imported>Gydbwiki: New page: {{CAARD |pin_output= (RB280:0.746085,(SSO1395:0.457434,ST0709:0.380994)N2:0.217651,((all7265:0.579096, (PAE0993:0.413358,PAE0531:0.412493)N5:0.382074)N4:0.146186,(AF0612:0.797852, (SSO2164...

2009-05-08T11:39:01Z

New page: {{CAARD |pin_output= (RB280:0.746085,(SSO1395:0.457434,ST0709:0.380994)N2:0.217651,((all7265:0.579096, (PAE0993:0.413358,PAE0531:0.412493)N5:0.382074)N4:0.146186,(AF0612:0.797852, (SSO2164...

New page

{{CAARD
|pin_output=
(RB280:0.746085,(SSO1395:0.457434,ST0709:0.380994)N2:0.217651,((all7265:0.579096, (PAE0993:0.413358,PAE0531:0.412493)N5:0.382074)N4:0.146186,(AF0612:0.797852, (SSO2164:0.412159,(SS01929:0.196241,SS01523:0.000589)N8:0.548989)N7:0.144960)N6:0.129051)N3:0.058060);

|fin_output=
<table class="tabdata">
<tr class="grey">
<td>Name</td>
<td>Father</td>
<td>Distance to father</td>
<td>Sons</td>
</tr>
<tr><td>RB280</td><td>N1</td><td>0.746085</td><td>-</td></tr><tr><td>SSO1395</td><td>N2</td><td>0.457434</td><td>-</td></tr><tr><td>ST0709</td><td>N2</td><td>0.380994</td><td>-</td></tr><tr><td>all7265</td><td>N4</td><td>0.579096</td><td>-</td></tr><tr><td>PAE0993</td><td>N5</td><td>0.413358</td><td>-</td></tr><tr><td>PAE0531</td><td>N5</td><td>0.412493</td><td>-</td></tr><tr><td>AF0612</td><td>N6</td><td>0.797852</td><td>-</td></tr><tr><td>SSO2164</td><td>N7</td><td>0.412159</td><td>-</td></tr><tr><td>SS01929</td><td>N8</td><td>0.196241</td><td>-</td></tr><tr><td>SS01523</td><td>N8</td><td>0.000589257</td><td>-</td></tr><tr><td>N1</td><td>root!</td><td>-</td><td>-</td></tr><tr><td>N2</td><td>N1</td><td>0.217651</td><td>-</td></tr><tr><td>N3</td><td>N1</td><td>0.0580597</td><td>-</td></tr><tr><td>N4</td><td>N3</td><td>0.146186</td><td>-</td></tr><tr><td>N5</td><td>N4</td><td>0.382074</td><td>-</td></tr><tr><td>N6</td><td>N3</td><td>0.129051</td><td>-</td></tr><tr><td>N7</td><td>N6</td><td>0.14496</td><td>-</td></tr><tr><td>N8</td><td>N7</td><td>0.548989</td><td>-</td></tr>
</table>

|jpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
</tr>
<tr class="text"><td>0</td><td>2.07755e-007</td><td>32</td><td>0.0114254</td><td>64</td><td>1.12465e-010</td><td>96</td><td>3.41864e-011</td></tr><tr class="text"><td>1</td><td>6.16028e-006</td><td>33</td><td>0.00633147</td><td>65</td><td>4.6863e-007</td><td>97</td><td>0.000126396</td></tr><tr class="text"><td>2</td><td>2.84179e-005</td><td>34</td><td>5.99032e-005</td><td>66</td><td>6.26756e-014</td><td>98</td><td>0.00503064</td></tr><tr class="text"><td>3</td><td>0.00162644</td><td>35</td><td>5.73143e-013</td><td>67</td><td>4.16281e-010</td><td>99</td><td>1.16824e-012</td></tr><tr class="text"><td>4</td><td>5.7979e-007</td><td>36</td><td>4.87795e-010</td><td>68</td><td>8.52815e-014</td><td>100</td><td>0.00269989</td></tr><tr class="text"><td>5</td><td>1.17327e-010</td><td>37</td><td>0.000215497</td><td>69</td><td>9.18399e-011</td><td>101</td><td>1.05534e-009</td></tr><tr class="text"><td>6</td><td>0.00274713</td><td>38</td><td>1.10747e-009</td><td>70</td><td>1.77576e-012</td><td>102</td><td>1.14876e-008</td></tr><tr class="text"><td>7</td><td>1.63818e-011</td><td>39</td><td>3.22146e-013</td><td>71</td><td>8.2412e-010</td><td>103</td><td>3.33415e-006</td></tr><tr class="text"><td>8</td><td>0.0221475</td><td>40</td><td>2.29634e-013</td><td>72</td><td>0.00946478</td><td>104</td><td>6.58553e-012</td></tr><tr class="text"><td>9</td><td>1.16265e-009</td><td>41</td><td>1.16653e-014</td><td>73</td><td>0.00443233</td><td>105</td><td>3.18635e-011</td></tr><tr class="text"><td>10</td><td>4.36039e-010</td><td>42</td><td>3.00558e-014</td><td>74</td><td>0.00401331</td><td>106</td><td>1.1147e-009</td></tr><tr class="text"><td>11</td><td>7.79227e-010</td><td>43</td><td>8.0983e-013</td><td>75</td><td>1.46555e-011</td><td>107</td><td>5.35543e-007</td></tr><tr class="text"><td>12</td><td>3.48535e-009</td><td>44</td><td>4.56434e-011</td><td>76</td><td>8.94946e-015</td><td>108</td><td>4.38763e-010</td></tr><tr class="text"><td>13</td><td>5.96252e-016</td><td>45</td><td>3.7383e-010</td><td>77</td><td>3.18603e-006</td><td>109</td><td>5.35656e-012</td></tr><tr class="text"><td>14</td><td>2.81093e-011</td><td>46</td><td>5.02626e-014</td><td>78</td><td>3.37571e-010</td><td>110</td><td>9.44788e-013</td></tr><tr class="text"><td>15</td><td>0.00389872</td><td>47</td><td>2.66827e-007</td><td>79</td><td>1.11485e-009</td><td>111</td><td>4.54911e-010</td></tr><tr class="text"><td>16</td><td>2.83014e-009</td><td>48</td><td>1.74806e-006</td><td>80</td><td>8.27156e-014</td><td>112</td><td>0.00276597</td></tr><tr class="text"><td>17</td><td>7.85328e-010</td><td>49</td><td>6.62296e-015</td><td>81</td><td>0.00542996</td><td>113</td><td>5.74397e-011</td></tr><tr class="text"><td>18</td><td>7.93748e-013</td><td>50</td><td>2.06042e-008</td><td>82</td><td>0.00406087</td><td>114</td><td>3.69354e-011</td></tr><tr class="text"><td>19</td><td>1.07462e-007</td><td>51</td><td>2.1064e-009</td><td>83</td><td>1.66109e-007</td><td>115</td><td>1.38784e-005</td></tr><tr class="text"><td>20</td><td>0.000977573</td><td>52</td><td>3.14138e-010</td><td>84</td><td>2.00264e-010</td><td>116</td><td>4.35012e-007</td></tr><tr class="text"><td>21</td><td>5.70249e-005</td><td>53</td><td>5.08745e-012</td><td>85</td><td>2.39273e-012</td><td>117</td><td>6.2004e-009</td></tr><tr class="text"><td>22</td><td>4.65245e-010</td><td>54</td><td>8.00885e-012</td><td>86</td><td>1.85687e-015</td><td>118</td><td>8.63412e-011</td></tr><tr class="text"><td>23</td><td>9.09187e-005</td><td>55</td><td>3.866e-009</td><td>87</td><td>3.50557e-011</td><td>119</td><td>2.58201e-010</td></tr><tr class="text"><td>24</td><td>1.5792e-009</td><td>56</td><td>2.57977e-006</td><td>88</td><td>1.78112e-006</td><td>120</td><td>9.63224e-006</td></tr><tr class="text"><td>25</td><td>0.0114254</td><td>57</td><td>3.3233e-011</td><td>89</td><td>1.59469e-012</td><td>121</td><td>1.88822e-010</td></tr><tr class="text"><td>26</td><td>0.0120658</td><td>58</td><td>1.19256e-010</td><td>90</td><td>1.9257e-006</td><td>122</td><td>3.12042e-014</td></tr><tr class="text"><td>27</td><td>1.0173e-006</td><td>59</td><td>1.49794e-009</td><td>91</td><td>6.15001e-007</td><td>123</td><td>1.74136e-014</td></tr><tr class="text"><td>28</td><td>7.64498e-010</td><td>60</td><td>2.16886e-009</td><td>92</td><td>1.02648e-006</td><td>124</td><td>9.66364e-015</td></tr><tr class="text"><td>29</td><td>1.31444e-007</td><td>61</td><td>1.22629e-011</td><td>93</td><td>0.00162644</td><td>125</td><td>2.83992e-016</td></tr><tr class="text"><td>30</td><td>0.000187558</td><td>62</td><td>5.0934e-007</td><td>94</td><td>8.81775e-011</td><td> </td><td> </td></tr><tr class="text"><td>31</td><td>0.0203703</td><td>63</td><td>6.34388e-007</td><td>95</td><td>4.276e-010</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-2384.59</td></tr>
</table>

|jrof_output=
<align id="cog5550" folder="jrof"></align>

|mpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
</tr>
<tr class="text"><td>0</td><td>3.26027e-007</td><td>32</td><td>0.040126</td><td>64</td><td>1.75613e-010</td><td>96</td><td>1.1148e-010</td></tr><tr class="text"><td>1</td><td>6.2885e-006</td><td>33</td><td>0.066005</td><td>65</td><td>3.39123e-006</td><td>97</td><td>0.000132659</td></tr><tr class="text"><td>2</td><td>2.88831e-005</td><td>34</td><td>0.00036467</td><td>66</td><td>3.87814e-013</td><td>98</td><td>0.051691</td></tr><tr class="text"><td>3</td><td>0.00162883</td><td>35</td><td>1.804e-012</td><td>67</td><td>7.52485e-010</td><td>99</td><td>5.88923e-012</td></tr><tr class="text"><td>4</td><td>6.68679e-007</td><td>36</td><td>9.85517e-010</td><td>68</td><td>1.1913e-012</td><td>100</td><td>0.068765</td></tr><tr class="text"><td>5</td><td>5.31867e-010</td><td>37</td><td>0.00180356</td><td>69</td><td>2.92944e-010</td><td>101</td><td>2.15313e-009</td></tr><tr class="text"><td>6</td><td>0.00352469</td><td>38</td><td>3.47166e-008</td><td>70</td><td>3.84059e-011</td><td>102</td><td>3.62088e-008</td></tr><tr class="text"><td>7</td><td>2.68261e-011</td><td>39</td><td>1.3709e-011</td><td>71</td><td>1.2703e-008</td><td>103</td><td>6.49747e-005</td></tr><tr class="text"><td>8</td><td>0.091904</td><td>40</td><td>6.25959e-012</td><td>72</td><td>0.06183</td><td>104</td><td>2.93241e-010</td></tr><tr class="text"><td>9</td><td>6.79276e-009</td><td>41</td><td>1.11971e-013</td><td>73</td><td>0.053761</td><td>105</td><td>9.21871e-011</td></tr><tr class="text"><td>10</td><td>3.09825e-009</td><td>42</td><td>3.45282e-013</td><td>74</td><td>0.058565</td><td>106</td><td>7.11178e-009</td></tr><tr class="text"><td>11</td><td>3.42832e-009</td><td>43</td><td>1.06651e-011</td><td>75</td><td>2.61063e-010</td><td>107</td><td>9.20531e-007</td></tr><tr class="text"><td>12</td><td>9.54289e-009</td><td>44</td><td>9.10074e-011</td><td>76</td><td>3.9142e-014</td><td>108</td><td>1.305e-009</td></tr><tr class="text"><td>13</td><td>5.53359e-015</td><td>45</td><td>2.36183e-009</td><td>77</td><td>8.57053e-005</td><td>109</td><td>1.90838e-011</td></tr><tr class="text"><td>14</td><td>3.88989e-011</td><td>46</td><td>1.25477e-013</td><td>78</td><td>8.71339e-010</td><td>110</td><td>7.8035e-012</td></tr><tr class="text"><td>15</td><td>0.053761</td><td>47</td><td>2.72383e-007</td><td>79</td><td>4.77677e-009</td><td>111</td><td>3.30683e-009</td></tr><tr class="text"><td>16</td><td>1.04919e-008</td><td>48</td><td>7.58499e-006</td><td>80</td><td>9.5676e-013</td><td>112</td><td>0.042645</td></tr><tr class="text"><td>17</td><td>1.6877e-009</td><td>49</td><td>4.73034e-014</td><td>81</td><td>0.0520384</td><td>113</td><td>1.5211e-010</td></tr><tr class="text"><td>18</td><td>3.55651e-012</td><td>50</td><td>9.93123e-008</td><td>82</td><td>0.068765</td><td>114</td><td>5.39737e-011</td></tr><tr class="text"><td>19</td><td>1.19602e-007</td><td>51</td><td>7.19671e-009</td><td>83</td><td>5.88856e-006</td><td>115</td><td>0.00034091</td></tr><tr class="text"><td>20</td><td>0.00584221</td><td>52</td><td>1.20571e-009</td><td>84</td><td>3.12541e-010</td><td>116</td><td>2.97634e-006</td></tr><tr class="text"><td>21</td><td>0.000555916</td><td>53</td><td>2.32515e-011</td><td>85</td><td>6.80113e-012</td><td>117</td><td>5.27331e-008</td></tr><tr class="text"><td>22</td><td>1.58166e-009</td><td>54</td><td>3.61172e-011</td><td>86</td><td>1.82965e-014</td><td>118</td><td>4.06358e-010</td></tr><tr class="text"><td>23</td><td>0.00219016</td><td>55</td><td>2.26234e-008</td><td>87</td><td>6.13497e-011</td><td>119</td><td>3.1414e-010</td></tr><tr class="text"><td>24</td><td>3.7401e-009</td><td>56</td><td>9.68935e-006</td><td>88</td><td>4.66399e-006</td><td>120</td><td>1.31871e-005</td></tr><tr class="text"><td>25</td><td>0.040126</td><td>57</td><td>6.03357e-010</td><td>89</td><td>1.12967e-011</td><td>121</td><td>8.67366e-010</td></tr><tr class="text"><td>26</td><td>0.050901</td><td>58</td><td>3.8868e-010</td><td>90</td><td>5.48459e-006</td><td>122</td><td>5.78527e-013</td></tr><tr class="text"><td>27</td><td>7.4096e-006</td><td>59</td><td>1.00293e-008</td><td>91</td><td>7.05281e-007</td><td>123</td><td>2.83184e-013</td></tr><tr class="text"><td>28</td><td>1.34019e-009</td><td>60</td><td>1.47587e-008</td><td>92</td><td>1.8015e-006</td><td>124</td><td>3.47157e-014</td></tr><tr class="text"><td>29</td><td>9.23977e-007</td><td>61</td><td>3.13167e-011</td><td>93</td><td>0.00162883</td><td>125</td><td>9.77076e-016</td></tr><tr class="text"><td>30</td><td>0.0026529</td><td>62</td><td>6.51112e-007</td><td>94</td><td>1.89476e-010</td><td> </td><td> </td></tr><tr class="text"><td>31</td><td>0.073152</td><td>63</td><td>1.54459e-005</td><td>95</td><td>9.02772e-010</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-2184.87</td></tr>
</table>

|mrof_output=
<align id="cog5550" folder="mrof"></align>

|sequence_logo=
[[Image:Logo_cog5550.png|500px|center]]

|hmms=
<pre>
>AP_cog5550 profile HMM generated consensus sequence
IDTGFnGylliPqeifdklpsleltdnreyttanGkikstvfatieIgnklnrdaarvl
afspviepnLLGtelLkklglridykdgklEKivldp
</pre>

|pairwise_alignment=
<pre>
Domain 1 of 1, from 1 to 84: score 42.9, E = 1.2e-13

DTG_ILG template *->vDTGAsvlsviskecklaqklgltrkkafdpSSYvCivtllsysqPs
+DTG + + +i++e +++kl+ ++ +
AP_cog5550 1 IDTGFNGYLLIPQE--IFDKLPS--------------------LELT 25

sktsttaqdtirgagGqskiyvSklktsgqirknllslvtikitkGnvTe
++ ++a+G ki k+++ ti+i G
AP_cog5550 26 DNRE------YTTANG--KI-----KSTV-F-------ATIEI--G---- 48

venrslpsdgvflvv.tdpedqksrydvILGrldfLrqlnsvhidl<-*
+l +d+ +v+ +p++ + +LG +L++l+ id+
AP_cog5550 49 ---NKLNRDA-ARVLaFSPVI----EPNLLGT-ELLKKLGLR-IDY 84
</pre>
}}

CAARD:COG5550 - Revision history

imported>Gydbwiki: New page: {{CAARD |pin_output= (RB280:0.746085,(SSO1395:0.457434,ST0709:0.380994)N2:0.217651,((all7265:0.579096, (PAE0993:0.413358,PAE0531:0.412493)N5:0.382074)N4:0.146186,(AF0612:0.797852, (SSO2164...