1.01623e-008</td><td>62</td><td>1.34963e-005</td><td>90</td><td>5.3973e-011</td></tr><tr class="text"><td>7</td><td>1.87858e-005</td><td>35</td><td>0.000381859</td><td>63</td><td>2.25911e-006</td><td>91</td><td>0.000127219</td></tr><tr class="text"><td>8</td><td>3.44164e-008</td><td>36</td><td>0.000116999</td><td>64</td><td>3.85403e-006</td><td>92</td><td>5.82306e-007</td></tr><tr class="text"><td>9</td><td>1.28012e-005</td><td>37</td><td>2.5479e-005</td><td>65</td><td>0.00217532</td><td>93</td><td>5.63143e-009</td></tr><tr class="text"><td>10</td><td>7.09691e-005</td><td>38</td><td>4.58245e-009</td><td>66</td><td>0.0055099</td><td>94</td><td>2.82072e-010</td></tr><tr class="text"><td>11</td><td>5.55139e-007</td><td>39</td><td>0.000379158</td><td>67</td><td>1.75343e-007</td><td>95</td><td>5.90529e-012</td></tr><tr class="text"><td>12</td><td>2.11433e-006</td><td>40</td><td>8.93302e-008</td><td>68</td><td>0.000316625</td><td>96</td><td>1.44325e-006</td></tr><tr class="text"><td>13</td><td>3.83534e-007</td><td>41</td><td>7.12186e-006</td><td>69</td><td>1.58809e-005</td><td>97</td><td>0.00217532</td></tr><tr class="text"><td>14</td><td>1.80537e-009</td><td>42</td><td>1.15613e-010</td><td>70</td><td>2.6882e-007</td><td>98</td><td>5.63261e-007</td></tr><tr class="text"><td>15</td><td>3.01972e-009</td><td>43</td><td>8.16557e-011</td><td>71</td><td>5.74721e-006</td><td>99</td><td>1.65073e-013</td></tr><tr class="text"><td>16</td><td>0.000278798</td><td>44</td><td>1.58488e-006</td><td>72</td><td>0.0262061</td><td>100</td><td>3.56282e-010</td></tr><tr class="text"><td>17</td><td>0.00276511</td><td>45</td><td>2.44936e-013</td><td>73</td><td>0.019936</td><td>101</td><td>6.8098e-007</td></tr><tr class="text"><td>18</td><td>2.35899e-007</td><td>46</td><td>2.65118e-007</td><td>74</td><td>0.000225562</td><td>102</td><td>1.07735e-010</td></tr><tr class="text"><td>19</td><td>0.0154243</td><td>47</td><td>4.32562e-009</td><td>75</td><td>8.16879e-009</td><td>103</td><td>6.6331e-008</td></tr><tr class="text"><td>20</td><td>0.020775</td><td>48</td><td>0.0155082</td><td>76</td><td>1.01208e-010</td><td>104</td><td>5.04012e-012</td></tr><tr class="text"><td>21</td><td>0.000991446</td><td>49</td><td>0.0154243</td><td>77</td><td>4.28167e-008</td><td>105</td><td>4.10705e-005</td></tr><tr class="text"><td>22</td><td>7.99039e-006</td><td>50</td><td>8.0316e-011</td><td>78</td><td>1.85779e-010</td><td>106</td><td>9.51988e-008</td></tr><tr class="text"><td>23</td><td>6.3989e-013</td><td>51</td><td>2.02958e-005</td><td>79</td><td>1.01433e-011</td><td>107</td><td>2.12039e-011</td></tr><tr class="text"><td>24</td><td>8.90299e-008</td><td>52</td><td>3.11841e-008</td><td>80</td><td>7.55338e-012</td><td>108</td><td>1.48121e-008</td></tr><tr class="text"><td>25</td><td>2.59012e-008</td><td>53</td><td>4.06293e-011</td><td>81</td><td>0.000131361</td><td>109</td><td>1.09217e-005</td></tr><tr class="text"><td>26</td><td>5.25571e-008</td><td>54</td><td>2.41888e-011</td><td>82</td><td>2.09607e-006</td><td>&nbsp;</td><td>&nbsp;</td></tr><tr class="text"><td>27</td><td>6.50451e-011</td><td>55</td><td>1.90212e-006</td><td>83</td><td>0.00119786</td><td>&nbsp;</td><td>&nbsp;</td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-1596.59</td></tr><br />
</table> <br />
<br />
|jrof_output=<br />
<align id="mag" folder="jrof"></align><br />
<br />
|mpf_output= <br />
<table class="tabdata"><br />
<tr class="grey"><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<tr><br />
<tr class="text"><td>0</td><td>1.57661e-008</td><td>28</td><td>3.58714e-008</td><td>56</td><td>5.11101e-006</td><td>84</td><td>0.000809144</td></tr><tr class="text"><td>1</td><td>0.000155314</td><td>29</td><td>2.80941e-008</td><td>57</td><td>0.000115077</td><td>85</td><td>0.00969912</td></tr><tr class="text"><td>2</td><td>0.000667868</td><td>30</td><td>2.01694e-009</td><td>58</td><td>8.10242e-013</td><td>86</td><td>0.00221753</td></tr><tr class="text"><td>3</td><td>0.00969912</td><td>31</td><td>2.06014e-006</td><td>59</td><td>1.85868e-009</td><td>87</td><td>4.97412e-005</td></tr><tr class="text"><td>4</td><td>0.000180199</td><td>32</td><td>8.68025e-008</td><td>60</td><td>7.18354e-008</td><td>88</td><td>0.00551211</td></tr><tr class="text"><td>5</td><td>0.000849147</td><td>33</td><td>0.000103165</td><td>61</td><td>1.83493e-009</td><td>89</td><td>4.09398e-006</td></tr><tr class="text"><td>6</td><td>0.000145701</td><td>34</td><td>1.22417e-008</td><td>62</td><td>1.6215e-005</td><td>90</td><td>2.18778e-010</td></tr><tr class="text"><td>7</td><td>2.64505e-005</td><td>35</td><td>0.000385048</td><td>63</td><td>2.28222e-006</td><td>91</td><td>0.000132107</td></tr><tr class="text"><td>8</td><td>1.43806e-007</td><td>36</td><td>0.000120672</td><td>64</td><td>4.03156e-006</td><td>92</td><td>6.25873e-007</td></tr><tr class="text"><td>9</td><td>1.30195e-005</td><td>37</td><td>4.88928e-005</td><td>65</td><td>0.00218325</td><td>93</td><td>7.39581e-009</td></tr><tr class="text"><td>10</td><td>7.15841e-005</td><td>38</td><td>9.61962e-009</td><td>66</td><td>0.00551211</td><td>94</td><td>1.02857e-009</td></tr><tr class="text"><td>11</td><td>5.63979e-007</td><td>39</td><td>0.00232884</td><td>67</td><td>2.49697e-007</td><td>95</td><td>1.09684e-011</td></tr><tr class="text"><td>12</td><td>2.46581e-006</td><td>40</td><td>9.80526e-008</td><td>68</td><td>0.000341949</td><td>96</td><td>1.56714e-006</td></tr><tr class="text"><td>13</td><td>1.00673e-006</td><td>41</td><td>1.13577e-005</td><td>69</td><td>2.84738e-005</td><td>97</td><td>0.00218325</td></tr><tr class="text"><td>14</td><td>6.55359e-009</td><td>42</td><td>4.33337e-010</td><td>70</td><td>3.62316e-007</td><td>98</td><td>8.53786e-007</td></tr><tr class="text"><td>15</td><td>8.89954e-009</td><td>43</td><td>9.86113e-011</td><td>71</td><td>5.8495e-006</td><td>99</td><td>4.57982e-013</td></tr><tr class="text"><td>16</td><td>0.00166947</td><td>44</td><td>1.61748e-006</td><td>72</td><td>0.06183</td><td>100</td><td>4.64375e-010</td></tr><tr class="text"><td>17</td><td>0.00656887</td><td>45</td><td>1.30593e-012</td><td>73</td><td>0.051544</td><td>101</td><td>7.18962e-007</td></tr><tr class="text"><td>18</td><td>6.15311e-007</td><td>46</td><td>2.67716e-007</td><td>74</td><td>0.0010497</td><td>102</td><td>1.84261e-010</td></tr><tr class="text"><td>19</td><td>0.051544</td><td>47</td><td>1.53891e-008</td><td>75</td><td>2.8875e-008</td><td>103</td><td>1.69063e-007</td></tr><tr class="text"><td>20</td><td>0.06183</td><td>48</td><td>0.051691</td><td>76</td><td>2.21892e-010</td><td>104</td><td>1.8105e-011</td></tr><tr class="text"><td>21</td><td>0.00100016</td><td>49</td><td>0.051544</td><td>77</td><td>1.06715e-007</td><td>105</td><td>0.000207565</td></tr><tr class="text"><td>22</td><td>8.11939e-006</td><td>50</td><td>3.29317e-010</td><td>78</td><td>4.62272e-010</td><td>106</td><td>3.15735e-007</td></tr><tr class="text"><td>23</td><td>9.96076e-012</td><td>51</td><td>2.06326e-005</td><td>79</td><td>7.87047e-011</td><td>107</td><td>6.04734e-011</td></tr><tr class="text"><td>24</td><td>1.80339e-007</td><td>52</td><td>3.29089e-008</td><td>80</td><td>4.46564e-011</td><td>108</td><td>7.64425e-008</td></tr><tr class="text"><td>25</td><td>3.18153e-008</td><td>53</td><td>1.45662e-010</td><td>81</td><td>0.000131713</td><td>109</td><td>1.10654e-005</td></tr><tr class="text"><td>26</td><td>1.0047e-007</td><td>54</td><td>2.86689e-011</td><td>82</td><td>4.64204e-006</td><td>&nbsp;</td><td>&nbsp;</td></tr><tr class="text"><td>27</td><td>1.57683e-010</td><td>55</td><td>2.19862e-006</td><td>83</td><td>0.00120696</td><td>&nbsp;</td><td>&nbsp;</td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-1529.38</td></tr><br />
</table> <br />
<br />
|mrof_output=<br />
<align id="mag" folder="mrof"></align><br />
<br />
|sequence_logo=<br />
[[Image:Logo_athila.png|500px|center]]<br />
<br />
|hmms=<br />
<pre><br />
>AP_athila profile HMM generated consensus sequence<br />
iDLGAsvsvmPlsiykrLgstelqstrmtlqLADrsvryPyGiiEDmLvKidkFvfPvD<br />
FvvLDmdeekeiPLiLGRPFlstAgAniDvEkGsi<br />
</pre><br />
<br />
|pairwise_alignment=<br />
<pre><br />
Domain 1 of 1, from 1 to 89: score 54.2, E = 4.8e-17<br />
<br />
DTG_ILG template*->vDTGAsvlsviskecklaqklgltrkkafdpSSYvCivtllsysqPs<br />
+D GAsv sv++ + + ++lg ++ <br />
AP_athila 1 IDLGASV-SVMPLS--IYKRLGS--------------------TEL- 23 <br />
<br />
sktsttaqdtirgagGqskiyvSklktsgqirknllslvtikitkGnvTe<br />
+ t +t ++ a+ + ++ ++g i++ + +ki+k <br />
AP_athila 24 QSTRMT----LQLADRSVRY------PYGIIED-----MLVKIDKF---- 54 <br />
<br />
venrslpsdgvflvvtdpedqksrydvILGrldfLrqlnsvhidl<-*<br />
++ d f+v+ d++ +k+ +++ILGr +fL+ ++++ id+ <br />
AP_athila 55 ---VFPV-D--FVVL-DMDEEKE-IPLILGR-PFLSTAGAN-IDV 89 <br />
</pre><br />
}}</div>
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