CAARD:Cer2-3 - Revision history

imported>Gydbwiki: New page: {{CAARD |pin_output= (N1:0.0,Cer2:0.300000); |fin_output= ...
2009-05-08T13:24:16Z
New page: {{CAARD |pin_output= (N1:0.0,Cer2:0.300000); |fin_output= <table class="tabdata"> <tr class="grey"> <td>Name</td> <td>Father</td> <td>Distance to father</td> <td>Sons</td> </tr> ...
New page
{{CAARD
|pin_output=
(N1:0.0,Cer2:0.300000);

|fin_output=
<table class="tabdata">
<tr class="grey">
<td>Name</td>
<td>Father</td>
<td>Distance to father</td>
<td>Sons</td>
</tr>
<tr><td>Cer2</td><td>N1</td><td>0.3</td><td>-</td></tr><tr><td>Cer3</td><td>N1</td><td>0.3</td><td>-</td></tr><tr><td>N1</td><td>Root!</td><td>-</td><td>Cer2 Cer3</td></tr>
</table>

|jpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
</tr>
<tr class="text"><td>0</td><td>0.032548</td><td>24</td><td>0.00149859</td><td>48</td><td>0.0275402</td><td>72</td><td>0.0498761</td></tr><tr class="text"><td>1</td><td>0.028196</td><td>25</td><td>0.000217183</td><td>49</td><td>0.00124806</td><td>73</td><td>0.000333993</td></tr><tr class="text"><td>2</td><td>0.0269084</td><td>26</td><td>9.06167e-005</td><td>50</td><td>0.0259827</td><td>74</td><td>0.0224481</td></tr><tr class="text"><td>3</td><td>0.0498761</td><td>27</td><td>0.0201276</td><td>51</td><td>0.0498761</td><td>75</td><td>0.0220105</td></tr><tr class="text"><td>4</td><td>0.0372241</td><td>28</td><td>0.000624535</td><td>52</td><td>0.00277478</td><td>76</td><td>0.0275402</td></tr><tr class="text"><td>5</td><td>0.0201276</td><td>29</td><td>0.00030487</td><td>53</td><td>0.000884248</td><td>77</td><td>0.0259827</td></tr><tr class="text"><td>6</td><td>0.0259827</td><td>30</td><td>0.0372241</td><td>54</td><td>0.000832469</td><td>78</td><td>0.000427678</td></tr><tr class="text"><td>7</td><td>0.0269084</td><td>31</td><td>0.032548</td><td>55</td><td>0.00496762</td><td>79</td><td>0.0498761</td></tr><tr class="text"><td>8</td><td>0.032548</td><td>32</td><td>0.0498761</td><td>56</td><td>0.000260032</td><td>80</td><td>0.0201276</td></tr><tr class="text"><td>9</td><td>0.00312844</td><td>33</td><td>0.00189948</td><td>57</td><td>0.000884248</td><td>81</td><td>0.028196</td></tr><tr class="text"><td>10</td><td>0.0297219</td><td>34</td><td>0.0498761</td><td>58</td><td>0.0283934</td><td>82</td><td>0.00141755</td></tr><tr class="text"><td>11</td><td>0.003304</td><td>35</td><td>0.0498761</td><td>59</td><td>0.032548</td><td>83</td><td>0.0621819</td></tr><tr class="text"><td>12</td><td>0.00173055</td><td>36</td><td>0.000597464</td><td>60</td><td>0.0117064</td><td>84</td><td>0.0297219</td></tr><tr class="text"><td>13</td><td>0.00197082</td><td>37</td><td>0.000285097</td><td>61</td><td>0.0275402</td><td>85</td><td>0.003304</td></tr><tr class="text"><td>14</td><td>0.0621819</td><td>38</td><td>0.032548</td><td>62</td><td>0.0269084</td><td>86</td><td>0.0621819</td></tr><tr class="text"><td>15</td><td>0.0347441</td><td>39</td><td>0.000484659</td><td>63</td><td>0.000934252</td><td>87</td><td>0.0330756</td></tr><tr class="text"><td>16</td><td>0.0498761</td><td>40</td><td>0.0118227</td><td>64</td><td>0.0498761</td><td>88</td><td>0.000992501</td></tr><tr class="text"><td>17</td><td>0.0621819</td><td>41</td><td>0.00496762</td><td>65</td><td>0.000638063</td><td>89</td><td>0.0275402</td></tr><tr class="text"><td>18</td><td>0.0498761</td><td>42</td><td>0.0498761</td><td>66</td><td>0.0141207</td><td>90</td><td>0.000870203</td></tr><tr class="text"><td>19</td><td>0.0259827</td><td>43</td><td>0.0297219</td><td>67</td><td>0.0118227</td><td>91</td><td>0.0275402</td></tr><tr class="text"><td>20</td><td>0.000428072</td><td>44</td><td>0.0372241</td><td>68</td><td>0.0330756</td><td>92</td><td>0.00173055</td></tr><tr class="text"><td>21</td><td>0.0283934</td><td>45</td><td>0.00496762</td><td>69</td><td>0.00405512</td><td>93</td><td>0.0224481</td></tr><tr class="text"><td>22</td><td>0.000342861</td><td>46</td><td>0.032548</td><td>70</td><td>0.0259827</td><td> </td><td> </td></tr><tr class="text"><td>23</td><td>0.000499456</td><td>47</td><td>0.0011501</td><td>71</td><td>0.00173055</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-453.094</td></tr>
</table>

|jrof_output=
<align id="cer2_3" folder="jrof"></align>

|mpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
</tr>
<tr class="text"><td>0</td><td>0.0338425</td><td>24</td><td>0.00308282</td><td>48</td><td>0.0277081</td><td>72</td><td>0.050169</td></tr><tr class="text"><td>1</td><td>0.028886</td><td>25</td><td>0.000610082</td><td>49</td><td>0.00278997</td><td>73</td><td>0.000940052</td></tr><tr class="text"><td>2</td><td>0.0276271</td><td>26</td><td>0.000287148</td><td>50</td><td>0.0269992</td><td>74</td><td>0.0225776</td></tr><tr class="text"><td>3</td><td>0.050169</td><td>27</td><td>0.0205182</td><td>51</td><td>0.050169</td><td>75</td><td>0.0222665</td></tr><tr class="text"><td>4</td><td>0.0382672</td><td>28</td><td>0.00150921</td><td>52</td><td>0.00596595</td><td>76</td><td>0.0277081</td></tr><tr class="text"><td>5</td><td>0.0205182</td><td>29</td><td>0.000765612</td><td>53</td><td>0.00186039</td><td>77</td><td>0.0269992</td></tr><tr class="text"><td>6</td><td>0.0269992</td><td>30</td><td>0.0382672</td><td>54</td><td>0.00224015</td><td>78</td><td>0.000936449</td></tr><tr class="text"><td>7</td><td>0.0276271</td><td>31</td><td>0.0338425</td><td>55</td><td>0.0102288</td><td>79</td><td>0.050169</td></tr><tr class="text"><td>8</td><td>0.0338425</td><td>32</td><td>0.050169</td><td>56</td><td>0.000821372</td><td>80</td><td>0.0205182</td></tr><tr class="text"><td>9</td><td>0.00680829</td><td>33</td><td>0.0038781</td><td>57</td><td>0.00186039</td><td>81</td><td>0.028886</td></tr><tr class="text"><td>10</td><td>0.0307625</td><td>34</td><td>0.050169</td><td>58</td><td>0.0288953</td><td>82</td><td>0.00322796</td></tr><tr class="text"><td>11</td><td>0.00686751</td><td>35</td><td>0.050169</td><td>59</td><td>0.0338425</td><td>83</td><td>0.0628339</td></tr><tr class="text"><td>12</td><td>0.00373254</td><td>36</td><td>0.00124811</td><td>60</td><td>0.0118167</td><td>84</td><td>0.0307625</td></tr><tr class="text"><td>13</td><td>0.00479559</td><td>37</td><td>0.000774109</td><td>61</td><td>0.0277081</td><td>85</td><td>0.00686751</td></tr><tr class="text"><td>14</td><td>0.0628339</td><td>38</td><td>0.0338425</td><td>62</td><td>0.0276271</td><td>86</td><td>0.0628339</td></tr><tr class="text"><td>15</td><td>0.0353273</td><td>39</td><td>0.00128345</td><td>63</td><td>0.00216192</td><td>87</td><td>0.0332631</td></tr><tr class="text"><td>16</td><td>0.050169</td><td>40</td><td>0.0119402</td><td>64</td><td>0.050169</td><td>88</td><td>0.00219789</td></tr><tr class="text"><td>17</td><td>0.0628339</td><td>41</td><td>0.0102288</td><td>65</td><td>0.00139598</td><td>89</td><td>0.0277081</td></tr><tr class="text"><td>18</td><td>0.050169</td><td>42</td><td>0.050169</td><td>66</td><td>0.0141382</td><td>90</td><td>0.00202297</td></tr><tr class="text"><td>19</td><td>0.0269992</td><td>43</td><td>0.0307625</td><td>67</td><td>0.0119402</td><td>91</td><td>0.0277081</td></tr><tr class="text"><td>20</td><td>0.00128008</td><td>44</td><td>0.0382672</td><td>68</td><td>0.0332631</td><td>92</td><td>0.00373254</td></tr><tr class="text"><td>21</td><td>0.0288953</td><td>45</td><td>0.0102288</td><td>69</td><td>0.0083426</td><td>93</td><td>0.0225776</td></tr><tr class="text"><td>22</td><td>0.00111944</td><td>46</td><td>0.0338425</td><td>70</td><td>0.0269992</td><td> </td><td> </td></tr><tr class="text"><td>23</td><td>0.00116532</td><td>47</td><td>0.00253559</td><td>71</td><td>0.00373254</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-420.57</td></tr>
</table>

|mrof_output=
<align id="cer2_3" folder="mrof"></align>

|sequence_logo=
[[Image:Logo_cer2_3.png|500px|center]]

|hmms=
<pre>
>AP_cer2-3 profile HMM generated consensus sequence
vDtGAnitvaskdlLKGLGdndqAvGlGGdmvvrFkiGvHFttGrCmPeieYqFiiGnD
lLskLiFvFdY
</pre>

|pairwise_alignment=
<pre>
Domain 1 of 1, from 1 to 70: score 36.0, E = 1.5e-11

DTG_ILG template ->vDTGAsvlsviskecklaqklgltrkkafdpSSYvCivtllsysqPs
vDTGA++ +v+sk+ ++k gl ++
AP_cer2-3 1 VDTGANI-TVASKD---LLK-GL----------------------GD 20

sktsttaqdtirgagGqskiyvSklktsgqirknllslvtikitkGnvTe
+++ + g gG++++ ++++ v++ + G
AP_cer2-3 21 NDQA------V-GLGGDMVV-----RFKIG--------VHFTT--G---- 44

venrslpsdgvflvvtdpedqksrydvILGrldfLrqlnsvhidl<-
+ + ++ e y+ I+G+ d+L++l +v +d+
AP_cer2-3 45 -------R---C-MP-EIE-----YQFIIGN-DLLSKLIFV-FDY 70
</pre>
}}

Name Father Distance to father Sons