imported>Gydbwiki: New page: {{CAARD |pin_output= (((HMS-Beagle:0.330354,Yoyo:0.297553)N2:0.168252,(((17.6:0.271949,(297:0.251767,Tom:0.225220)N6:0.147499)N5:0.059692, (Tv1:0.398768,Idefix:0.339277)N7:0.048622)N4:0.40...

2009-05-08T14:04:21Z

New page: {{CAARD |pin_output= (((HMS-Beagle:0.330354,Yoyo:0.297553)N2:0.168252,(((17.6:0.271949,(297:0.251767,Tom:0.225220)N6:0.147499)N5:0.059692, (Tv1:0.398768,Idefix:0.339277)N7:0.048622)N4:0.40...

New page

{{CAARD
|pin_output=
(((HMS-Beagle:0.330354,Yoyo:0.297553)N2:0.168252,(((17.6:0.271949,(297:0.251767,Tom:0.225220)N6:0.147499)N5:0.059692, (Tv1:0.398768,Idefix:0.339277)N7:0.048622)N4:0.405904,(Ted:0.408362,Zam:0.561082)N8:0.129785)N3:0.168457,(Nomad:0.459431, (Burdock:0.215663,(Springer:0.239440,(Gypsyvir:0.176204,Gypsy:0.169050)N12:0.145405)N11:0.058741)N10:0.151782)N9:0.046488);

|fin_output=
<table class="tabdata">
<tr class="grey">
<td>Name</td>
<td>Father</td>
<td>Distance to father</td>
<td>Sons</td>
</tr>
<tr><td>HMS-Beagle</td><td>N2</td><td>0.330354</td><td>-</td></tr><tr><td>Yoyo</td><td>N2</td><td>0.297553</td><td>-</td></tr><tr><td>17.6</td><td>N5</td><td>0.271949</td><td>-</td></tr><tr><td>297</td><td>N6</td><td>0.251767</td><td>-</td></tr><tr><td>Tom</td><td>N6</td><td>0.22522</td><td>-</td></tr><tr><td>Tv1</td><td>N7</td><td>0.398768</td><td>-</td></tr><tr><td>Idefix</td><td>N7</td><td>0.339277</td><td>-</td></tr><tr><td>Ted</td><td>N8</td><td>0.408362</td><td>-</td></tr><tr><td>Zam</td><td>N8</td><td>0.561082</td><td>-</td></tr><tr><td>Nomad</td><td>N9</td><td>0.459431</td><td>-</td></tr><tr><td>Burdock</td><td>N10</td><td>0.215663</td><td>-</td></tr><tr><td>Springer</td><td>N11</td><td>0.23944</td><td>-</td></tr><tr><td>Gypsyvir</td><td>N12</td><td>0.176204</td><td>-</td></tr><tr><td>Gypsy</td><td>N12</td><td>0.16905</td><td>-</td></tr><tr><td>N1</td><td>root!</td><td>-</td><td>N2 N3 N9</td></tr><tr><td>N2</td><td>N1</td><td>0.168252</td><td>HMS-Beagle Yoyo</td></tr><tr><td>N3</td><td>N1</td><td>0.168457</td><td>N4 N8</td></tr><tr><td>N4</td><td>N3</td><td>0.405904</td><td>N5 N7</td></tr><tr><td>N5</td><td>N4</td><td>0.059692</td><td>17.6 N6</td></tr><tr><td>N6</td><td>N5</td><td>0.147499</td><td>297 Tom</td></tr><tr><td>N7</td><td>N4</td><td>0.048622</td><td>Tv1 Idefix</td></tr><tr><td>N8</td><td>N3</td><td>0.129785</td><td>Ted Zam</td></tr><tr><td>N9</td><td>N1</td><td>0.0464883</td><td>Nomad N10</td></tr><tr><td>N10</td><td>N9</td><td>0.151782</td><td>Burdock N11</td></tr><tr><td>N11</td><td>N10</td><td>0.058741</td><td>Springer N12</td></tr><tr><td>N12</td><td>N11</td><td>0.145405</td><td>Gypsyvir Gypsy</td></tr>
</table>

|jpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
</tr>
<tr class="text"><td>0</td><td>2.73491e-006</td><td>26</td><td>2.20859e-016</td><td>52</td><td>4.12105e-012</td><td>78</td><td>0.00944641</td></tr><tr class="text"><td>1</td><td>0.000141637</td><td>27</td><td>5.5953e-017</td><td>53</td><td>7.42747e-006</td><td>79</td><td>3.65488e-005</td></tr><tr class="text"><td>2</td><td>2.92433e-005</td><td>28</td><td>5.47157e-009</td><td>54</td><td>6.83881e-013</td><td>80</td><td>7.78321e-014</td></tr><tr class="text"><td>3</td><td>2.00053e-005</td><td>29</td><td>0.00554974</td><td>55</td><td>3.23326e-017</td><td>81</td><td>1.39678e-013</td></tr><tr class="text"><td>4</td><td>4.82705e-008</td><td>30</td><td>1.06009e-012</td><td>56</td><td>1.26219e-016</td><td>82</td><td>3.19738e-008</td></tr><tr class="text"><td>5</td><td>1.76965e-010</td><td>31</td><td>7.205e-017</td><td>57</td><td>3.40362e-008</td><td>83</td><td>7.48363e-005</td></tr><tr class="text"><td>6</td><td>7.19523e-010</td><td>32</td><td>8.74879e-010</td><td>58</td><td>1.28019e-014</td><td>84</td><td>1.52091e-007</td></tr><tr class="text"><td>7</td><td>8.55598e-008</td><td>33</td><td>1.18952e-020</td><td>59</td><td>3.59545e-015</td><td>85</td><td>6.99411e-014</td></tr><tr class="text"><td>8</td><td>6.11396e-012</td><td>34</td><td>1.04749e-009</td><td>60</td><td>1.03812e-011</td><td>86</td><td>1.04491e-005</td></tr><tr class="text"><td>9</td><td>2.92e-010</td><td>35</td><td>0.00617331</td><td>61</td><td>4.01989e-009</td><td>87</td><td>2.23165e-009</td></tr><tr class="text"><td>10</td><td>2.04326e-018</td><td>36</td><td>1.99809e-013</td><td>62</td><td>0.000213424</td><td>88</td><td>0.00172442</td></tr><tr class="text"><td>11</td><td>3.13861e-012</td><td>37</td><td>6.05687e-012</td><td>63</td><td>2.55562e-016</td><td>89</td><td>1.23558e-015</td></tr><tr class="text"><td>12</td><td>1.58675e-015</td><td>38</td><td>0.000124896</td><td>64</td><td>2.34014e-018</td><td>90</td><td>1.26423e-007</td></tr><tr class="text"><td>13</td><td>2.32747e-010</td><td>39</td><td>0.00351219</td><td>65</td><td>9.16777e-024</td><td>91</td><td>4.44034e-012</td></tr><tr class="text"><td>14</td><td>0.00658</td><td>40</td><td>5.56938e-015</td><td>66</td><td>9.22309e-019</td><td>92</td><td>5.88021e-005</td></tr><tr class="text"><td>15</td><td>2.10189e-019</td><td>41</td><td>2.68086e-007</td><td>67</td><td>6.41585e-021</td><td>93</td><td>1.11737e-013</td></tr><tr class="text"><td>16</td><td>5.16281e-016</td><td>42</td><td>0.000804845</td><td>68</td><td>4.84037e-018</td><td>94</td><td>9.37417e-016</td></tr><tr class="text"><td>17</td><td>2.50078e-017</td><td>43</td><td>0.00879857</td><td>69</td><td>4.23806e-006</td><td>95</td><td>7.43669e-015</td></tr><tr class="text"><td>18</td><td>1.27177e-011</td><td>44</td><td>4.95927e-013</td><td>70</td><td>0.0106926</td><td>96</td><td>1.10372e-016</td></tr><tr class="text"><td>19</td><td>1.48158e-010</td><td>45</td><td>6.65318e-012</td><td>71</td><td>0.0258576</td><td>97</td><td>0.00558862</td></tr><tr class="text"><td>20</td><td>1.59814e-015</td><td>46</td><td>3.71894e-007</td><td>72</td><td>3.15546e-005</td><td>98</td><td>4.29279e-009</td></tr><tr class="text"><td>21</td><td>1.89532e-013</td><td>47</td><td>9.89133e-014</td><td>73</td><td>3.06932e-005</td><td>99</td><td>1.7233e-016</td></tr><tr class="text"><td>22</td><td>8.67425e-019</td><td>48</td><td>4.76685e-006</td><td>74</td><td>2.86263e-013</td><td>100</td><td>2.87365e-007</td></tr><tr class="text"><td>23</td><td>8.79362e-006</td><td>49</td><td>7.88021e-017</td><td>75</td><td>1.29266e-009</td><td>101</td><td>1.15411e-014</td></tr><tr class="text"><td>24</td><td>1.19392e-005</td><td>50</td><td>9.47419e-005</td><td>76</td><td>4.62829e-011</td><td>102</td><td>7.87207e-011</td></tr><tr class="text"><td>25</td><td>1.42475e-017</td><td>51</td><td>5.75809e-016</td><td>77</td><td>1.65233e-020</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-2433.38</td></tr>
</table>

|jrof_output=
<align id="errantiviridae3" folder="jrof"></align>

|mpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
</tr>
<tr class="text"><td>0</td><td>2.87274e-006</td><td>26</td><td>9.12321e-016</td><td>52</td><td>1.09761e-011</td><td>78</td><td>0.058676</td></tr><tr class="text"><td>1</td><td>0.000142921</td><td>27</td><td>1.69004e-016</td><td>53</td><td>9.00845e-005</td><td>79</td><td>3.85878e-005</td></tr><tr class="text"><td>2</td><td>2.94429e-005</td><td>28</td><td>8.00653e-008</td><td>54</td><td>2.13425e-012</td><td>80</td><td>2.0354e-013</td></tr><tr class="text"><td>3</td><td>2.03323e-005</td><td>29</td><td>0.058565</td><td>55</td><td>2.66264e-015</td><td>81</td><td>5.03438e-013</td></tr><tr class="text"><td>4</td><td>1.33302e-007</td><td>30</td><td>1.9785e-012</td><td>56</td><td>1.02019e-015</td><td>82</td><td>7.95216e-008</td></tr><tr class="text"><td>5</td><td>4.17371e-010</td><td>31</td><td>1.07869e-015</td><td>57</td><td>1.15428e-007</td><td>83</td><td>7.62803e-005</td></tr><tr class="text"><td>6</td><td>1.23558e-009</td><td>32</td><td>3.18943e-009</td><td>58</td><td>3.4691e-013</td><td>84</td><td>1.61364e-007</td></tr><tr class="text"><td>7</td><td>1.65518e-007</td><td>33</td><td>1.08699e-019</td><td>59</td><td>3.24599e-014</td><td>85</td><td>1.28105e-013</td></tr><tr class="text"><td>8</td><td>2.04006e-011</td><td>34</td><td>2.53163e-009</td><td>60</td><td>6.14257e-011</td><td>86</td><td>1.17027e-005</td></tr><tr class="text"><td>9</td><td>4.40765e-010</td><td>35</td><td>0.076748</td><td>61</td><td>1.08979e-007</td><td>87</td><td>2.8583e-009</td></tr><tr class="text"><td>10</td><td>2.15072e-017</td><td>36</td><td>4.06744e-013</td><td>62</td><td>0.000561817</td><td>88</td><td>0.00172555</td></tr><tr class="text"><td>11</td><td>5.42116e-012</td><td>37</td><td>1.40157e-011</td><td>63</td><td>3.14475e-016</td><td>89</td><td>7.61517e-015</td></tr><tr class="text"><td>12</td><td>9.36008e-015</td><td>38</td><td>0.000126504</td><td>64</td><td>1.12392e-017</td><td>90</td><td>1.43029e-007</td></tr><tr class="text"><td>13</td><td>5.81735e-009</td><td>39</td><td>0.042645</td><td>65</td><td>1.11673e-022</td><td>91</td><td>1.10078e-011</td></tr><tr class="text"><td>14</td><td>0.066005</td><td>40</td><td>3.47183e-014</td><td>66</td><td>7.51499e-018</td><td>92</td><td>6.17812e-005</td></tr><tr class="text"><td>15</td><td>1.60065e-018</td><td>41</td><td>8.9673e-007</td><td>67</td><td>5.57004e-019</td><td>93</td><td>3.75948e-013</td></tr><tr class="text"><td>16</td><td>6.95682e-015</td><td>42</td><td>0.0103865</td><td>68</td><td>1.42412e-017</td><td>94</td><td>3.00992e-015</td></tr><tr class="text"><td>17</td><td>1.73244e-016</td><td>43</td><td>0.0345596</td><td>69</td><td>6.64938e-005</td><td>95</td><td>1.16281e-014</td></tr><tr class="text"><td>18</td><td>1.92441e-011</td><td>44</td><td>1.58275e-012</td><td>70</td><td>0.058676</td><td>96</td><td>4.21128e-016</td></tr><tr class="text"><td>19</td><td>6.49989e-009</td><td>45</td><td>1.10513e-011</td><td>71</td><td>0.091904</td><td>97</td><td>0.040752</td></tr><tr class="text"><td>20</td><td>5.45467e-015</td><td>46</td><td>2.08709e-005</td><td>72</td><td>3.17935e-005</td><td>98</td><td>9.56084e-009</td></tr><tr class="text"><td>21</td><td>9.51639e-013</td><td>47</td><td>1.59945e-012</td><td>73</td><td>9.47168e-005</td><td>99</td><td>1.36285e-015</td></tr><tr class="text"><td>22</td><td>2.49386e-017</td><td>48</td><td>3.67835e-005</td><td>74</td><td>7.40621e-013</td><td>100</td><td>3.9867e-007</td></tr><tr class="text"><td>23</td><td>0.000206364</td><td>49</td><td>1.89877e-016</td><td>75</td><td>2.62746e-009</td><td>101</td><td>4.26779e-014</td></tr><tr class="text"><td>24</td><td>0.000169346</td><td>50</td><td>0.00138433</td><td>76</td><td>5.21358e-011</td><td>102</td><td>9.76675e-011</td></tr><tr class="text"><td>25</td><td>3.76171e-017</td><td>51</td><td>4.80593e-015</td><td>77</td><td>3.00597e-019</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-2282.45</td></tr>
</table>

|mrof_output=
<align id="errantiviridae3" folder="mrof"></align>

|sequence_logo=
[[Image:Logo_errantiviridae.png|500px|center]]

|hmms=
<pre>
>AP_errantiviridae profile HMM generated consensus sequence
IDTGSnkNyIrpnllklpvqntfsVttihGitlkrslnipskfntteqFFlLhslssyF
DglIGrdlLkqaeAkidl
</pre>

|pairwise_alignment=
<pre>
Domain 1 of 1, from 1 to 77: score 43.4, E = 8.7e-14

DTG_ILG template *->vDTGAsvlsviskecklaqklgltrkkafdpSSYvCivtllsysqPs
+DTG++ + i ++ ++kl P
AP_erranti 1 IDTGSNK-NYIRPN---LLKL------------------------PV 19

sktsttaqdtirgagGqskiyvSklktsgqirknllslvtikitkGnvTe
++t+ +++++G++ + +++ + k +
AP_erranti 20 QNTFS-----VTTIHGITLK-----RSLN---------IPSKFN-T---- 45

venrslpsdgvflvvtdpedqksrydvILGrldfLrqlnsvhidl<-*
+++ f+++++++ ++d+++Gr d+L+q++++ idl
AP_erranti 46 ------TEQ--FFLLHSLSS---YFDGLIGR-DLLKQAEAK-IDL 77
</pre>
}}

CAARD:Errantiviridae - Revision history

imported>Gydbwiki: New page: {{CAARD |pin_output= (((HMS-Beagle:0.330354,Yoyo:0.297553)N2:0.168252,(((17.6:0.271949,(297:0.251767,Tom:0.225220)N6:0.147499)N5:0.059692, (Tv1:0.398768,Idefix:0.339277)N7:0.048622)N4:0.40...