CAARD:Micropia - Revision history

imported>Gydbwiki: New page: {{CAARD |pin_output= (Blastopia:0.881961,Micropia:0.902983,Mdg3:0.704110); |fin_output=

Name Father Distance to fat...
2009-05-08T13:32:22Z

New page: {{CAARD |pin_output= (Blastopia:0.881961,Micropia:0.902983,Mdg3:0.704110); |fin_output= <table class="tabdata"> <tr class="grey"> <td>Name</td> <td>Father</td> <td>Distance to fat...

New page
{{CAARD
|pin_output=
(Blastopia:0.881961,Micropia:0.902983,Mdg3:0.704110);

|fin_output=
<table class="tabdata">
<tr class="grey">
<td>Name</td>
<td>Father</td>
<td>Distance to father</td>
<td>Sons</td>
</tr>
<tr><td>Blastopia</td><td>N1</td><td>0.881961</td><td>-</td></tr><tr><td>Micropia</td><td>N1</td><td>0.902983</td><td>-</td></tr><tr><td>Mdg3</td><td>N1</td><td>0.70411</td><td>-</td></tr><tr><td>N1</td><td>root!</td><td>-</td><td>Blastopia Micropia Mdg3</td></tr>
</table>

|jpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
</tr>
<tr class="text"><td>0</td><td>0.000120621</td><td>23</td><td>6.1784e-005</td><td>46</td><td>0.000248546</td><td>69</td><td>3.8746e-005</td></tr><tr class="text"><td>1</td><td>0.00505609</td><td>24</td><td>0.000164728</td><td>47</td><td>0.000454885</td><td>70</td><td>7.00993e-005</td></tr><tr class="text"><td>2</td><td>0.000828498</td><td>25</td><td>0.00285535</td><td>48</td><td>0.0527004</td><td>71</td><td>0.000423756</td></tr><tr class="text"><td>3</td><td>0.0156117</td><td>26</td><td>0.0287569</td><td>49</td><td>9.82184e-005</td><td>72</td><td>1.03041e-005</td></tr><tr class="text"><td>4</td><td>0.000960219</td><td>27</td><td>0.00103651</td><td>50</td><td>0.00184937</td><td>73</td><td>0.000759638</td></tr><tr class="text"><td>5</td><td>3.91208e-005</td><td>28</td><td>3.53772e-006</td><td>51</td><td>1.94861e-005</td><td>74</td><td>0.000124155</td></tr><tr class="text"><td>6</td><td>3.15652e-005</td><td>29</td><td>1.24394e-005</td><td>52</td><td>0.000733616</td><td>75</td><td>0.00106404</td></tr><tr class="text"><td>7</td><td>0.000828498</td><td>30</td><td>1.0724e-005</td><td>53</td><td>7.25179e-005</td><td>76</td><td>0.00041562</td></tr><tr class="text"><td>8</td><td>0.00106404</td><td>31</td><td>0.0156117</td><td>54</td><td>0.000441945</td><td>77</td><td>0.0156117</td></tr><tr class="text"><td>9</td><td>0.0035093</td><td>32</td><td>0.00228709</td><td>55</td><td>2.56027e-005</td><td>78</td><td>0.000359807</td></tr><tr class="text"><td>10</td><td>0.00755849</td><td>33</td><td>0.000501835</td><td>56</td><td>8.29458e-006</td><td>79</td><td>0.00217776</td></tr><tr class="text"><td>11</td><td>0.000216299</td><td>34</td><td>0.00027589</td><td>57</td><td>3.35713e-006</td><td>80</td><td>0.000487169</td></tr><tr class="text"><td>12</td><td>7.83796e-005</td><td>35</td><td>1.4141e-005</td><td>58</td><td>8.98432e-006</td><td>81</td><td>0.00223221</td></tr><tr class="text"><td>13</td><td>0.000766705</td><td>36</td><td>0.000114135</td><td>59</td><td>1.444e-005</td><td>82</td><td>9.10784e-005</td></tr><tr class="text"><td>14</td><td>1.95284e-005</td><td>37</td><td>9.45219e-005</td><td>60</td><td>0.000246635</td><td>83</td><td>3.56096e-005</td></tr><tr class="text"><td>15</td><td>0.000132323</td><td>38</td><td>6.73408e-006</td><td>61</td><td>0.00230475</td><td>84</td><td>9.58213e-006</td></tr><tr class="text"><td>16</td><td>0.000675008</td><td>39</td><td>0.000107699</td><td>62</td><td>7.50068e-005</td><td>85</td><td>0.000479756</td></tr><tr class="text"><td>17</td><td>7.25283e-005</td><td>40</td><td>7.41301e-006</td><td>63</td><td>0.0085868</td><td>86</td><td>0.00184858</td></tr><tr class="text"><td>18</td><td>5.37412e-006</td><td>41</td><td>0.000281785</td><td>64</td><td>0.00164762</td><td>87</td><td>4.2527e-006</td></tr><tr class="text"><td>19</td><td>2.50106e-005</td><td>42</td><td>2.69642e-005</td><td>65</td><td>0.00469993</td><td>88</td><td>4.79643e-006</td></tr><tr class="text"><td>20</td><td>3.95267e-005</td><td>43</td><td>0.0245309</td><td>66</td><td>2.32289e-006</td><td>89</td><td>7.32314e-006</td></tr><tr class="text"><td>21</td><td>1.91328e-005</td><td>44</td><td>0.000203912</td><td>67</td><td>0.000955388</td><td>90</td><td>0.000125673</td></tr><tr class="text"><td>22</td><td>0.00228709</td><td>45</td><td>0.000418724</td><td>68</td><td>4.87763e-005</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-775.916</td></tr>
</table>

|jrof_output=
<align id="micropia" folder="jrof"></align>

|mpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
</tr>
<tr class="text"><td>0</td><td>0.000248511</td><td>23</td><td>9.17104e-005</td><td>46</td><td>0.00074098</td><td>69</td><td>0.000128453</td></tr><tr class="text"><td>1</td><td>0.0053195</td><td>24</td><td>0.000216649</td><td>47</td><td>0.00121157</td><td>70</td><td>8.51188e-005</td></tr><tr class="text"><td>2</td><td>0.00121043</td><td>25</td><td>0.0030227</td><td>48</td><td>0.091904</td><td>71</td><td>0.000498239</td></tr><tr class="text"><td>3</td><td>0.0156813</td><td>26</td><td>0.076748</td><td>49</td><td>0.000222311</td><td>72</td><td>2.05907e-005</td></tr><tr class="text"><td>4</td><td>0.00138864</td><td>27</td><td>0.0040906</td><td>50</td><td>0.00416143</td><td>73</td><td>0.000984194</td></tr><tr class="text"><td>5</td><td>9.13606e-005</td><td>28</td><td>1.59292e-005</td><td>51</td><td>5.58171e-005</td><td>74</td><td>0.000201166</td></tr><tr class="text"><td>6</td><td>6.35829e-005</td><td>29</td><td>7.10331e-005</td><td>52</td><td>0.00109903</td><td>75</td><td>0.00149388</td></tr><tr class="text"><td>7</td><td>0.00121043</td><td>30</td><td>2.43036e-005</td><td>53</td><td>0.000107365</td><td>76</td><td>0.00110206</td></tr><tr class="text"><td>8</td><td>0.00149388</td><td>31</td><td>0.0156813</td><td>54</td><td>0.00159359</td><td>77</td><td>0.0156813</td></tr><tr class="text"><td>9</td><td>0.00388076</td><td>32</td><td>0.0026872</td><td>55</td><td>6.94555e-005</td><td>78</td><td>0.000430033</td></tr><tr class="text"><td>10</td><td>0.00778119</td><td>33</td><td>0.000588708</td><td>56</td><td>3.32874e-005</td><td>79</td><td>0.0028563</td></tr><tr class="text"><td>11</td><td>0.000362688</td><td>34</td><td>0.000352627</td><td>57</td><td>2.49416e-005</td><td>80</td><td>0.000521539</td></tr><tr class="text"><td>12</td><td>0.000237267</td><td>35</td><td>6.24857e-005</td><td>58</td><td>2.43524e-005</td><td>81</td><td>0.00264051</td></tr><tr class="text"><td>13</td><td>0.00123557</td><td>36</td><td>0.000214597</td><td>59</td><td>6.24604e-005</td><td>82</td><td>0.000215375</td></tr><tr class="text"><td>14</td><td>6.12752e-005</td><td>37</td><td>0.00030198</td><td>60</td><td>0.00114713</td><td>83</td><td>0.000115294</td></tr><tr class="text"><td>15</td><td>0.000234473</td><td>38</td><td>1.96549e-005</td><td>61</td><td>0.00272547</td><td>84</td><td>1.54496e-005</td></tr><tr class="text"><td>16</td><td>0.000834352</td><td>39</td><td>0.000369435</td><td>62</td><td>0.000336954</td><td>85</td><td>0.00178059</td></tr><tr class="text"><td>17</td><td>0.000152418</td><td>40</td><td>2.23542e-005</td><td>63</td><td>0.022944</td><td>86</td><td>0.00219296</td></tr><tr class="text"><td>18</td><td>2.83785e-005</td><td>41</td><td>0.000317851</td><td>64</td><td>0.0027717</td><td>87</td><td>1.62377e-005</td></tr><tr class="text"><td>19</td><td>0.000114686</td><td>42</td><td>3.3452e-005</td><td>65</td><td>0.00525324</td><td>88</td><td>4.97034e-005</td></tr><tr class="text"><td>20</td><td>9.86311e-005</td><td>43</td><td>0.058565</td><td>66</td><td>8.00113e-006</td><td>89</td><td>4.77167e-005</td></tr><tr class="text"><td>21</td><td>7.18791e-005</td><td>44</td><td>0.000876904</td><td>67</td><td>0.00114109</td><td>90</td><td>0.000230245</td></tr><tr class="text"><td>22</td><td>0.0026872</td><td>45</td><td>0.000811997</td><td>68</td><td>0.00011893</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-707.39</td></tr>
</table>

|mrof_output=
<align id="micropia" folder="mrof"></align>

|sequence_logo=
[[Image:Logo_micropia.png|500px|center]]

|hmms=
<pre>
>AP_micropia_mdg3 profile HMM generated consensus sequence
iDSGSevSiIKesIfnkmmdlaLnnTaTmlrGLGNcsvkttGQTfcyiLlkgTiqenyf
hnLfHVVhDqkmryDviiGRDfLtqcnLycsp
</pre>

|pairwise_alignment=
<pre>
Domain 1 of 1, from 1 to 91: score 67.0, E = 6.6e-21

DTG_ILG template ->vDTGAsvlsviskecklaqklgltrkkafdpSSYvCivtllsysqPs
+D+G++v s+i+++ +++k++ ++++
AP_micropi 1 IDSGSEV-SIIKES--IFNKMM---------------------DLAL 23

sktsttaqdtirgagGqskiyvSklktsgqirknllslvtikitkGnvTe
++t t+ +rg G++ + kt+gq+ i ++ G++
AP_micropi 24 NNTATM----LRGL-GNCSV-----KTTGQTF------CYILLK-GTI-- 54

venrslpsdgvflvv.tdpedqksrydvILGrldfLrqlnsvhidl<-
++++ ++ f+vv+++ ++ ydvI+Gr dfL+q+n +
AP_micropi 55 --QENYFHNL-FHVVhDQKMR----YDVIIGR-DFLTQCNLY-CSP 91
</pre>
}}