CAARD:CRM - Revision history

imported>Gydbwiki: New page: {{CAARD |pin_output= (Cereba:0.256601,CRM:0.108854,Beetle1:0.406445); |fin_output=
2009-05-08T09:25:13Z

New page: {{CAARD |pin_output= (Cereba:0.256601,CRM:0.108854,Beetle1:0.406445); |fin_output= <table class="tabdata"> <tr class="grey"> <td>Name</td> <td>Father</td> <td>Distance to father</td> <td...

New page
{{CAARD
|pin_output=
(Cereba:0.256601,CRM:0.108854,Beetle1:0.406445);

|fin_output=
<table class="tabdata">
<tr class="grey">
<td>Name</td>
<td>Father</td>
<td>Distance to father</td>
<td>Sons</td>
<tr>
<tr><td>Cereba</td><td>N1</td><td>0.256601</td><td>-</td></tr><tr><td>CRM</td><td>N1</td><td>0.108854</td><td>-</td></tr><tr><td>Beetle1</td><td>N1</td><td>0.406445</td><td>-</td></tr><tr><td>N1</td><td>root!</td><td>-</td><td>Cereba CRM Beetle1</td></tr>
</table>

|jpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<tr>
<tr class="text"><td>0</td><td>0.0211493</td><td>23</td><td>0.00219101</td><td>46</td><td>0.000448108</td><td>69</td><td>0.0128177</td></tr><tr class="text"><td>1</td><td>0.0237575</td><td>24</td><td>0.00965986</td><td>47</td><td>0.00345732</td><td>70</td><td>5.74948e-005</td></tr><tr class="text"><td>2</td><td>0.0447096</td><td>25</td><td>0.0292434</td><td>48</td><td>5.61624e-005</td><td>71</td><td>0.00345732</td></tr><tr class="text"><td>3</td><td>0.0447096</td><td>26</td><td>0.000229695</td><td>49</td><td>0.0247346</td><td>72</td><td>0.0556344</td></tr><tr class="text"><td>4</td><td>0.0234289</td><td>27</td><td>0.0292434</td><td>50</td><td>0.000766687</td><td>73</td><td>0.0556344</td></tr><tr class="text"><td>5</td><td>0.0128177</td><td>28</td><td>0.0202687</td><td>51</td><td>0.000430744</td><td>74</td><td>0.0447096</td></tr><tr class="text"><td>6</td><td>0.00107028</td><td>29</td><td>1.16331e-005</td><td>52</td><td>0.00155438</td><td>75</td><td>0.0239428</td></tr><tr class="text"><td>7</td><td>0.016253</td><td>30</td><td>0.00230716</td><td>53</td><td>0.0344521</td><td>76</td><td>0.0292434</td></tr><tr class="text"><td>8</td><td>0.00284504</td><td>31</td><td>0.00103811</td><td>54</td><td>0.00179417</td><td>77</td><td>6.47616e-005</td></tr><tr class="text"><td>9</td><td>0.0303115</td><td>32</td><td>0.0112058</td><td>55</td><td>0.0202687</td><td>78</td><td>0.0184639</td></tr><tr class="text"><td>10</td><td>0.0234289</td><td>33</td><td>0.00143906</td><td>56</td><td>1.34949e-005</td><td>79</td><td>0.000605286</td></tr><tr class="text"><td>11</td><td>7.12784e-005</td><td>34</td><td>0.016253</td><td>57</td><td>0.00134632</td><td>80</td><td>0.0237575</td></tr><tr class="text"><td>12</td><td>7.50523e-005</td><td>35</td><td>0.00193199</td><td>58</td><td>1.45485e-006</td><td>81</td><td>0.000119544</td></tr><tr class="text"><td>13</td><td>0.00967887</td><td>36</td><td>0.0410283</td><td>59</td><td>0.0266469</td><td>82</td><td>0.000263106</td></tr><tr class="text"><td>14</td><td>0.0266469</td><td>37</td><td>0.0447096</td><td>60</td><td>0.000121758</td><td>83</td><td>3.04263e-006</td></tr><tr class="text"><td>15</td><td>0.030706</td><td>38</td><td>0.000808785</td><td>61</td><td>0.0128177</td><td>84</td><td>1.1687e-005</td></tr><tr class="text"><td>16</td><td>0.0299323</td><td>39</td><td>0.0266469</td><td>62</td><td>0.0237575</td><td>85</td><td>0.00965986</td></tr><tr class="text"><td>17</td><td>0.0556344</td><td>40</td><td>3.92484e-005</td><td>63</td><td>0.000229571</td><td>86</td><td>1.16958e-005</td></tr><tr class="text"><td>18</td><td>7.18365e-005</td><td>41</td><td>0.000178452</td><td>64</td><td>0.0266469</td><td>87</td><td>0.0447096</td></tr><tr class="text"><td>19</td><td>0.000287918</td><td>42</td><td>0.000106535</td><td>65</td><td>0.0292434</td><td>88</td><td>0.0239428</td></tr><tr class="text"><td>20</td><td>0.000774508</td><td>43</td><td>0.00253197</td><td>66</td><td>0.00967887</td><td>89</td><td>0.000780781</td></tr><tr class="text"><td>21</td><td>0.0215728</td><td>44</td><td>3.72616e-006</td><td>67</td><td>1.67007e-005</td><td> </td><td> </td></tr><tr class="text"><td>22</td><td>3.47091e-006</td><td>45</td><td>0.00257779</td><td>68</td><td>0.0303115</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-550.235</td></tr>
</table>

|jrof_output=
<align id="crm" folder="jrof"></align>

|mpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<tr>
<tr class="text"><td>0</td><td>0.0211946</td><td>23</td><td>0.00220946</td><td>46</td><td>0.000450598</td><td>69</td><td>0.0128178</td></tr><tr class="text"><td>1</td><td>0.0237825</td><td>24</td><td>0.00966114</td><td>47</td><td>0.00377161</td><td>70</td><td>6.70508e-005</td></tr><tr class="text"><td>2</td><td>0.0447133</td><td>25</td><td>0.0292455</td><td>48</td><td>6.51791e-005</td><td>71</td><td>0.00377161</td></tr><tr class="text"><td>3</td><td>0.0447133</td><td>26</td><td>0.000231616</td><td>49</td><td>0.0247376</td><td>72</td><td>0.0556509</td></tr><tr class="text"><td>4</td><td>0.0234574</td><td>27</td><td>0.0292455</td><td>50</td><td>0.00101961</td><td>73</td><td>0.0556509</td></tr><tr class="text"><td>5</td><td>0.0128178</td><td>28</td><td>0.020271</td><td>51</td><td>0.000436796</td><td>74</td><td>0.0447133</td></tr><tr class="text"><td>6</td><td>0.00108243</td><td>29</td><td>1.29072e-005</td><td>52</td><td>0.00158791</td><td>75</td><td>0.023957</td></tr><tr class="text"><td>7</td><td>0.0162604</td><td>30</td><td>0.00235212</td><td>53</td><td>0.051544</td><td>76</td><td>0.0292455</td></tr><tr class="text"><td>8</td><td>0.00288471</td><td>31</td><td>0.00105534</td><td>54</td><td>0.00191734</td><td>77</td><td>6.4937e-005</td></tr><tr class="text"><td>9</td><td>0.0303406</td><td>32</td><td>0.0112058</td><td>55</td><td>0.020271</td><td>78</td><td>0.0184679</td></tr><tr class="text"><td>10</td><td>0.0234574</td><td>33</td><td>0.00149828</td><td>56</td><td>2.66028e-005</td><td>79</td><td>0.000607247</td></tr><tr class="text"><td>11</td><td>7.44576e-005</td><td>34</td><td>0.0162604</td><td>57</td><td>0.00140683</td><td>80</td><td>0.0237825</td></tr><tr class="text"><td>12</td><td>9.64097e-005</td><td>35</td><td>0.00196607</td><td>58</td><td>2.04142e-006</td><td>81</td><td>0.000130744</td></tr><tr class="text"><td>13</td><td>0.00968003</td><td>36</td><td>0.0414349</td><td>59</td><td>0.0267146</td><td>82</td><td>0.0002917</td></tr><tr class="text"><td>14</td><td>0.0267146</td><td>37</td><td>0.0447133</td><td>60</td><td>0.00012316</td><td>83</td><td>3.87822e-006</td></tr><tr class="text"><td>15</td><td>0.0307384</td><td>38</td><td>0.000815057</td><td>61</td><td>0.0128178</td><td>84</td><td>1.40677e-005</td></tr><tr class="text"><td>16</td><td>0.0299508</td><td>39</td><td>0.0267146</td><td>62</td><td>0.0237825</td><td>85</td><td>0.00966114</td></tr><tr class="text"><td>17</td><td>0.0556509</td><td>40</td><td>4.01818e-005</td><td>63</td><td>0.000233756</td><td>86</td><td>1.35497e-005</td></tr><tr class="text"><td>18</td><td>0.000123627</td><td>41</td><td>0.00018162</td><td>64</td><td>0.0267146</td><td>87</td><td>0.0447133</td></tr><tr class="text"><td>19</td><td>0.000291539</td><td>42</td><td>0.000107861</td><td>65</td><td>0.0292455</td><td>88</td><td>0.023957</td></tr><tr class="text"><td>20</td><td>0.000786843</td><td>43</td><td>0.00269158</td><td>66</td><td>0.00968003</td><td>89</td><td>0.00101685</td></tr><tr class="text"><td>21</td><td>0.0215902</td><td>44</td><td>6.88599e-006</td><td>67</td><td>2.49929e-005</td><td> </td><td> </td></tr><tr class="text"><td>22</td><td>5.75137e-006</td><td>45</td><td>0.00262083</td><td>68</td><td>0.0303406</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-544.031</td></tr>
</table>

|mrof_output=
<align id="crm" folder="mrof"></align>

|sequence_logo=
[[Image:Logo_crm.png|500px|center]]

|hmms=
<pre>
>AP_crm profile HMM generated consensus sequence
iDGGsCnnlAssdmvEKLslttkpHPkPYkiqWlnnsGkvkvtklvrisFsigdsYsdv
vdCDvvPmdACniLLGRPwqfDketvHnGRt
</pre>

|pairwise_alignment=
<pre>
Domain 1 of 1, from 1 to 90: score 53.1, E = 1e-16

DTG_ILG template ->vDTGAsvlsviskecklaqklgltrkkafdpSSYvCivtllsysqPs
+D G++ +++s + +++kl lt ++P+
AP_crm 1 IDGGSCN-NLASSD--MVEKLSLT-------------------TKPH 25

sktsttaqdtirgagGqskiyvSklktsgqirknllslvtikitkGnvTe
k+ + i+ +++ k+ k++ ++r ++++i G
AP_crm 26 PKPYK-----IQWLNNSGKV-----KVTKLVR------ISFSI--G---- 53

venrslpsdgvflvvtdpedqksrydvILGrldfLrqlnsvh.idl<-
+++s + d + vv ++++ ++++LGr ++ ++++vh+++
AP_crm 54 -DSYSDVVD--CDVV-PMDA----CNILLGR-PWQFDKETVHnGRT 90
</pre>
}}

Name Father Distance to father