CAARD:Del - Revision history

imported>Gydbwiki: New page: {{CAARD |pin_output= (Retrosat-2:0.508055,(Del:0.418355,Peabody:0.549836)N2:0.130960,(Tma:0.402571,(Legolas:0.242758,T32022.14:0.203860)N4:0.161988)N3:0.114301); |fin_output=
2009-05-08T14:19:32Z

New page: {{CAARD |pin_output= (Retrosat-2:0.508055,(Del:0.418355,Peabody:0.549836)N2:0.130960,(Tma:0.402571,(Legolas:0.242758,T32022.14:0.203860)N4:0.161988)N3:0.114301); |fin_output= <tab...

New page
{{CAARD
|pin_output=
(Retrosat-2:0.508055,(Del:0.418355,Peabody:0.549836)N2:0.130960,(Tma:0.402571,(Legolas:0.242758,T32022.14:0.203860)N4:0.161988)N3:0.114301);

|fin_output=
<table class="tabdata">
<tr class="grey">
<td>Name</td>
<td>Father</td>
<td>Distance to father</td>
<td>Sons</td>
</tr>
<tr><td>Retrosat-2</td><td>N1</td><td>0.508055</td><td>-</td></tr><tr><td>Del</td><td>N2</td><td>0.418355</td><td>-</td></tr><tr><td>Peabody</td><td>N2</td><td>0.549836</td><td>-</td></tr><tr><td>Tma</td><td>N3</td><td>0.402571</td><td>-</td></tr><tr><td>Legolas</td><td>N4</td><td>0.242758</td><td>-</td></tr><tr><td>T32022.14</td><td>N4</td><td>0.20386</td><td>-</td></tr><tr><td>N1</td><td>root!</td><td>-</td><td>Retrosat-2 N2 N3</td></tr><tr><td>N2</td><td>N1</td><td>0.13096</td><td>Del Peabody</td></tr><tr><td>N3</td><td>N1</td><td>0.114301</td><td>Tma N4</td></tr><tr><td>N4</td><td>N3</td><td>0.161988</td><td>Legolas T32022.14</td></tr>
</table>

|jpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
</tr>
<tr class="text"><td>0</td><td>2.7634e-005</td><td>23</td><td>1.10388e-008</td><td>46</td><td>2.95462e-010</td><td>69</td><td>1.79097e-005</td></tr><tr class="text"><td>1</td><td>0.00340934</td><td>24</td><td>4.5987e-005</td><td>47</td><td>5.46282e-007</td><td>70</td><td>1.81182e-007</td></tr><tr class="text"><td>2</td><td>6.51993e-005</td><td>25</td><td>3.68548e-007</td><td>48</td><td>2.98556e-008</td><td>71</td><td>1.97168e-009</td></tr><tr class="text"><td>3</td><td>0.012882</td><td>26</td><td>4.72605e-010</td><td>49</td><td>2.01879e-005</td><td>72</td><td>1.08361e-009</td></tr><tr class="text"><td>4</td><td>0.00034288</td><td>27</td><td>5.28418e-010</td><td>50</td><td>6.94776e-007</td><td>73</td><td>0.000331831</td></tr><tr class="text"><td>5</td><td>0.000247001</td><td>28</td><td>3.51867e-010</td><td>51</td><td>2.87177e-010</td><td>74</td><td>0.000593411</td></tr><tr class="text"><td>6</td><td>0.00108388</td><td>29</td><td>1.78104e-011</td><td>52</td><td>3.42206e-005</td><td>75</td><td>0.000232902</td></tr><tr class="text"><td>7</td><td>5.78206e-007</td><td>30</td><td>3.4521e-010</td><td>53</td><td>6.62623e-010</td><td>76</td><td>0.0157214</td></tr><tr class="text"><td>8</td><td>0.00728457</td><td>31</td><td>3.18662e-010</td><td>54</td><td>0.000318662</td><td>77</td><td>0.012882</td></tr><tr class="text"><td>9</td><td>0.000215364</td><td>32</td><td>4.15036e-005</td><td>55</td><td>3.69214e-008</td><td>78</td><td>0.000992219</td></tr><tr class="text"><td>10</td><td>2.55547e-005</td><td>33</td><td>6.54366e-011</td><td>56</td><td>0.000116756</td><td>79</td><td>0.000405409</td></tr><tr class="text"><td>11</td><td>4.90025e-006</td><td>34</td><td>3.08845e-007</td><td>57</td><td>2.46362e-010</td><td>80</td><td>0.00607546</td></tr><tr class="text"><td>12</td><td>3.84603e-009</td><td>35</td><td>9.93104e-006</td><td>58</td><td>0.000301277</td><td>81</td><td>0.0157214</td></tr><tr class="text"><td>13</td><td>2.04605e-011</td><td>36</td><td>7.75457e-007</td><td>59</td><td>1.3389e-009</td><td>82</td><td>4.16937e-008</td></tr><tr class="text"><td>14</td><td>7.89797e-007</td><td>37</td><td>0.000278985</td><td>60</td><td>5.43052e-007</td><td>83</td><td>1.8179e-009</td></tr><tr class="text"><td>15</td><td>3.40311e-007</td><td>38</td><td>8.54457e-007</td><td>61</td><td>2.43292e-007</td><td>84</td><td>1.31705e-005</td></tr><tr class="text"><td>16</td><td>1.02062e-007</td><td>39</td><td>5.85657e-008</td><td>62</td><td>1.76841e-007</td><td>85</td><td>1.49643e-006</td></tr><tr class="text"><td>17</td><td>3.83996e-006</td><td>40</td><td>1.325e-006</td><td>63</td><td>0.000375865</td><td>86</td><td>2.77732e-006</td></tr><tr class="text"><td>18</td><td>0.0256058</td><td>41</td><td>2.83972e-011</td><td>64</td><td>0.0157214</td><td>87</td><td>2.46585e-010</td></tr><tr class="text"><td>19</td><td>1.20809e-005</td><td>42</td><td>1.64652e-005</td><td>65</td><td>0.000717642</td><td>88</td><td>2.13213e-006</td></tr><tr class="text"><td>20</td><td>8.14809e-008</td><td>43</td><td>1.80542e-009</td><td>66</td><td>1.43404e-006</td><td>89</td><td>1.83085e-005</td></tr><tr class="text"><td>21</td><td>2.57073e-006</td><td>44</td><td>2.95731e-007</td><td>67</td><td>6.58007e-007</td><td>90</td><td>0.00425104</td></tr><tr class="text"><td>22</td><td>8.98156e-008</td><td>45</td><td>0.00917882</td><td>68</td><td>4.14629e-007</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-1216.83</td></tr>
</table>

|jrof_output=
<align id="del" folder="jrof"></align>

|mpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
</tr>
<tr class="text"><td>0</td><td>3.58e-005</td><td>23</td><td>4.47251e-008</td><td>46</td><td>1.71163e-009</td><td>69</td><td>1.84782e-005</td></tr><tr class="text"><td>1</td><td>0.00342907</td><td>24</td><td>4.98009e-005</td><td>47</td><td>2.24501e-006</td><td>70</td><td>1.96813e-007</td></tr><tr class="text"><td>2</td><td>0.000118185</td><td>25</td><td>3.8085e-007</td><td>48</td><td>6.66948e-008</td><td>71</td><td>1.34856e-008</td></tr><tr class="text"><td>3</td><td>0.0128872</td><td>26</td><td>1.31548e-009</td><td>49</td><td>2.14938e-005</td><td>72</td><td>6.23089e-009</td></tr><tr class="text"><td>4</td><td>0.000368313</td><td>27</td><td>2.51826e-009</td><td>50</td><td>1.1961e-006</td><td>73</td><td>0.000363925</td></tr><tr class="text"><td>5</td><td>0.000252836</td><td>28</td><td>3.56181e-009</td><td>51</td><td>5.11957e-010</td><td>74</td><td>0.000686706</td></tr><tr class="text"><td>6</td><td>0.00108462</td><td>29</td><td>1.76943e-010</td><td>52</td><td>5.39671e-005</td><td>75</td><td>0.000249252</td></tr><tr class="text"><td>7</td><td>1.14753e-006</td><td>30</td><td>2.1816e-009</td><td>53</td><td>1.53843e-009</td><td>76</td><td>0.0157456</td></tr><tr class="text"><td>8</td><td>0.00728899</td><td>31</td><td>1.59924e-009</td><td>54</td><td>0.000350446</td><td>77</td><td>0.0128872</td></tr><tr class="text"><td>9</td><td>0.00031009</td><td>32</td><td>4.28742e-005</td><td>55</td><td>2.98826e-007</td><td>78</td><td>0.000992838</td></tr><tr class="text"><td>10</td><td>3.22474e-005</td><td>33</td><td>5.4568e-010</td><td>56</td><td>0.000117233</td><td>79</td><td>0.000418738</td></tr><tr class="text"><td>11</td><td>4.99118e-006</td><td>34</td><td>8.69656e-007</td><td>57</td><td>1.5566e-009</td><td>80</td><td>0.00607547</td></tr><tr class="text"><td>12</td><td>9.63833e-009</td><td>35</td><td>1.7958e-005</td><td>58</td><td>0.00132329</td><td>81</td><td>0.0157456</td></tr><tr class="text"><td>13</td><td>2.63661e-010</td><td>36</td><td>1.59509e-006</td><td>59</td><td>4.25748e-009</td><td>82</td><td>1.44756e-007</td></tr><tr class="text"><td>14</td><td>1.2906e-006</td><td>37</td><td>0.000280208</td><td>60</td><td>1.05817e-006</td><td>83</td><td>5.82169e-009</td></tr><tr class="text"><td>15</td><td>4.9634e-007</td><td>38</td><td>1.45689e-006</td><td>61</td><td>6.01537e-007</td><td>84</td><td>1.34158e-005</td></tr><tr class="text"><td>16</td><td>1.12732e-007</td><td>39</td><td>1.19974e-007</td><td>62</td><td>5.27854e-007</td><td>85</td><td>4.19233e-006</td></tr><tr class="text"><td>17</td><td>2.3916e-005</td><td>40</td><td>2.84404e-006</td><td>63</td><td>0.000382615</td><td>86</td><td>4.07863e-006</td></tr><tr class="text"><td>18</td><td>0.058676</td><td>41</td><td>2.06724e-010</td><td>64</td><td>0.0157456</td><td>87</td><td>5.64738e-010</td></tr><tr class="text"><td>19</td><td>1.40461e-005</td><td>42</td><td>1.84375e-005</td><td>65</td><td>0.000772417</td><td>88</td><td>4.05002e-006</td></tr><tr class="text"><td>20</td><td>3.30395e-007</td><td>43</td><td>3.51732e-009</td><td>66</td><td>1.61425e-006</td><td>89</td><td>2.0148e-005</td></tr><tr class="text"><td>21</td><td>3.16396e-006</td><td>44</td><td>7.55317e-007</td><td>67</td><td>2.26968e-006</td><td>90</td><td>0.00425114</td></tr><tr class="text"><td>22</td><td>2.31437e-007</td><td>45</td><td>0.0163371</td><td>68</td><td>4.68957e-007</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-1154.91</td></tr>
</table>

|mrof_output=
<align id="del" folder="mrof"></align>

|sequence_logo=
[[Image:Logo_del.png|500px|center]]

|hmms=
<pre>
>AP_del profile HMM generated consensus sequence
fDsGATHsFISpemvgkmgeirkeplgdpgvVnaAgGsstsvtgSvvkgvpisInGrem
paDLIilpledhDVILGMDWLakYrvvlDC
</pre>

|pairwise_alignment=
<pre>
Domain 1 of 1, from 1 to 89: score 77.0, E = 6.8e-24

DTG_ILG template ->vDTGAsvlsviskecklaqklgltrkkafdpSSYvCivtllsysqPs
+D+GA++ s+is+e ++ k+g+ rk +P+
AP_del 1 FDSGATH-SFISPE--MVGKMGEIRK------------------EPL 26

sktsttaqdtirgagGqskiyvSklktsgqirknllslvtikitkGnvTe
++++ + +agG+s + ++g++ k+ v i+i+ G
AP_del 27 GDPGV-----VNAAGGSSTS------VTGSVVKG----VPISIN-G---- 56

venrslpsdgvflvvtdpedqksrydvILGrldfLrqlnsvhidl<-
r++p d ++ ++ed dvILG+ d+L ++ v d+
AP_del 57 ---REMPAD--LIIL-PLED----HDVILGM-DWLAKYRVV-LDC 89
</pre>
}}