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CAARD:Chrofung - Revision history
2026-06-09T14:58:36Z
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imported>Gydbwiki: New page: {{CAARD |pin_output= (AfRTL-1:0.451026,((Sushi-ichi:0.424181,FLJ38865:0.498614)N3:0.104446,(((Real:0.097092,Pyggy:0.157758)N6:0.599071, (MGLR3:0.677039,Grasshoppe:0.705748)N7:0.121776)N5:0...
2009-05-08T14:25:49Z
<p>New page: {{CAARD |pin_output= (AfRTL-1:0.451026,((Sushi-ichi:0.424181,FLJ38865:0.498614)N3:0.104446,(((Real:0.097092,Pyggy:0.157758)N6:0.599071, (MGLR3:0.677039,Grasshoppe:0.705748)N7:0.121776)N5:0...</p>
<p><b>New page</b></p><div>{{CAARD<br />
|pin_output=<br />
(AfRTL-1:0.451026,((Sushi-ichi:0.424181,FLJ38865:0.498614)N3:0.104446,(((Real:0.097092,Pyggy:0.157758)N6:0.599071, (MGLR3:0.677039,Grasshoppe:0.705748)N7:0.121776)N5:0.228167,(marY1:0.445998,(Dane-1:0.299148,Maggy:0.372394)N9:0.219832) N8:0.120816)N4:0.062005)N2:0.052318,(Cft-1:0.438641,(Skippy:0.481008,(Cgret:0.271134,Pyret:0.415548)N12:0.159519) N11:0.120020)N10:0.022517); <br />
<br />
|fin_output=<br />
<table class="tabdata"><br />
<tr class="grey"><br />
<td>Name</td><br />
<td>Father</td><br />
<td>Distance to father</td><br />
<td>Sons</td><br />
</tr> <br />
<tr><td>AfRTL-1</td><td>N1</td><td>0.451026</td><td>-</td></tr><tr><td>Sushi-ichi</td><td>N3</td><td>0.424181</td><td>-</td></tr><tr><td>FLJ38865</td><td>N3</td><td>0.498614</td><td>-</td></tr><tr><td>Real</td><td>N6</td><td>0.0970923</td><td>-</td></tr><tr><td>Pyggy</td><td>N6</td><td>0.157758</td><td>-</td></tr><tr><td>MGLR3</td><td>N7</td><td>0.677039</td><td>-</td></tr><tr><td>Grasshopper</td><td>N7</td><td>0.705748</td><td>-</td></tr><tr><td>marY1</td><td>N8</td><td>0.445998</td><td>-</td></tr><tr><td>Dane-1</td><td>N9</td><td>0.299148</td><td>-</td></tr><tr><td>Maggy</td><td>N9</td><td>0.372394</td><td>-</td></tr><tr><td>Cft-1</td><td>N10</td><td>0.438641</td><td>-</td></tr><tr><td>Skippy</td><td>N11</td><td>0.481008</td><td>-</td></tr><tr><td>Cgret</td><td>N12</td><td>0.271134</td><td>-</td></tr><tr><td>Pyret</td><td>N12</td><td>0.415548</td><td>-</td></tr><tr><td>N1</td><td>root!</td><td>-</td><td>AfRTL-1 N2 N10</td></tr><tr><td>N2</td><td>N1</td><td>0.0523177</td><td>N3 N4</td></tr><tr><td>N3</td><td>N2</td><td>0.104446</td><td>Sushi-ichi FLJ38865</td></tr><tr><td>N4</td><td>N2</td><td>0.0620054</td><td>N5 N8</td></tr><tr><td>N5</td><td>N4</td><td>0.228167</td><td>N6 N7</td></tr><tr><td>N6</td><td>N5</td><td>0.599071</td><td>Real Pyggy</td></tr><tr><td>N7</td><td>N5</td><td>0.121776</td><td>MGLR3 Grasshopper</td></tr><tr><td>N8</td><td>N4</td><td>0.120816</td><td>marY1 N9</td></tr><tr><td>N9</td><td>N8</td><td>0.219832</td><td>Dane-1 Maggy</td></tr><tr><td>N10</td><td>N1</td><td>0.0225166</td><td>Cft-1 N11</td></tr><tr><td>N11</td><td>N10</td><td>0.12002</td><td>Skippy N12</td></tr><tr><td>N12</td><td>N11</td><td>0.159519</td><td>Cgret Pyret</td></tr><br />
</table><br />
<br />
<br />
|jpf_output=<br />
<table class="tabdata"><br />
<tr class="grey"><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
</tr><br />
<tr class="text"><td>0</td><td>6.96521e-012</td><td>29</td><td>5.63431e-006</td><td>58</td><td>1.11242e-014</td><td>87</td><td>8.48126e-013</td></tr><tr class="text"><td>1</td><td>2.99163e-005</td><td>30</td><td>5.8997e-020</td><td>59</td><td>7.91262e-011</td><td>88</td><td>9.00218e-016</td></tr><tr class="text"><td>2</td><td>6.4363e-013</td><td>31</td><td>6.86135e-017</td><td>60</td><td>6.50687e-016</td><td>89</td><td>3.88161e-006</td></tr><tr class="text"><td>3</td><td>0.000611746</td><td>32</td><td>8.2396e-017</td><td>61</td><td>6.03764e-013</td><td>90</td><td>2.69027e-011</td></tr><tr class="text"><td>4</td><td>5.37956e-011</td><td>33</td><td>1.47077e-017</td><td>62</td><td>2.40961e-005</td><td>91</td><td>2.57814e-014</td></tr><tr class="text"><td>5</td><td>1.10803e-018</td><td>34</td><td>6.0759e-016</td><td>63</td><td>3.27651e-011</td><td>92</td><td>3.03955e-018</td></tr><tr class="text"><td>6</td><td>4.54225e-015</td><td>35</td><td>1.7766e-015</td><td>64</td><td>6.45036e-020</td><td>93</td><td>2.22102e-013</td></tr><tr class="text"><td>7</td><td>0.00673448</td><td>36</td><td>1.48712e-005</td><td>65</td><td>1.04379e-012</td><td>94</td><td>0.000597088</td></tr><tr class="text"><td>8</td><td>3.37886e-013</td><td>37</td><td>0.00142982</td><td>66</td><td>2.44491e-009</td><td>95</td><td>1.19173e-019</td></tr><tr class="text"><td>9</td><td>3.25244e-009</td><td>38</td><td>3.47026e-007</td><td>67</td><td>0.00435159</td><td>96</td><td>7.43072e-019</td></tr><tr class="text"><td>10</td><td>1.32022e-015</td><td>39</td><td>0.021522</td><td>68</td><td>2.91675e-013</td><td>97</td><td>6.81437e-017</td></tr><tr class="text"><td>11</td><td>2.62427e-013</td><td>40</td><td>0.00549305</td><td>69</td><td>2.00401e-016</td><td>98</td><td>5.41389e-014</td></tr><tr class="text"><td>12</td><td>0.000125576</td><td>41</td><td>0.00558476</td><td>70</td><td>3.16546e-005</td><td>99</td><td>3.29835e-013</td></tr><tr class="text"><td>13</td><td>2.44626e-015</td><td>42</td><td>0.00306596</td><td>71</td><td>9.93053e-015</td><td>100</td><td>5.20568e-011</td></tr><tr class="text"><td>14</td><td>4.21066e-018</td><td>43</td><td>1.67069e-017</td><td>72</td><td>2.56874e-019</td><td>101</td><td>3.97884e-006</td></tr><tr class="text"><td>15</td><td>4.91987e-019</td><td>44</td><td>5.36748e-019</td><td>73</td><td>0.000123741</td><td>102</td><td>0.000611746</td></tr><tr class="text"><td>16</td><td>0.00480454</td><td>45</td><td>2.61699e-013</td><td>74</td><td>1.21277e-018</td><td>103</td><td>1.22286e-018</td></tr><tr class="text"><td>17</td><td>2.09723e-011</td><td>46</td><td>0.00436893</td><td>75</td><td>2.43079e-021</td><td>104</td><td>4.40025e-010</td></tr><tr class="text"><td>18</td><td>4.57539e-017</td><td>47</td><td>1.10687e-017</td><td>76</td><td>1.20693e-018</td><td>105</td><td>2.09631e-005</td></tr><tr class="text"><td>19</td><td>7.17581e-013</td><td>48</td><td>2.39271e-018</td><td>77</td><td>1.57929e-011</td><td>106</td><td>1.92092e-006</td></tr><tr class="text"><td>20</td><td>1.46761e-021</td><td>49</td><td>9.40023e-014</td><td>78</td><td>7.66126e-010</td><td>107</td><td>1.95152e-018</td></tr><tr class="text"><td>21</td><td>3.82028e-010</td><td>50</td><td>3.83206e-010</td><td>79</td><td>7.743e-011</td><td>108</td><td>1.17129e-018</td></tr><tr class="text"><td>22</td><td>0.00412729</td><td>51</td><td>6.50424e-006</td><td>80</td><td>1.60286e-009</td><td>109</td><td>1.75118e-013</td></tr><tr class="text"><td>23</td><td>1.36299e-011</td><td>52</td><td>7.43899e-014</td><td>81</td><td>2.49756e-009</td><td>110</td><td>3.68142e-012</td></tr><tr class="text"><td>24</td><td>1.55643e-007</td><td>53</td><td>7.00419e-019</td><td>82</td><td>1.31633e-014</td><td>111</td><td>3.07423e-009</td></tr><tr class="text"><td>25</td><td>2.81773e-019</td><td>54</td><td>2.32332e-015</td><td>83</td><td>8.6209e-013</td><td>112</td><td>4.51984e-019</td></tr><tr class="text"><td>26</td><td>9.04411e-005</td><td>55</td><td>0.000107921</td><td>84</td><td>3.37746e-018</td><td>113</td><td>6.92431e-010</td></tr><tr class="text"><td>27</td><td>0.000139721</td><td>56</td><td>0.0054601</td><td>85</td><td>7.05266e-015</td><td>114</td><td>7.1995e-013</td></tr><tr class="text"><td>28</td><td>1.14347e-006</td><td>57</td><td>9.32844e-009</td><td>86</td><td>2.84114e-010</td><td>115</td><td>7.73632e-01</td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-2984.13</td></tr><br />
</table> <br />
<br />
|jrof_output=<br />
<align id="chrofung" folder="jrof"></align><br />
<br />
<br />
|mpf_output=<br />
<table class="tabdata"><br />
<tr class="grey"><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
</tr><br />
<tr class="text"><td>0</td><td>3.21334e-011</td><td>29</td><td>2.50382e-005</td><td>58</td><td>5.99881e-014</td><td>87</td><td>2.43806e-012</td></tr><tr class="text"><td>1</td><td>3.04932e-005</td><td>30</td><td>2.70898e-018</td><td>59</td><td>4.05537e-010</td><td>88</td><td>4.56042e-015</td></tr><tr class="text"><td>2</td><td>1.11564e-012</td><td>31</td><td>1.40119e-016</td><td>60</td><td>2.80234e-014</td><td>89</td><td>7.17312e-006</td></tr><tr class="text"><td>3</td><td>0.000612571</td><td>32</td><td>4.42008e-016</td><td>61</td><td>4.22258e-012</td><td>90</td><td>1.1543e-010</td></tr><tr class="text"><td>4</td><td>9.35929e-011</td><td>33</td><td>4.43102e-016</td><td>62</td><td>0.000875037</td><td>91</td><td>2.39245e-013</td></tr><tr class="text"><td>5</td><td>3.59806e-018</td><td>34</td><td>1.5729e-015</td><td>63</td><td>9.05764e-011</td><td>92</td><td>5.19499e-017</td></tr><tr class="text"><td>6</td><td>1.00491e-014</td><td>35</td><td>6.53542e-014</td><td>64</td><td>5.51501e-019</td><td>93</td><td>1.02354e-012</td></tr><tr class="text"><td>7</td><td>0.0334023</td><td>36</td><td>0.000379783</td><td>65</td><td>1.26682e-012</td><td>94</td><td>0.00112001</td></tr><tr class="text"><td>8</td><td>1.1717e-011</td><td>37</td><td>0.022944</td><td>66</td><td>7.41494e-009</td><td>95</td><td>2.24702e-018</td></tr><tr class="text"><td>9</td><td>4.50297e-009</td><td>38</td><td>3.52636e-007</td><td>67</td><td>0.0270901</td><td>96</td><td>1.20699e-017</td></tr><tr class="text"><td>10</td><td>8.89342e-015</td><td>39</td><td>0.091904</td><td>68</td><td>2.28252e-012</td><td>97</td><td>1.7334e-016</td></tr><tr class="text"><td>11</td><td>1.3543e-012</td><td>40</td><td>0.051544</td><td>69</td><td>3.79163e-015</td><td>98</td><td>2.05481e-013</td></tr><tr class="text"><td>12</td><td>0.00280765</td><td>41</td><td>0.051691</td><td>70</td><td>0.000839536</td><td>99</td><td>2.70759e-012</td></tr><tr class="text"><td>13</td><td>4.30616e-014</td><td>42</td><td>0.068765</td><td>71</td><td>1.19545e-014</td><td>100</td><td>3.01772e-010</td></tr><tr class="text"><td>14</td><td>2.57082e-016</td><td>43</td><td>2.76551e-016</td><td>72</td><td>1.59289e-018</td><td>101</td><td>4.21757e-006</td></tr><tr class="text"><td>15</td><td>6.52936e-017</td><td>44</td><td>7.44151e-018</td><td>73</td><td>0.00280235</td><td>102</td><td>0.000612571</td></tr><tr class="text"><td>16</td><td>0.019803</td><td>45</td><td>2.29027e-012</td><td>74</td><td>1.0414e-017</td><td>103</td><td>3.24146e-018</td></tr><tr class="text"><td>17</td><td>2.76313e-011</td><td>46</td><td>0.0393812</td><td>75</td><td>1.26663e-019</td><td>104</td><td>4.62672e-010</td></tr><tr class="text"><td>18</td><td>7.1694e-016</td><td>47</td><td>1.59461e-016</td><td>76</td><td>1.85088e-017</td><td>105</td><td>2.09876e-005</td></tr><tr class="text"><td>19</td><td>1.35016e-011</td><td>48</td><td>9.36587e-017</td><td>77</td><td>1.58403e-010</td><td>106</td><td>3.42887e-006</td></tr><tr class="text"><td>20</td><td>2.00756e-020</td><td>49</td><td>1.51029e-013</td><td>78</td><td>1.04432e-009</td><td>107</td><td>1.65337e-017</td></tr><tr class="text"><td>21</td><td>1.15196e-009</td><td>50</td><td>6.86563e-010</td><td>79</td><td>4.52779e-009</td><td>108</td><td>1.98214e-017</td></tr><tr class="text"><td>22</td><td>0.040752</td><td>51</td><td>6.5828e-006</td><td>80</td><td>4.39152e-009</td><td>109</td><td>9.71044e-013</td></tr><tr class="text"><td>23</td><td>2.90444e-011</td><td>52</td><td>1.16809e-012</td><td>81</td><td>3.70147e-008</td><td>110</td><td>2.16171e-011</td></tr><tr class="text"><td>24</td><td>6.54566e-007</td><td>53</td><td>1.09488e-017</td><td>82</td><td>5.28768e-014</td><td>111</td><td>7.76067e-009</td></tr><tr class="text"><td>25</td><td>3.16029e-018</td><td>54</td><td>2.16029e-014</td><td>83</td><td>1.02232e-012</td><td>112</td><td>7.51187e-018</td></tr><tr class="text"><td>26</td><td>0.000668521</td><td>55</td><td>0.000344082</td><td>84</td><td>2.93773e-017</td><td>113</td><td>1.30337e-009</td></tr><tr class="text"><td>27</td><td>0.00144386</td><td>56</td><td>0.0146818</td><td>85</td><td>5.47914e-014</td><td>114</td><td>2.16043e-012</td></tr><tr class="text"><td>28</td><td>1.38961e-005</td><td>57</td><td>3.20944e-008</td><td>86</td><td>8.22979e-009</td><td>115</td><td>3.01082e-012</td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-2770.17</td></tr><br />
</table><br />
<br />
<br />
|mrof_output=<br />
<align id="chrofung" folder="mrof"></align><br />
<br />
|sequence_logo=<br />
[[Image:Logo_chrofung.png|500px|center]]<br />
<br />
|hmms=<br />
<pre><br />
>AP_chrofung profile HMM generated consensus sequence<br />
iDSGAdgnfidprvVnkrRlplplkkePlqlegvDGrklEsGkItretapltlrihGnH<br />
ieetafdFvidlarydiiLGmPWLekhnPtidw<br />
</pre><br />
<br />
|pairwise_alignment=<br />
<pre><br />
Domain 1 of 1, from 1 to 92: score 60.0, E = 8.9e-19<br />
<br />
DTG_ILG template *->vDTGAsvlsviskecklaqklgltrkkafdpSSYvCivtllsysqPs<br />
+D+GA+ ++i +++++ +l+l P+<br />
AP_chrofun 1 IDSGADG-NFIDPRVVNKRRLPL----------------------PL 24 <br />
<br />
sktsttaqdtirgagGqskiyvSklktsgqirkn..llslvtikitkGnv<br />
+k + + g++G+ k sg+i +++ + +t++i+ G <br />
AP_chrofun 25 KKEPLQ----LEGVDGR-KL------ESGKITREtaP---LTLRIH-G-- 57 <br />
<br />
TevenrslpsdgvflvvtdpedqksrydvILGrldfLrqlnsvhidl<-*<br />
n+ + + f v+d+ + yd+ILG+ ++L+++n+ id+ <br />
AP_chrofun 58 ----NHIEETA--FDFVIDLAR----YDIILGM-PWLEKHNPT-IDW 92<br />
</pre><br />
}}</div>
imported>Gydbwiki