CAARD:Galadriel - Revision history

imported>Gydbwiki: New page: {{CAARD |pin_output= (Monkey:0.345284,Tntom1:0.656479,Galadriel:0.416213); |fin_output=

Name Father Distance to fat...
2009-05-08T14:15:20Z

New page: {{CAARD |pin_output= (Monkey:0.345284,Tntom1:0.656479,Galadriel:0.416213); |fin_output= <table class="tabdata"> <tr class="grey"> <td>Name</td> <td>Father</td> <td>Distance to fat...

New page
{{CAARD
|pin_output=
(Monkey:0.345284,Tntom1:0.656479,Galadriel:0.416213);

|fin_output=
<table class="tabdata">
<tr class="grey">
<td>Name</td>
<td>Father</td>
<td>Distance to father</td>
<td>Sons</td>
</tr>
<tr><td>Monkey</td><td>N1</td><td>0.345284</td><td>-</td></tr><tr><td>Tntom1</td><td>N1</td><td>0.656479</td><td>-</td></tr><tr><td>Galadriel</td><td>N1</td><td>0.416213</td><td>-</td></tr><tr><td>N1</td><td>root!</td><td>-</td><td>Monkey Tntom1 Galadriel</td></tr>
</table>

|jpf_output=
<table class="tabdata">
<tbody><tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
</tr>
<tr class="text"><td>0</td><td>0.00435265</td><td>22</td><td>4.39034e-005</td><td>44</td><td>8.86582e-005</td><td>66</td><td>0.0128943</td></tr><tr class="text"><td>1</td><td>0.0128943</td><td>23</td><td>0.017482</td><td>45</td><td>0.0132419</td><td>67</td><td>0.0166531</td></tr><tr class="text"><td>2</td><td>0.00973624</td><td>24</td><td>0.00142395</td><td>46</td><td>0.00142169</td><td>68</td><td>0.000811327</td></tr><tr class="text"><td>3</td><td>0.0298774</td><td>25</td><td>0.000587456</td><td>47</td><td>0.000229269</td><td>69</td><td>0.00045092</td></tr><tr class="text"><td>4</td><td>0.0145309</td><td>26</td><td>0.00142395</td><td>48</td><td>0.000360186</td><td>70</td><td>0.0102745</td></tr><tr class="text"><td>5</td><td>0.00973624</td><td>27</td><td>2.59725e-005</td><td>49</td><td>0.000133929</td><td>71</td><td>0.0031658</td></tr><tr class="text"><td>6</td><td>0.00475066</td><td>28</td><td>0.000414224</td><td>50</td><td>0.0116207</td><td>72</td><td>0.00076531</td></tr><tr class="text"><td>7</td><td>0.000505551</td><td>29</td><td>0.017482</td><td>51</td><td>0.0298774</td><td>73</td><td>0.000168744</td></tr><tr class="text"><td>8</td><td>0.00190066</td><td>30</td><td>0.000210086</td><td>52</td><td>1.78049e-005</td><td>74</td><td>0.00283365</td></tr><tr class="text"><td>9</td><td>0.000542969</td><td>31</td><td>0.00435265</td><td>53</td><td>0.000138536</td><td>75</td><td>0.0166531</td></tr><tr class="text"><td>10</td><td>0.000347887</td><td>32</td><td>0.00746587</td><td>54</td><td>2.43072e-005</td><td>76</td><td>0.0011319</td></tr><tr class="text"><td>11</td><td>1.66899e-005</td><td>33</td><td>0.00139974</td><td>55</td><td>0.0298774</td><td>77</td><td>0.000348528</td></tr><tr class="text"><td>12</td><td>8.23347e-005</td><td>34</td><td>1.20178e-005</td><td>56</td><td>0.000550171</td><td>78</td><td>1.53855e-005</td></tr><tr class="text"><td>13</td><td>1.03668e-006</td><td>35</td><td>0.00131341</td><td>57</td><td>1.68356e-006</td><td>79</td><td>9.15489e-006</td></tr><tr class="text"><td>14</td><td>0.00205483</td><td>36</td><td>0.000590409</td><td>58</td><td>0.00746587</td><td>80</td><td>6.70009e-005</td></tr><tr class="text"><td>15</td><td>2.48664e-005</td><td>37</td><td>1.75236e-005</td><td>59</td><td>0.0011319</td><td>81</td><td>1.58093e-005</td></tr><tr class="text"><td>16</td><td>3.97823e-005</td><td>38</td><td>0.00424187</td><td>60</td><td>0.000121839</td><td>82</td><td>0.00088152</td></tr><tr class="text"><td>17</td><td>0.037141</td><td>39</td><td>3.19577e-005</td><td>61</td><td>0.00108207</td><td>83</td><td>0.0185498</td></tr><tr class="text"><td>18</td><td>0.0298774</td><td>40</td><td>0.0298774</td><td>62</td><td>0.000514005</td><td>84</td><td>1.28354e-005</td></tr><tr class="text"><td>19</td><td>0.037141</td><td>41</td><td>0.000133148</td><td>63</td><td>0.000226639</td><td> </td><td> </td></tr><tr class="text"><td>20</td><td>2.98646e-005</td><td>42</td><td>0.0145309</td><td>64</td><td>0.00311011</td><td> </td><td> </td></tr><tr class="text"><td>21</td><td>0.0031658</td><td>43</td><td>6.14778e-006</td><td>65</td><td>0.000633224</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-616.675</td></tr>
</table>

|jrof_output=
<align id="galadriel" folder="jrof"></align>

|mpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
</tr>
<tr class="text"><td>0</td><td>0.00497409</td><td>22</td><td>9.57164e-005</td><td>44</td><td>0.000135022</td><td>66</td><td>0.0130085</td></tr><tr class="text"><td>1</td><td>0.0130085</td><td>23</td><td>0.0175711</td><td>45</td><td>0.0135196</td><td>67</td><td>0.01667</td></tr><tr class="text"><td>2</td><td>0.00981198</td><td>24</td><td>0.00154107</td><td>46</td><td>0.00151179</td><td>68</td><td>0.000951385</td></tr><tr class="text"><td>3</td><td>0.0298983</td><td>25</td><td>0.000598378</td><td>47</td><td>0.000413108</td><td>69</td><td>0.00100821</td></tr><tr class="text"><td>4</td><td>0.0146619</td><td>26</td><td>0.00154107</td><td>48</td><td>0.000397726</td><td>70</td><td>0.0104607</td></tr><tr class="text"><td>5</td><td>0.00981198</td><td>27</td><td>3.56048e-005</td><td>49</td><td>0.000201102</td><td>71</td><td>0.00332276</td></tr><tr class="text"><td>6</td><td>0.00475666</td><td>28</td><td>0.000565964</td><td>50</td><td>0.014261</td><td>72</td><td>0.000782294</td></tr><tr class="text"><td>7</td><td>0.000561782</td><td>29</td><td>0.0175711</td><td>51</td><td>0.0298983</td><td>73</td><td>0.000333559</td></tr><tr class="text"><td>8</td><td>0.00199282</td><td>30</td><td>0.000323998</td><td>52</td><td>5.37441e-005</td><td>74</td><td>0.0035152</td></tr><tr class="text"><td>9</td><td>0.0010246</td><td>31</td><td>0.00497409</td><td>53</td><td>0.000138849</td><td>75</td><td>0.01667</td></tr><tr class="text"><td>10</td><td>0.000393308</td><td>32</td><td>0.00749741</td><td>54</td><td>4.74739e-005</td><td>76</td><td>0.00139377</td></tr><tr class="text"><td>11</td><td>2.77674e-005</td><td>33</td><td>0.0017325</td><td>55</td><td>0.0298983</td><td>77</td><td>0.000405723</td></tr><tr class="text"><td>12</td><td>0.000185435</td><td>34</td><td>3.21234e-005</td><td>56</td><td>0.000606874</td><td>78</td><td>5.15036e-005</td></tr><tr class="text"><td>13</td><td>3.20461e-006</td><td>35</td><td>0.00141648</td><td>57</td><td>4.6506e-006</td><td>79</td><td>2.14636e-005</td></tr><tr class="text"><td>14</td><td>0.00219873</td><td>36</td><td>0.000680143</td><td>58</td><td>0.00749741</td><td>80</td><td>0.000108802</td></tr><tr class="text"><td>15</td><td>4.43253e-005</td><td>37</td><td>5.73834e-005</td><td>59</td><td>0.00139377</td><td>81</td><td>5.46793e-005</td></tr><tr class="text"><td>16</td><td>4.94017e-005</td><td>38</td><td>0.00476255</td><td>60</td><td>0.000123973</td><td>82</td><td>0.000986007</td></tr><tr class="text"><td>17</td><td>0.0372331</td><td>39</td><td>8.07984e-005</td><td>61</td><td>0.00129798</td><td>83</td><td>0.0185611</td></tr><tr class="text"><td>18</td><td>0.0298983</td><td>40</td><td>0.0298983</td><td>62</td><td>0.000647968</td><td>84</td><td>3.18518e-005</td></tr><tr class="text"><td>19</td><td>0.0372331</td><td>41</td><td>0.000309339</td><td>63</td><td>0.000233134</td><td> </td><td> </td></tr><tr class="text"><td>20</td><td>4.74741e-005</td><td>42</td><td>0.0146619</td><td>64</td><td>0.00327119</td><td> </td><td> </td></tr><tr class="text"><td>21</td><td>0.00332276</td><td>43</td><td>1.18557e-005</td><td>65</td><td>0.000702216</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-591.802</td></tr>
</table>

|mrof_output=
<align id="galadriel" folder="mrof"></align>

|sequence_logo=
[[Image:Logo_galadriel.png|500px|center]]

|hmms=
<pre>
>AP_galadriel profile HMM generated consensus sequence
vDTGATHnFiavreaqrLGLtlgKspshvKavNskaqpisGlAngVpikiWGnwgGnhN
LmvvpldDFeiIlgleFLrqakfvPm
</pre>

|pairwise_alignment=
<pre>
Domain 1 of 1, from 1 to 85: score 68.4, E = 2.5e-21

DTG_ILG template ->vDTGAsvlsviskecklaqklgltrkkafdpSSYvCivtllsysqPs
vDTGA++ ++i + +aq+lgl ++++
AP_galadri 1 VDTGATH-NFIAVR--EAQRLGL--------------------TLGK 24

sktsttaqdtirgagGqskiyvSklktsgqirknllslvtikitkGnvTe
s +s+ +++++ ++++ ++sg+ + v iki+ G
AP_galadri 25 S-PSH-----VKAVN-SKAQ-----PISGLANG-----VPIKIW-G---- 52

venrslpsdgvflvvtdpedqksrydvILGrldfLrqlnsvhidl<-
n+ ++ +vv +++d +++ILG+ fLrq+++ + +
AP_galadri 53 --NWGGNHN--LMVV-PLDD----FEIILGL-EFLRQAKF--VPM 85
</pre>
}}