imported>Gydbwiki: New page: {{CAARD |pin_output= (DDIDan:0.026204,((DDIan:0.117206,(DDIDro:0.181222,((DDISpom:0.233917,(DDIAni:0.148890,(DDINcra:0.091024, (DDIMgri:0.104529,DDIGzea:0.090694)N9:0.012646)N8:0.030717)N7...

2009-05-08T10:05:10Z

New page: {{CAARD |pin_output= (DDIDan:0.026204,((DDIan:0.117206,(DDIDro:0.181222,((DDISpom:0.233917,(DDIAni:0.148890,(DDINcra:0.091024, (DDIMgri:0.104529,DDIGzea:0.090694)N9:0.012646)N8:0.030717)N7...

New page

{{CAARD
|pin_output=
(DDIDan:0.026204,((DDIan:0.117206,(DDIDro:0.181222,((DDISpom:0.233917,(DDIAni:0.148890,(DDINcra:0.091024, (DDIMgri:0.104529,DDIGzea:0.090694)N9:0.012646)N8:0.030717)N7:0.041310)N6:0.094340,((DDIAra:0.320097, ((DDIPfal:0.088877,DDIPyoe:0.059366)N13:0.215828,(DDIGlam:0.533159,DDICbri:0.712107)N14:0.201558) N12:0.054686)N11:0.048063,(DDILei:0.365656,DDICer:0.477282)N15:0.020486)N10:0.044999)N5:0.076632)N4:0.040885) N3:0.082283,(DDIMfas:0.016030,DDIMmus:0.043488)N16:0.030473)N2:0.014211,(DDIXen:0.029894, (DDIHum:0.003281,DDIRnor:0.047049)N18:0.010875)N17:0.006074);

|fin_output=
<table class="tabdata">
<tr class="grey">
<td>Name</td>
<td>Father</td>
<td>Distance to father</td>
<td>Sons</td>
<tr>
<tr><td>DDIDan</td><td>N1</td><td>0.0262037</td><td>-</td></tr><tr><td>DDIan</td><td>N3</td><td>0.117206</td><td>-</td></tr><tr><td>DDIDro</td><td>N4</td><td>0.181222</td><td>-</td></tr><tr><td>DDISpom</td><td>N6</td><td>0.233917</td><td>-</td></tr><tr><td>DDIAni</td><td>N7</td><td>0.14889</td><td>-</td></tr><tr><td>DDINcra</td><td>N8</td><td>0.0910241</td><td>-</td></tr><tr><td>DDIMgri</td><td>N9</td><td>0.104529</td><td>-</td></tr><tr><td>DDIGzea</td><td>N9</td><td>0.090694</td><td>-</td></tr><tr><td>DDIAra</td><td>N11</td><td>0.320097</td><td>-</td></tr><tr><td>DDIPfal</td><td>N13</td><td>0.0888766</td><td>-</td></tr><tr><td>DDIPyoe</td><td>N13</td><td>0.0593656</td><td>-</td></tr><tr><td>DDIGlam</td><td>N14</td><td>0.533159</td><td>-</td></tr><tr><td>DDICbri</td><td>N14</td><td>0.712107</td><td>-</td></tr><tr><td>DDILei</td><td>N15</td><td>0.365656</td><td>-</td></tr><tr><td>DDICer</td><td>N15</td><td>0.477282</td><td>-</td></tr><tr><td>DDIMfas</td><td>N16</td><td>0.0160301</td><td>-</td></tr><tr><td>DDIMmus</td><td>N16</td><td>0.0434883</td><td>-</td></tr><tr><td>DDIXen</td><td>N17</td><td>0.0298944</td><td>-</td></tr><tr><td>DDIHum</td><td>N18</td><td>0.00328061</td><td>-</td></tr><tr><td>DDIRnor</td><td>N18</td><td>0.047049</td><td>-</td></tr><tr><td>N1</td><td>root!</td><td>-</td><td>DDIDan N2 N17</td></tr><tr><td>N2</td><td>N1</td><td>0.0142114</td><td>N3 N16</td></tr><tr><td>N3</td><td>N2</td><td>0.0822829</td><td>DDIan N4</td></tr><tr><td>N4</td><td>N3</td><td>0.0408853</td><td>DDIDro N5</td></tr><tr><td>N5</td><td>N4</td><td>0.0766323</td><td>N6 N10</td></tr><tr><td>N6</td><td>N5</td><td>0.0943402</td><td>DDISpom N7</td></tr><tr><td>N7</td><td>N6</td><td>0.0413101</td><td>DDIAni N8</td></tr><tr><td>N8</td><td>N7</td><td>0.0307174</td><td>DDINcra N9</td></tr><tr><td>N9</td><td>N8</td><td>0.0126463</td><td>DDIMgri DDIGzea</td></tr><tr><td>N10</td><td>N5</td><td>0.0449989</td><td>N11 N15</td></tr><tr><td>N11</td><td>N10</td><td>0.0480625</td><td>DDIAra N12</td></tr><tr><td>N12</td><td>N11</td><td>0.0546856</td><td>N13 N14</td></tr><tr><td>N13</td><td>N12</td><td>0.215828</td><td>DDIPfal DDIPyoe</td></tr><tr><td>N14</td><td>N12</td><td>0.201558</td><td>DDIGlam DDICbri</td></tr><tr><td>N15</td><td>N10</td><td>0.0204861</td><td>DDILei DDICer</td></tr><tr><td>N16</td><td>N2</td><td>0.0304732</td><td>DDIMfas DDIMmus</td></tr><tr><td>N17</td><td>N1</td><td>0.00607407</td><td>DDIXen N18</td></tr><tr><td>N18</td><td>N17</td><td>0.0108746</td><td>DDIHum DDIRnor</td></tr>
</table>

|jpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<tr>
<tr class="text"><td>0</td><td>1.04031e-006</td><td>28</td><td>2.07278e-023</td><td>56</td><td>3.68473e-015</td><td>84</td><td>9.30677e-009</td></tr><tr class="text"><td>1</td><td>0.000458062</td><td>29</td><td>6.36391e-006</td><td>57</td><td>8.41987e-014</td><td>85</td><td>4.35605e-009</td></tr><tr class="text"><td>2</td><td>6.4317e-006</td><td>30</td><td>8.78508e-015</td><td>58</td><td>1.92041e-010</td><td>86</td><td>2.29823e-012</td></tr><tr class="text"><td>3</td><td>0.00362093</td><td>31</td><td>0.000266644</td><td>59</td><td>5.87121e-016</td><td>87</td><td>2.42343e-022</td></tr><tr class="text"><td>4</td><td>0.000266644</td><td>32</td><td>2.61792e-014</td><td>60</td><td>3.59782e-013</td><td>88</td><td>8.1399e-005</td></tr><tr class="text"><td>5</td><td>3.77022e-005</td><td>33</td><td>0.00362093</td><td>61</td><td>1.87245e-012</td><td>89</td><td>4.75546e-005</td></tr><tr class="text"><td>6</td><td>8.74591e-021</td><td>34</td><td>2.60946e-005</td><td>62</td><td>1.71923e-005</td><td>90</td><td>2.80043e-006</td></tr><tr class="text"><td>7</td><td>1.42078e-007</td><td>35</td><td>0.00362093</td><td>63</td><td>4.77374e-014</td><td>91</td><td>2.77581e-018</td></tr><tr class="text"><td>8</td><td>1.56597e-005</td><td>36</td><td>1.00043e-015</td><td>64</td><td>1.22011e-006</td><td>92</td><td>6.87648e-020</td></tr><tr class="text"><td>9</td><td>1.10588e-009</td><td>37</td><td>3.74522e-014</td><td>65</td><td>1.72592e-012</td><td>93</td><td>1.41052e-011</td></tr><tr class="text"><td>10</td><td>1.91651e-006</td><td>38</td><td>1.04105e-022</td><td>66</td><td>1.85957e-009</td><td>94</td><td>1.23053e-013</td></tr><tr class="text"><td>11</td><td>4.02458e-017</td><td>39</td><td>0.000821568</td><td>67</td><td>0.0129119</td><td>95</td><td>1.06902e-015</td></tr><tr class="text"><td>12</td><td>1.14558e-021</td><td>40</td><td>1.39619e-005</td><td>68</td><td>4.40964e-019</td><td>96</td><td>5.59582e-020</td></tr><tr class="text"><td>13</td><td>5.01139e-014</td><td>41</td><td>1.88882e-016</td><td>69</td><td>5.44922e-015</td><td>97</td><td>1.61738e-018</td></tr><tr class="text"><td>14</td><td>0.000266644</td><td>42</td><td>0.00362093</td><td>70</td><td>2.34288e-021</td><td>98</td><td>4.3444e-013</td></tr><tr class="text"><td>15</td><td>2.54724e-010</td><td>43</td><td>1.31613e-008</td><td>71</td><td>2.69674e-011</td><td>99</td><td>0.000358463</td></tr><tr class="text"><td>16</td><td>1.74031e-009</td><td>44</td><td>5.87569e-007</td><td>72</td><td>2.54187e-008</td><td>100</td><td>0.00818293</td></tr><tr class="text"><td>17</td><td>0.00138895</td><td>45</td><td>7.05116e-006</td><td>73</td><td>7.12699e-017</td><td>101</td><td>2.63019e-013</td></tr><tr class="text"><td>18</td><td>1.21429e-014</td><td>46</td><td>2.63437e-016</td><td>74</td><td>0.0298287</td><td>102</td><td>3.82912e-017</td></tr><tr class="text"><td>19</td><td>1.91153e-010</td><td>47</td><td>2.68575e-013</td><td>75</td><td>4.41244e-007</td><td>103</td><td>1.18318e-021</td></tr><tr class="text"><td>20</td><td>2.23125e-015</td><td>48</td><td>1.57197e-017</td><td>76</td><td>7.64903e-010</td><td>104</td><td>5.56663e-024</td></tr><tr class="text"><td>21</td><td>3.22196e-008</td><td>49</td><td>1.47113e-012</td><td>77</td><td>0.00362093</td><td>105</td><td>2.33609e-013</td></tr><tr class="text"><td>22</td><td>3.97195e-007</td><td>50</td><td>2.94586e-008</td><td>78</td><td>2.3715e-007</td><td>106</td><td>8.87572e-022</td></tr><tr class="text"><td>23</td><td>5.30055e-011</td><td>51</td><td>8.07382e-009</td><td>79</td><td>4.32347e-007</td><td>107</td><td>1.98135e-008</td></tr><tr class="text"><td>24</td><td>0.000458062</td><td>52</td><td>0.000282579</td><td>80</td><td>4.50659e-011</td><td>108</td><td>5.63882e-008</td></tr><tr class="text"><td>25</td><td>8.06579e-020</td><td>53</td><td>1.00739e-010</td><td>81</td><td>0.00429733</td><td>109</td><td>6.04427e-017</td></tr><tr class="text"><td>26</td><td>0.000472789</td><td>54</td><td>2.78009e-012</td><td>82</td><td>5.37664e-012</td><td> </td><td> </td></tr><tr class="text"><td>27</td><td>5.69615e-016</td><td>55</td><td>0.0148872</td><td>83</td><td>4.60951e-009</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-2581.74</td></tr>
</table>

|jrof_output=
<align id="mag" folder="jrof"></align>

|mpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<tr>
<tr class="text"><td>0</td><td>1.26812e-006</td><td>28</td><td>1.13383e-022</td><td>56</td><td>2.32768e-014</td><td>84</td><td>1.57364e-008</td></tr><tr class="text"><td>1</td><td>0.00046189</td><td>29</td><td>6.47861e-006</td><td>57</td><td>1.29608e-013</td><td>85</td><td>8.1792e-009</td></tr><tr class="text"><td>2</td><td>1.08606e-005</td><td>30</td><td>3.93978e-014</td><td>58</td><td>1.09949e-009</td><td>86</td><td>4.92287e-012</td></tr><tr class="text"><td>3</td><td>0.00362329</td><td>31</td><td>0.000268874</td><td>59</td><td>8.92643e-016</td><td>87</td><td>6.45839e-022</td></tr><tr class="text"><td>4</td><td>0.000268874</td><td>32</td><td>8.39643e-014</td><td>60</td><td>5.65055e-013</td><td>88</td><td>8.87457e-005</td></tr><tr class="text"><td>5</td><td>3.9447e-005</td><td>33</td><td>0.00362329</td><td>61</td><td>3.14878e-012</td><td>89</td><td>4.81426e-005</td></tr><tr class="text"><td>6</td><td>7.18311e-020</td><td>34</td><td>5.28422e-005</td><td>62</td><td>1.90804e-005</td><td>90</td><td>3.0513e-006</td></tr><tr class="text"><td>7</td><td>2.44681e-007</td><td>35</td><td>0.00362329</td><td>63</td><td>8.00699e-014</td><td>91</td><td>6.92704e-018</td></tr><tr class="text"><td>8</td><td>1.69084e-005</td><td>36</td><td>2.80447e-015</td><td>64</td><td>1.42404e-006</td><td>92</td><td>1.41283e-019</td></tr><tr class="text"><td>9</td><td>2.57643e-009</td><td>37</td><td>1.70641e-013</td><td>65</td><td>8.43459e-012</td><td>93</td><td>1.72979e-011</td></tr><tr class="text"><td>10</td><td>2.08475e-006</td><td>38</td><td>3.53471e-021</td><td>66</td><td>2.2871e-009</td><td>94</td><td>9.09753e-013</td></tr><tr class="text"><td>11</td><td>1.96616e-016</td><td>39</td><td>0.00403993</td><td>67</td><td>0.06183</td><td>95</td><td>5.20779e-015</td></tr><tr class="text"><td>12</td><td>2.19181e-020</td><td>40</td><td>1.54558e-005</td><td>68</td><td>2.74916e-018</td><td>96</td><td>4.09834e-019</td></tr><tr class="text"><td>13</td><td>1.17508e-013</td><td>41</td><td>2.73233e-016</td><td>69</td><td>5.53363e-014</td><td>97</td><td>3.11343e-018</td></tr><tr class="text"><td>14</td><td>0.000268874</td><td>42</td><td>0.00362329</td><td>70</td><td>3.43617e-020</td><td>98</td><td>4.48636e-012</td></tr><tr class="text"><td>15</td><td>2.75739e-010</td><td>43</td><td>2.21116e-008</td><td>71</td><td>1.02153e-010</td><td>99</td><td>0.000547417</td></tr><tr class="text"><td>16</td><td>3.27989e-009</td><td>44</td><td>7.10929e-007</td><td>72</td><td>5.58255e-008</td><td>100</td><td>0.0248586</td></tr><tr class="text"><td>17</td><td>0.001389</td><td>45</td><td>7.14359e-006</td><td>73</td><td>8.93829e-016</td><td>101</td><td>2.41183e-012</td></tr><tr class="text"><td>18</td><td>1.39477e-014</td><td>46</td><td>8.81337e-016</td><td>74</td><td>0.091904</td><td>102</td><td>1.23533e-016</td></tr><tr class="text"><td>19</td><td>5.67625e-010</td><td>47</td><td>1.04119e-012</td><td>75</td><td>5.68261e-007</td><td>103</td><td>5.0654e-021</td></tr><tr class="text"><td>20</td><td>3.94517e-015</td><td>48</td><td>8.13928e-017</td><td>76</td><td>3.013e-009</td><td>104</td><td>8.89264e-024</td></tr><tr class="text"><td>21</td><td>6.78794e-008</td><td>49</td><td>2.90448e-012</td><td>77</td><td>0.00362329</td><td>105</td><td>5.03653e-013</td></tr><tr class="text"><td>22</td><td>1.30172e-006</td><td>50</td><td>3.11211e-008</td><td>78</td><td>4.16717e-007</td><td>106</td><td>6.5902e-021</td></tr><tr class="text"><td>23</td><td>1.1207e-010</td><td>51</td><td>1.57966e-008</td><td>79</td><td>4.63536e-007</td><td>107</td><td>4.42726e-008</td></tr><tr class="text"><td>24</td><td>0.00046189</td><td>52</td><td>0.000999038</td><td>80</td><td>1.23649e-010</td><td>108</td><td>9.17878e-008</td></tr><tr class="text"><td>25</td><td>1.40591e-019</td><td>53</td><td>1.10097e-010</td><td>81</td><td>0.00430733</td><td>109</td><td>2.92644e-016</td></tr><tr class="text"><td>26</td><td>0.000475125</td><td>54</td><td>6.5623e-012</td><td>82</td><td>1.01129e-011</td><td> </td><td> </td></tr><tr class="text"><td>27</td><td>6.50203e-016</td><td>55</td><td>0.06183</td><td>83</td><td>9.90154e-009</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-2490.02</td></tr>
</table>

|mrof_output=
<align id="mag" folder="mrof"></align>

|sequence_logo=
[[Image:Logo_ddi.png|500px|center]]

|hmms=
<pre>
>AP_ddi profile HMM generated consensus sequence
VDSGAQatImSkacAErCGimRLvDtRfqGiAkGVGtqkIlGrIHlaqikiGdFLpcsF
tVlEdqpmDlLLGLDmLkrHQccIDLkknllitgeetpFLp
</pre>

|pairwise_alignment=
<pre>
Domain 1 of 1, from 1 to 85: score 59.2, E = 1.5e-18

DTG_ILG template *->vDTGAsvlsviskecklaqklgltrkkafdpSSYvCivtllsysqPs
vD+GA+ +++sk c a+++g + ++ +
AP_ddi 1 VDSGAQA-TIMSKAC--AERCGIM-------------------RLVD 25

sktsttaqdtirgagGqskiyvSklktsgqirknllslvtikitkGnvTe
+ ++ +a+G + k++g+i+ l iki G
AP_ddi 26 T-RF------QGIAKGVGTQ-----KILGRIH-----LAQIKI--G---- 52

venrslpsdgvflvv.tdpedqksrydvILGrldfLrqlnsvhidl<-*
lp++ f v++++p +d++LG+ d+L+ ++++ idl
AP_ddi 53 ---DFLPCS--FTVLeDQP------MDLLLGL-DMLKRHQCC-IDL 85
</pre>
}}

CAARD:DDI - Revision history

imported>Gydbwiki: New page: {{CAARD |pin_output= (DDIDan:0.026204,((DDIan:0.117206,(DDIDro:0.181222,((DDISpom:0.233917,(DDIAni:0.148890,(DDINcra:0.091024, (DDIMgri:0.104529,DDIGzea:0.090694)N9:0.012646)N8:0.030717)N7...