imported>Gydbwiki: New page: {{CAARD |pin_output= (4481821:0.605843,(Bel:0.982082,(31230427:0.900315,Pao:0.876113)N3:0.154047)N2:0.104897,((31232862:0.679930,(Tas:0.849323, (cer7:1.043763,(cer10-1:0.898940,((cer8:0.66...

2009-05-08T10:20:02Z

New page: {{CAARD |pin_output= (4481821:0.605843,(Bel:0.982082,(31230427:0.900315,Pao:0.876113)N3:0.154047)N2:0.104897,((31232862:0.679930,(Tas:0.849323, (cer7:1.043763,(cer10-1:0.898940,((cer8:0.66...

New page

{{CAARD
|pin_output=
(4481821:0.605843,(Bel:0.982082,(31230427:0.900315,Pao:0.876113)N3:0.154047)N2:0.104897,((31232862:0.679930,(Tas:0.849323, (cer7:1.043763,(cer10-1:0.898940,((cer8:0.668781,Cer9:0.510442)N10:0.272264,(cer12:0.195909,cer11:0.408461)N11:0.182070) N9:0.014741)N8:0.602639)N7:0.152459)N6:0.105867)N5:0.090728,((31196163:0.340113,31232486:0.504037)N13:0.083320, (31229813:0.839113,Tram:0.562567)N14:0.055101)N12:0.056849)N4:0.021543);

|fin_output=
<table class="tabdata">
<tr class="grey">
<td>Name</td>
<td>Father</td>
<td>Distance to father</td>
<td>Sons</td>
<tr>
<tr><td>4481821</td><td>N1</td><td>0.605843</td><td>-</td></tr><tr><td>Bel</td><td>N2</td><td>0.982082</td><td>-</td></tr><tr><td>31230427</td><td>N3</td><td>0.900315</td><td>-</td></tr><tr><td>Pao</td><td>N3</td><td>0.876113</td><td>-</td></tr><tr><td>31232862</td><td>N5</td><td>0.67993</td><td>-</td></tr><tr><td>Tas</td><td>N6</td><td>0.849323</td><td>-</td></tr><tr><td>cer7</td><td>N7</td><td>1.04376</td><td>-</td></tr><tr><td>cer10-1</td><td>N8</td><td>0.89894</td><td>-</td></tr><tr><td>cer8</td><td>N10</td><td>0.668781</td><td>-</td></tr><tr><td>Cer9</td><td>N10</td><td>0.510442</td><td>-</td></tr><tr><td>cer12</td><td>N11</td><td>0.195909</td><td>-</td></tr><tr><td>cer11</td><td>N11</td><td>0.408461</td><td>-</td></tr><tr><td>31196163</td><td>N13</td><td>0.340113</td><td>-</td></tr><tr><td>31232486</td><td>N13</td><td>0.504037</td><td>-</td></tr><tr><td>31229813</td><td>N14</td><td>0.839113</td><td>-</td></tr><tr><td>Tram</td><td>N14</td><td>0.562567</td><td>-</td></tr><tr><td>N1</td><td>root!</td><td>-</td><td>4481821 N2 N4</td></tr><tr><td>N2</td><td>N1</td><td>0.104897</td><td>Bel N3</td></tr><tr><td>N3</td><td>N2</td><td>0.154047</td><td>31230427 Pao</td></tr><tr><td>N4</td><td>N1</td><td>0.0215427</td><td>N5 N12</td></tr><tr><td>N5</td><td>N4</td><td>0.0907278</td><td>31232862 N6</td></tr><tr><td>N6</td><td>N5</td><td>0.105867</td><td>Tas N7</td></tr><tr><td>N7</td><td>N6</td><td>0.152459</td><td>cer7 N8</td></tr><tr><td>N8</td><td>N7</td><td>0.602639</td><td>cer10-1 N9</td></tr><tr><td>N9</td><td>N8</td><td>0.0147414</td><td>N10 N11</td></tr><tr><td>N10</td><td>N9</td><td>0.272264</td><td>cer8 Cer9</td></tr><tr><td>N11</td><td>N9</td><td>0.18207</td><td>cer12 cer11</td></tr><tr><td>N12</td><td>N4</td><td>0.0568487</td><td>N13 N14</td></tr><tr><td>N13</td><td>N12</td><td>0.08332</td><td>31196163 31232486</td></tr><tr><td>N14</td><td>N12</td><td>0.0551009</td><td>31229813 Tram</td></tr>
</table>

|jpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<tr>
<tr class="text"><td>0</td><td>7.24079e-013</td><td>34</td><td>6.67524e-018</td><td>68</td><td>9.25531e-015</td><td>102</td><td>1.05897e-014</td></tr><tr class="text"><td>1</td><td>2.68349e-009</td><td>35</td><td>2.56648e-011</td><td>69</td><td>2.12864e-012</td><td>103</td><td>1.31101e-015</td></tr><tr class="text"><td>2</td><td>6.78629e-018</td><td>36</td><td>3.65488e-019</td><td>70</td><td>5.26992e-013</td><td>104</td><td>1.69236e-018</td></tr><tr class="text"><td>3</td><td>3.30919e-011</td><td>37</td><td>1.48548e-020</td><td>71</td><td>6.56193e-012</td><td>105</td><td>5.43323e-019</td></tr><tr class="text"><td>4</td><td>6.80775e-013</td><td>38</td><td>4.53303e-020</td><td>72</td><td>8.6209e-010</td><td>106</td><td>1.98766e-016</td></tr><tr class="text"><td>5</td><td>1.63939e-016</td><td>39</td><td>1.62955e-021</td><td>73</td><td>2.65219e-014</td><td>107</td><td>1.00497e-012</td></tr><tr class="text"><td>6</td><td>3.25136e-021</td><td>40</td><td>5.89124e-016</td><td>74</td><td>2.15941e-013</td><td>108</td><td>5.54936e-017</td></tr><tr class="text"><td>7</td><td>1.03434e-015</td><td>41</td><td>9.21974e-015</td><td>75</td><td>6.10169e-018</td><td>109</td><td>3.45377e-012</td></tr><tr class="text"><td>8</td><td>2.35811e-019</td><td>42</td><td>7.73198e-018</td><td>76</td><td>3.87134e-017</td><td>110</td><td>1.63476e-016</td></tr><tr class="text"><td>9</td><td>6.7879e-014</td><td>43</td><td>5.66024e-018</td><td>77</td><td>3.29093e-021</td><td>111</td><td>1.75242e-017</td></tr><tr class="text"><td>10</td><td>2.09593e-010</td><td>44</td><td>4.84406e-018</td><td>78</td><td>9.93102e-015</td><td>112</td><td>7.81765e-015</td></tr><tr class="text"><td>11</td><td>6.17411e-018</td><td>45</td><td>3.7131e-022</td><td>79</td><td>4.81645e-019</td><td>113</td><td>1.61508e-010</td></tr><tr class="text"><td>12</td><td>1.94397e-019</td><td>46</td><td>2.58893e-022</td><td>80</td><td>6.89121e-021</td><td>114</td><td>6.30582e-015</td></tr><tr class="text"><td>13</td><td>1.04408e-016</td><td>47</td><td>2.012e-017</td><td>81</td><td>2.28779e-005</td><td>115</td><td>8.4195e-014</td></tr><tr class="text"><td>14</td><td>5.09335e-008</td><td>48</td><td>2.55826e-020</td><td>82</td><td>9.94124e-014</td><td>116</td><td>3.47742e-010</td></tr><tr class="text"><td>15</td><td>3.44399e-013</td><td>49</td><td>1.47673e-014</td><td>83</td><td>3.60274e-017</td><td>117</td><td>2.50277e-0005</td></tr><tr class="text"><td>16</td><td>3.13734e-019</td><td>50</td><td>2.46949e-020</td><td>84</td><td>3.54396e-022</td><td>118</td><td>1.91487e-018</td></tr><tr class="text"><td>17</td><td>1.51407e-018</td><td>51</td><td>3.68886e-018</td><td>85</td><td>7.47677e-025</td><td>119</td><td>1.26854e-012</td></tr><tr class="text"><td>18</td><td>1.31551e-013</td><td>52</td><td>2.05795e-018</td><td>86</td><td>1.28656e-014</td><td>120</td><td>1.866e-020</td></tr><tr class="text"><td>19</td><td>0.00638481</td><td>53</td><td>5.67067e-008</td><td>87</td><td>7.43157e-017</td><td>121</td><td>3.71025e-014</td></tr><tr class="text"><td>20</td><td>3.59042e-017</td><td>54</td><td>4.28831e-021</td><td>88</td><td>1.76192e-023</td><td>122</td><td>1.34089e-020</td></tr><tr class="text"><td>21</td><td>0.01754</td><td>55</td><td>1.60203e-021</td><td>89</td><td>5.23e-025</td><td>123</td><td>1.83162e-021</td></tr><tr class="text"><td>22</td><td>1.35151e-012</td><td>56</td><td>1.47567e-017</td><td>90</td><td>3.27538e-021</td><td>124</td><td>2.33163e-015</td></tr><tr class="text"><td>23</td><td>1.11149e-023</td><td>57</td><td>3.34195e-021</td><td>91</td><td>9.18958e-023</td><td>125</td><td>1.06646e-020</td></tr><tr class="text"><td>24</td><td>2.17225e-019</td><td>58</td><td>1.78885e-023</td><td>92</td><td>7.09424e-026</td><td>126</td><td>2.35218e-020</td></tr><tr class="text"><td>25</td><td>3.0828e-022</td><td>59</td><td>1.20206e-024</td><td>93</td><td>3.44895e-023</td><td>127</td><td>2.56223e-020</td></tr><tr class="text"><td>26</td><td>2.17729e-022</td><td>60</td><td>1.45963e-022</td><td>94</td><td>2.41005e-022</td><td>128</td><td>6.72408e-020</td></tr><tr class="text"><td>27</td><td>6.85255e-024</td><td>61</td><td>5.68431e-024</td><td>95</td><td>1.36756e-021</td><td>129</td><td>3.35338e-019</td></tr><tr class="text"><td>28</td><td>2.60033e-019</td><td>62</td><td>1.8189e-024</td><td>96</td><td>2.62404e-019</td><td>130</td><td>2.15279e-013</td></tr><tr class="text"><td>29</td><td>5.44278e-023</td><td>63</td><td>2.48176e-015</td><td>97</td><td>4.67537e-020</td><td>131</td><td>1.95258e-015</td></tr><tr class="text"><td>30</td><td>1.49934e-024</td><td>64</td><td>2.04719e-021</td><td>98</td><td>8.85395e-025</td><td>132</td><td>4.16501e-020</td></tr><tr class="text"><td>31</td><td>1.22314e-016</td><td>65</td><td>7.22613e-019</td><td>99</td><td>4.18348e-022</td><td> </td><td> </td></tr><tr class="text"><td>32</td><td>4.58009e-014</td><td>66</td><td>7.09438e-015</td><td>100</td><td>5.28986e-021</td><td> </td><td> </td></tr><tr class="text"><td>33</td><td>5.90595e-015</td><td>67</td><td>2.31307e-018</td><td>101</td><td>1.4181e-016</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-5119.68</td></tr>
</table>

|jrof_output=
<align id="bel" folder="jrof"></align>

|mpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<tr>
<tr class="text"><td>0</td><td>1.20933e-012</td><td>34</td><td>1.49619e-016</td><td>68</td><td>3.67905e-013</td><td>102</td><td>3.48661e-014</td></tr><tr class="text"><td>1</td><td>3.18353e-009</td><td>35</td><td>2.80475e-011</td><td>69</td><td>6.89171e-011</td><td>103</td><td>5.10143e-015</td></tr><tr class="text"><td>2</td><td>4.68936e-017</td><td>36</td><td>3.3949e-018</td><td>70</td><td>5.73377e-012</td><td>104</td><td>4.47252e-017</td></tr><tr class="text"><td>3</td><td>4.91468e-011</td><td>37</td><td>2.49775e-019</td><td>71</td><td>2.5537e-010</td><td>105</td><td>2.57809e-018</td></tr><tr class="text"><td>4</td><td>2.28352e-012</td><td>38</td><td>2.36324e-018</td><td>72</td><td>7.70509e-009</td><td>106</td><td>3.37011e-016</td></tr><tr class="text"><td>5</td><td>1.29576e-015</td><td>39</td><td>5.86935e-020</td><td>73</td><td>1.51407e-013</td><td>107</td><td>2.2831e-011</td></tr><tr class="text"><td>6</td><td>3.49334e-020</td><td>40</td><td>3.2562e-015</td><td>74</td><td>1.00456e-012</td><td>108</td><td>9.87034e-017</td></tr><tr class="text"><td>7</td><td>1.05727e-014</td><td>41</td><td>9.95213e-014</td><td>75</td><td>1.45354e-016</td><td>109</td><td>7.66121e-012</td></tr><tr class="text"><td>8</td><td>1.03308e-018</td><td>42</td><td>1.03583e-016</td><td>76</td><td>3.27055e-016</td><td>110</td><td>8.41827e-016</td></tr><tr class="text"><td>9</td><td>3.05514e-013</td><td>43</td><td>1.72577e-016</td><td>77</td><td>1.14996e-019</td><td>111</td><td>6.68686e-017</td></tr><tr class="text"><td>10</td><td>5.10297e-009</td><td>44</td><td>7.03409e-018</td><td>78</td><td>5.60563e-014</td><td>112</td><td>1.63216e-014</td></tr><tr class="text"><td>11</td><td>6.69407e-017</td><td>45</td><td>3.99522e-021</td><td>79</td><td>8.54649e-018</td><td>113</td><td>2.53941e-010</td></tr><tr class="text"><td>12</td><td>4.17905e-019</td><td>46</td><td>2.92391e-021</td><td>80</td><td>9.49646e-020</td><td>114</td><td>1.20777e-014</td></tr><tr class="text"><td>13</td><td>7.02481e-016</td><td>47</td><td>9.25281e-017</td><td>81</td><td>0.000366755</td><td>115</td><td>8.89004e-013</td></tr><tr class="text"><td>14</td><td>1.19722e-006</td><td>48</td><td>1.92281e-019</td><td>82</td><td>4.32825e-013</td><td>116</td><td>4.63823e-010</td></tr><tr class="text"><td>15</td><td>7.34026e-013</td><td>49</td><td>3.25962e-014</td><td>83</td><td>1.17017e-016</td><td>117</td><td>2.51097e-005</td></tr><tr class="text"><td>16</td><td>9.58329e-018</td><td>50</td><td>2.91814e-019</td><td>84</td><td>8.63672e-021</td><td>118</td><td>1.3137e-017</td></tr><tr class="text"><td>17</td><td>8.93173e-018</td><td>51</td><td>1.70463e-017</td><td>85</td><td>4.14766e-023</td><td>119</td><td>1.82813e-012</td></tr><tr class="text"><td>18</td><td>8.22776e-013</td><td>52</td><td>4.84789e-017</td><td>86</td><td>2.18976e-013</td><td>120</td><td>4.02189e-019</td></tr><tr class="text"><td>19</td><td>0.058676</td><td>53</td><td>1.6389e-006</td><td>87</td><td>2.7775e-015</td><td>121</td><td>1.15408e-013</td></tr><tr class="text"><td>20</td><td>7.93522e-017</td><td>54</td><td>7.27982e-019</td><td>88</td><td>2.46608e-021</td><td>122</td><td>5.08949e-020</td></tr><tr class="text"><td>21</td><td>0.091904</td><td>55</td><td>2.80801e-020</td><td>89</td><td>1.35577e-023</td><td>123</td><td>3.62168e-020</td></tr><tr class="text"><td>22</td><td>4.21524e-012</td><td>56</td><td>5.87536e-017</td><td>90</td><td>4.32135e-020</td><td>124</td><td>3.67156e-015</td></tr><tr class="text"><td>23</td><td>1.18037e-022</td><td>57</td><td>1.0556e-020</td><td>91</td><td>4.22484e-022</td><td>125</td><td>4.67236e-020</td></tr><tr class="text"><td>24</td><td>1.42526e-017</td><td>58</td><td>3.97277e-022</td><td>92</td><td>8.67628e-025</td><td>126</td><td>1.68928e-019</td></tr><tr class="text"><td>25</td><td>3.6845e-021</td><td>59</td><td>2.37544e-023</td><td>93</td><td>6.64886e-022</td><td>127</td><td>2.04828e-019</td></tr><tr class="text"><td>26</td><td>8.47903e-021</td><td>60</td><td>2.67693e-021</td><td>94</td><td>3.25259e-021</td><td>128</td><td>8.28625e-019</td></tr><tr class="text"><td>27</td><td>1.99243e-022</td><td>61</td><td>2.01123e-022</td><td>95</td><td>3.19519e-021</td><td>129</td><td>5.79831e-018</td></tr><tr class="text"><td>28</td><td>2.40691e-018</td><td>62</td><td>2.84222e-022</td><td>96</td><td>2.78944e-018</td><td>130</td><td>8.53888e-013</td></tr><tr class="text"><td>29</td><td>1.16817e-021</td><td>63</td><td>2.88751e-015</td><td>97</td><td>2.65096e-019</td><td>131</td><td>9.78542e-015</td></tr><tr class="text"><td>30</td><td>8.05691e-024</td><td>64</td><td>1.32177e-020</td><td>98</td><td>4.9208e-023</td><td>132</td><td>5.50002e-019</td></tr><tr class="text"><td>31</td><td>8.95322e-016</td><td>65</td><td>7.81395e-018</td><td>99</td><td>1.39842e-020</td><td> </td><td> </td></tr><tr class="text"><td>32</td><td>8.27644e-014</td><td>66</td><td>2.31555e-013</td><td>100</td><td>5.14462e-020</td><td> </td><td> </td></tr><tr class="text"><td>33</td><td>1.15308e-014</td><td>67</td><td>9.51129e-018</td><td>101</td><td>6.84153e-016</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-4832.94</td></tr>
</table>

|mrof_output=
<align id="bel" folder="mrof"></align>

|sequence_logo=
[[Image:Logo_bel.png|500px|center]]

|hmms=
<pre>
>AP_Bel profile HMM generated consensus sequence
DsGSqvslIterlAqqLgLkrtraslhIsgiGgnkattsksrivklsirsrnSliagle
slvltqvtaplpsnqdltdvdnwkiphneiladptfnkpgrIDiiiGnDvladllaasr
</pre>

|pairwise_alignment=
<pre>
Domain 1 of 1, from 1 to 119: score 62.6, E = 1.4e-19

DTG_ILG template *->vDTGAsvlsviskecklaqklgltrkkafdpSSYvCivtllsysqPs
D+G++v s+i+++ laq+lgl+r +++s
AP_Bel 1 -DSGSQV-SLITER--LAQQLGLKR------------------TRAS 25

sktsttaqdtirgagGqskiyvSklktsgqirknllslvtikitkGnv..
+ i g+gG++++ +Sk++++ +++ +s+ +++ G ++
AP_Bel 26 LH--------ISGIGGNKAT-TSKSRIVKLSI---RSRNSLIA--GLEsl 61

...............Tevenrslpsdgvflvvtdpedqks.rydvILGrl
++ + + +++++ T+v+n+++p+++ + ++ dp ++k++r+d+I+G+
AP_Bel 62 vltqvtaplpsnqdlTDVDNWKIPHNE-I-LA-DPTFNKPgRIDIIIGN- 107

dfLrqlnsvhidl<-*
d+L +l + ++
AP_Bel 108 DVLADLLAA-SRI 119
</pre>
}}

CAARD:Bel - Revision history

imported>Gydbwiki: New page: {{CAARD |pin_output= (4481821:0.605843,(Bel:0.982082,(31230427:0.900315,Pao:0.876113)N3:0.154047)N2:0.104897,((31232862:0.679930,(Tas:0.849323, (cer7:1.043763,(cer10-1:0.898940,((cer8:0.66...