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CAARD:COG3577 - Revision history
2026-06-09T14:57:10Z
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imported>Gydbwiki: New page: {{CAARD |pin_output= (Cc1307:0.377680,((Rc1339:0.011470,Rp867:0.022462)N3:0.419820,(Mmc12119:0.415269,rsph03003184:0.527451)N4:0.097539)N2:0.047189, (Atu1893:0.359069,((BR0864:0.251268,Mlr...
2009-05-08T11:44:58Z
<p>New page: {{CAARD |pin_output= (Cc1307:0.377680,((Rc1339:0.011470,Rp867:0.022462)N3:0.419820,(Mmc12119:0.415269,rsph03003184:0.527451)N4:0.097539)N2:0.047189, (Atu1893:0.359069,((BR0864:0.251268,Mlr...</p>
<p><b>New page</b></p><div>{{CAARD<br />
|pin_output=<br />
(Cc1307:0.377680,((Rc1339:0.011470,Rp867:0.022462)N3:0.419820,(Mmc12119:0.415269,rsph03003184:0.527451)N4:0.097539)N2:0.047189, (Atu1893:0.359069,((BR0864:0.251268,Mlr0565:0.350268)N7:0.092589,(((Atu0134:0.383832,(mll3161:0.414329, (bll8127:0.075244,Rpal1816:0.114557)N12:0.283918)N11:0.018694)N10:0.070693,(((PSPTO4961:0.141716,Pflu0200192:0.175463)N15:0.067453, (PA4965:0.228253,Mdeg02000624:0.279390)N16:0.041548)N14:0.278354,(PA4048:0.371880,Mdeg2586:0.361203)N17:0.132412)N13:0.058496) N9:0.062732,(Magn03006869:0.357174,bll3736:0.460751)N18:0.039089)N8:0.037214)N6:0.023450)N5:0.017432); <br />
<br />
|fin_output=<br />
<table class="tabdata"><br />
<tr class="grey"><br />
<td>Name</td><br />
<td>Father</td><br />
<td>Distance to father</td><br />
<td>Sons</td><br />
</tr> <br />
<tr><td>Cc1307</td><td>N1</td><td>0.37768</td><td>-</td></tr><tr><td>Rc1339</td><td>N3</td><td>0.0114698</td><td>-</td></tr><tr><td>Rp867</td><td>N3</td><td>0.0224624</td><td>-</td></tr><tr><td>Mmc12119</td><td>N4</td><td>0.415269</td><td>-</td></tr><tr><td>rsph03003184</td><td>N4</td><td>0.527451</td><td>-</td></tr><tr><td>Atu1893</td><td>N5</td><td>0.359069</td><td>-</td></tr><tr><td>BR0864</td><td>N7</td><td>0.251268</td><td>-</td></tr><tr><td>Mlr0565</td><td>N7</td><td>0.350268</td><td>-</td></tr><tr><td>Atu0134</td><td>N10</td><td>0.383832</td><td>-</td></tr><tr><td>mll3161</td><td>N11</td><td>0.414329</td><td>-</td></tr><tr><td>bll8127</td><td>N12</td><td>0.0752442</td><td>-</td></tr><tr><td>Rpal1816</td><td>N12</td><td>0.114557</td><td>-</td></tr><tr><td>PSPTO4961</td><td>N15</td><td>0.141716</td><td>-</td></tr><tr><td>Pflu0200192</td><td>N15</td><td>0.175463</td><td>-</td></tr><tr><td>PA4965</td><td>N16</td><td>0.228253</td><td>-</td></tr><tr><td>Mdeg02000624</td><td>N16</td><td>0.27939</td><td>-</td></tr><tr><td>PA4048</td><td>N17</td><td>0.37188</td><td>-</td></tr><tr><td>Mdeg2586</td><td>N17</td><td>0.361203</td><td>-</td></tr><tr><td>Magn03006869</td><td>N18</td><td>0.357174</td><td>-</td></tr><tr><td>bll3736</td><td>N18</td><td>0.460751</td><td>-</td></tr><tr><td>N1</td><td>root!</td><td>-</td><td>Cc1307 N2 N5</td></tr><tr><td>N2</td><td>N1</td><td>0.0471895</td><td>N3 N4</td></tr><tr><td>N3</td><td>N2</td><td>0.41982</td><td>Rc1339 Rp867</td></tr><tr><td>N4</td><td>N2</td><td>0.097539</td><td>Mmc12119 rsph03003184</td></tr><tr><td>N5</td><td>N1</td><td>0.0174322</td><td>Atu1893 N6</td></tr><tr><td>N6</td><td>N5</td><td>0.0234503</td><td>N7 N8</td></tr><tr><td>N7</td><td>N6</td><td>0.0925895</td><td>BR0864 Mlr0565</td></tr><tr><td>N8</td><td>N6</td><td>0.0372135</td><td>N9 N18</td></tr><tr><td>N9</td><td>N8</td><td>0.0627316</td><td>N10 N13</td></tr><tr><td>N10</td><td>N9</td><td>0.0706931</td><td>Atu0134 N11</td></tr><tr><td>N11</td><td>N10</td><td>0.0186936</td><td>mll3161 N12</td></tr><tr><td>N12</td><td>N11</td><td>0.283918</td><td>bll8127 Rpal1816</td></tr><tr><td>N13</td><td>N9</td><td>0.0584961</td><td>N14 N17</td></tr><tr><td>N14</td><td>N13</td><td>0.278354</td><td>N15 N16</td></tr><tr><td>N15</td><td>N14</td><td>0.0674532</td><td>PSPTO4961 Pflu0200192</td></tr><tr><td>N16</td><td>N14</td><td>0.0415478</td><td>PA4965 Mdeg02000624</td></tr><tr><td>N17</td><td>N13</td><td>0.132412</td><td>PA4048 Mdeg2586</td></tr><tr><td>N18</td><td>N8</td><td>0.0390885</td><td>Magn03006869 bll3736</td></tr><br />
</table><br />
<br />
<br />
|jpf_output=<br />
<table class="tabdata"><br />
<tr class="grey"><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
</tr><br />
<tr class="text"><td>0</td><td>1.34364e-012</td><td>24</td><td>4.2925e-014</td><td>48</td><td>2.07769e-025</td><td>72</td><td>1.0147e-025</td></tr><tr class="text"><td>1</td><td>2.90306e-005</td><td>25</td><td>1.83544e-020</td><td>49</td><td>7.87371e-011</td><td>73</td><td>2.81024e-016</td></tr><tr class="text"><td>2</td><td>3.77638e-006</td><td>26</td><td>2.27405e-018</td><td>50</td><td>0.00554436</td><td>74</td><td>0.000718715</td></tr><tr class="text"><td>3</td><td>0.000626383</td><td>27</td><td>3.66563e-027</td><td>51</td><td>0.000626383</td><td>75</td><td>1.80493e-006</td></tr><tr class="text"><td>4</td><td>9.71817e-006</td><td>28</td><td>5.75185e-029</td><td>52</td><td>1.11159e-024</td><td>76</td><td>0.000626383</td></tr><tr class="text"><td>5</td><td>5.10395e-012</td><td>29</td><td>1.04937e-025</td><td>53</td><td>9.67224e-013</td><td>77</td><td>3.02248e-011</td></tr><tr class="text"><td>6</td><td>1.26217e-018</td><td>30</td><td>1.8705e-018</td><td>54</td><td>1.9165e-030</td><td>78</td><td>1.72286e-010</td></tr><tr class="text"><td>7</td><td>5.141e-010</td><td>31</td><td>6.91318e-022</td><td>55</td><td>7.91261e-020</td><td>79</td><td>1.11666e-011</td></tr><tr class="text"><td>8</td><td>2.50935e-010</td><td>32</td><td>3.77638e-006</td><td>56</td><td>1.48236e-024</td><td>80</td><td>1.33506e-006</td></tr><tr class="text"><td>9</td><td>1.7462e-010</td><td>33</td><td>9.71817e-006</td><td>57</td><td>1.82131e-019</td><td>81</td><td>1.733e-024</td></tr><tr class="text"><td>10</td><td>1.28074e-014</td><td>34</td><td>7.55174e-010</td><td>58</td><td>6.38476e-010</td><td>82</td><td>9.35557e-020</td></tr><tr class="text"><td>11</td><td>1.09013e-028</td><td>35</td><td>0.000626383</td><td>59</td><td>1.36148e-026</td><td>83</td><td>2.67312e-009</td></tr><tr class="text"><td>12</td><td>2.77921e-023</td><td>36</td><td>4.65715e-030</td><td>60</td><td>3.14522e-009</td><td>84</td><td>1.19468e-022</td></tr><tr class="text"><td>13</td><td>6.82716e-023</td><td>37</td><td>4.14636e-019</td><td>61</td><td>3.50348e-006</td><td>85</td><td>9.67403e-015</td></tr><tr class="text"><td>14</td><td>2.03269e-007</td><td>38</td><td>8.67155e-021</td><td>62</td><td>4.95522e-020</td><td>86</td><td>2.13655e-018</td></tr><tr class="text"><td>15</td><td>5.99471e-024</td><td>39</td><td>6.12418e-012</td><td>63</td><td>7.59926e-011</td><td>87</td><td>2.32462e-025</td></tr><tr class="text"><td>16</td><td>1.66507e-018</td><td>40</td><td>2.53558e-015</td><td>64</td><td>2.7215e-022</td><td>88</td><td>4.30445e-019</td></tr><tr class="text"><td>17</td><td>4.74294e-012</td><td>41</td><td>3.92302e-018</td><td>65</td><td>8.76625e-012</td><td>89</td><td>3.68866e-019</td></tr><tr class="text"><td>18</td><td>2.38933e-007</td><td>42</td><td>1.64685e-013</td><td>66</td><td>8.94932e-020</td><td>90</td><td>3.60279e-026</td></tr><tr class="text"><td>19</td><td>6.18681e-016</td><td>43</td><td>2.32981e-025</td><td>67</td><td>6.81069e-013</td><td>91</td><td>4.8159e-012</td></tr><tr class="text"><td>20</td><td>1.87162e-020</td><td>44</td><td>2.66095e-014</td><td>68</td><td>2.80309e-014</td><td>92</td><td>7.89454e-029</td></tr><tr class="text"><td>21</td><td>1.41325e-024</td><td>45</td><td>1.00654e-019</td><td>69</td><td>1.19102e-028</td><td>93</td><td>6.57926e-013</td></tr><tr class="text"><td>22</td><td>5.33077e-023</td><td>46</td><td>1.60287e-024</td><td>70</td><td>3.23107e-012</td><td>94</td><td>8.52671e-019</td></tr><tr class="text"><td>23</td><td>1.19371e-020</td><td>47</td><td>9.22306e-013</td><td>71</td><td>1.96607e-019</td><td>95</td><td>7.87571e-007</td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-3428.24</td></tr><br />
</table><br />
<br />
<br />
<br />
|jrof_output=<br />
<align id="cog3577" folder="jrof"></align><br />
<br />
|mpf_output=<br />
<table class="tabdata"><br />
<tr class="grey"><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
</tr><br />
<tr class="text"><td>0</td><td>1.80582e-012</td><td>24</td><td>1.69502e-013</td><td>48</td><td>2.75228e-024</td><td>72</td><td>1.85251e-024</td></tr><tr class="text"><td>1</td><td>2.92304e-005</td><td>25</td><td>7.84775e-020</td><td>49</td><td>2.10545e-010</td><td>73</td><td>1.02465e-015</td></tr><tr class="text"><td>2</td><td>3.79614e-006</td><td>26</td><td>1.62879e-017</td><td>50</td><td>0.076748</td><td>74</td><td>0.000720076</td></tr><tr class="text"><td>3</td><td>0.000626705</td><td>27</td><td>2.52304e-026</td><td>51</td><td>0.000626705</td><td>75</td><td>1.92368e-006</td></tr><tr class="text"><td>4</td><td>9.77922e-006</td><td>28</td><td>1.19596e-027</td><td>52</td><td>2.3771e-023</td><td>76</td><td>0.000626705</td></tr><tr class="text"><td>5</td><td>7.70666e-012</td><td>29</td><td>8.536e-025</td><td>53</td><td>1.73267e-012</td><td>77</td><td>3.09773e-011</td></tr><tr class="text"><td>6</td><td>5.08442e-018</td><td>30</td><td>4.10688e-018</td><td>54</td><td>2.67044e-029</td><td>78</td><td>2.28963e-010</td></tr><tr class="text"><td>7</td><td>1.81423e-009</td><td>31</td><td>1.74533e-021</td><td>55</td><td>4.44621e-019</td><td>79</td><td>1.20122e-011</td></tr><tr class="text"><td>8</td><td>2.65162e-010</td><td>32</td><td>3.79614e-006</td><td>56</td><td>1.85173e-023</td><td>80</td><td>1.39913e-006</td></tr><tr class="text"><td>9</td><td>2.48847e-010</td><td>33</td><td>9.77922e-006</td><td>57</td><td>1.98711e-018</td><td>81</td><td>2.69086e-023</td></tr><tr class="text"><td>10</td><td>2.77317e-014</td><td>34</td><td>1.09471e-009</td><td>58</td><td>9.38164e-010</td><td>82</td><td>3.96295e-019</td></tr><tr class="text"><td>11</td><td>8.09735e-028</td><td>35</td><td>0.000626705</td><td>59</td><td>1.70881e-025</td><td>83</td><td>3.40201e-009</td></tr><tr class="text"><td>12</td><td>3.68933e-022</td><td>36</td><td>3.39915e-029</td><td>60</td><td>3.24023e-009</td><td>84</td><td>8.62342e-022</td></tr><tr class="text"><td>13</td><td>1.42431e-021</td><td>37</td><td>5.09608e-018</td><td>61</td><td>1.21169e-005</td><td>85</td><td>5.31376e-014</td></tr><tr class="text"><td>14</td><td>2.11042e-007</td><td>38</td><td>4.58757e-020</td><td>62</td><td>3.41773e-019</td><td>86</td><td>5.48279e-018</td></tr><tr class="text"><td>15</td><td>5.01155e-023</td><td>39</td><td>1.1494e-011</td><td>63</td><td>1.68689e-010</td><td>87</td><td>4.21793e-024</td></tr><tr class="text"><td>16</td><td>5.37545e-018</td><td>40</td><td>2.75308e-015</td><td>64</td><td>2.40671e-021</td><td>88</td><td>5.31678e-019</td></tr><tr class="text"><td>17</td><td>5.63428e-012</td><td>41</td><td>1.14821e-017</td><td>65</td><td>5.26466e-011</td><td>89</td><td>2.65059e-018</td></tr><tr class="text"><td>18</td><td>2.42151e-007</td><td>42</td><td>4.18346e-013</td><td>66</td><td>4.62217e-019</td><td>90</td><td>1.21368e-024</td></tr><tr class="text"><td>19</td><td>1.50733e-015</td><td>43</td><td>5.65816e-025</td><td>67</td><td>5.47849e-012</td><td>91</td><td>1.08706e-011</td></tr><tr class="text"><td>20</td><td>8.5699e-020</td><td>44</td><td>1.14263e-013</td><td>68</td><td>2.15054e-013</td><td>92</td><td>5.33312e-027</td></tr><tr class="text"><td>21</td><td>3.48943e-024</td><td>45</td><td>2.66574e-019</td><td>69</td><td>1.87531e-026</td><td>93</td><td>1.93197e-012</td></tr><tr class="text"><td>22</td><td>2.73029e-021</td><td>46</td><td>8.77322e-024</td><td>70</td><td>8.64622e-012</td><td>94</td><td>2.97193e-018</td></tr><tr class="text"><td>23</td><td>2.03014e-019</td><td>47</td><td>3.13272e-012</td><td>71</td><td>1.02213e-018</td><td>95</td><td>8.18661e-007</td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-3300.18</td></tr><br />
</table><br />
<br />
<br />
<br />
|mrof_output=<br />
<align id="cog3577" folder="mrof"></align><br />
<br />
|sequence_logo=<br />
[[Image:Logo_cog3577.png|500px|center]]<br />
<br />
|hmms=<br />
<pre><br />
>AP_cog3577 profile HMM generated consensus sequence<br />
VDTGASsVaLneedArrLGldpssldytvtvsTANGqtrAArvtLdrvqiGgItlrdVd<br />
AvVlkeGaqlsesLLGMSFLkrLesfevrggtLiL<br />
</pre><br />
<br />
|pairwise_alignment=<br />
<pre><br />
Domain 1 of 1, from 1 to 87: score 43.7, E = 7.2e-14<br />
<br />
DTG_ILG template *->vDTGAsvlsviskecklaqklgltrkkafdpSSYvCivtllsysqPs<br />
vDTGAs +++e +a +lg ++Ps<br />
AP_cog3577 1 VDTGASS-VALNEE--DARRLG---------------------LDPS 23 <br />
<br />
sktsttaqdtirgagGqskiyvSklktsgqirknllslvtikitkGnvTe<br />
s + t + + +a+Gq+++ ++ +++i G++ <br />
AP_cog3577 24 SLDYTVT---VSTANGQTRA------ARVTL-------DRVQI--GGI-- 53 <br />
<br />
venrslpsdgvflvv.tdpedqksrydvILGrldfLrqlnsvhidl<-*<br />
+ + + d +v+++ + + +LG+ fL+ l+s +++ <br />
AP_cog3577 54 --TLRDV-D--AVVLkEGAQL----SESLLGM-SFLKRLES--FEV 87 <br />
</pre><br />
}}</div>
imported>Gydbwiki