CAARD:NIX - Revision history

imported>Gydbwiki: New page: {{CAARD |pin_output= (NIXMm:0.022522,NIXh3:0.056116,(NIXrn:0.019703,(NIXm:0.099440,NIXh:0.063818)N3:0.783648)N2:0.014616); |fin_output=

Name...
2009-05-08T10:11:06Z

New page: {{CAARD |pin_output= (NIXMm:0.022522,NIXh3:0.056116,(NIXrn:0.019703,(NIXm:0.099440,NIXh:0.063818)N3:0.783648)N2:0.014616); |fin_output= <table class="tabdata"> <tr class="grey"> <td>Name...

New page
{{CAARD
|pin_output=
(NIXMm:0.022522,NIXh3:0.056116,(NIXrn:0.019703,(NIXm:0.099440,NIXh:0.063818)N3:0.783648)N2:0.014616);

|fin_output=
<table class="tabdata">
<tr class="grey">
<td>Name</td>
<td>Father</td>
<td>Distance to father</td>
<td>Sons</td>
<tr>
<tr><td>NIXMm</td><td>N1</td><td>0.0225224</td><td>-</td></tr><tr><td>NIXh3</td><td>N1</td><td>0.0561161</td><td>-</td></tr><tr><td>NIXrn</td><td>N2</td><td>0.0197031</td><td>-</td></tr><tr><td>NIXm</td><td>N3</td><td>0.0994395</td><td>-</td></tr><tr><td>NIXh</td><td>N3</td><td>0.0638182</td><td>-</td></tr><tr><td>N1</td><td>root!</td><td>-</td><td>NIXMm NIXh3 N2</td></tr><tr><td>N2</td><td>N1</td><td>0.0146158</td><td>NIXrn N3</td></tr><tr><td>N3</td><td>N2</td><td>0.783648</td><td>NIXm NIXh</td></tr>
</table>

|jpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<tr>
<tr class="text"><td>0</td><td>0.0202733</td><td>27</td><td>0.000975997</td><td>54</td><td>0.000741882</td><td>81</td><td>0.0469483</td></tr><tr class="text"><td>1</td><td>0.0185284</td><td>28</td><td>7.95646e-006</td><td>55</td><td>0.000462605</td><td>82</td><td>0.0239413</td></tr><tr class="text"><td>2</td><td>0.0155666</td><td>29</td><td>2.47015e-005</td><td>56</td><td>0.00088901</td><td>83</td><td>0.0109203</td></tr><tr class="text"><td>3</td><td>0.0375775</td><td>30</td><td>0.0375775</td><td>57</td><td>0.00442</td><td>84</td><td>0.000163275</td></tr><tr class="text"><td>4</td><td>0.00030853</td><td>31</td><td>0.00704066</td><td>58</td><td>1.68968e-005</td><td>85</td><td>0.0195498</td></tr><tr class="text"><td>5</td><td>5.30978e-005</td><td>32</td><td>7.47067e-006</td><td>59</td><td>0.0109203</td><td>86</td><td>0.0144354</td></tr><tr class="text"><td>6</td><td>5.60797e-007</td><td>33</td><td>0.00144328</td><td>60</td><td>4.47274e-006</td><td>87</td><td>0.00428393</td></tr><tr class="text"><td>7</td><td>0.0117275</td><td>34</td><td>0.00309408</td><td>61</td><td>0.0224882</td><td>88</td><td>0.0185284</td></tr><tr class="text"><td>8</td><td>1.14307e-005</td><td>35</td><td>3.8607e-006</td><td>62</td><td>0.000824152</td><td>89</td><td>0.000625625</td></tr><tr class="text"><td>9</td><td>0.0159245</td><td>36</td><td>0.024009</td><td>63</td><td>0.0202733</td><td>90</td><td>0.00104718</td></tr><tr class="text"><td>10</td><td>0.0166649</td><td>37</td><td>0.0009179</td><td>64</td><td>0.0202733</td><td>91</td><td>0.000122076</td></tr><tr class="text"><td>11</td><td>1.60078e-005</td><td>38</td><td>0.000322545</td><td>65</td><td>0.0185284</td><td>92</td><td>0.00201443</td></tr><tr class="text"><td>12</td><td>0.00371798</td><td>39</td><td>0.052318</td><td>66</td><td>2.64657e-005</td><td>93</td><td>0.00442</td></tr><tr class="text"><td>13</td><td>0.0109203</td><td>40</td><td>0.0276989</td><td>67</td><td>9.04559e-005</td><td>94</td><td>1.08434e-005</td></tr><tr class="text"><td>14</td><td>0.00454267</td><td>41</td><td>0.000350537</td><td>68</td><td>0.000890541</td><td>95</td><td>1.86799e-006</td></tr><tr class="text"><td>15</td><td>6.36957e-006</td><td>42</td><td>0.0202733</td><td>69</td><td>0.000557693</td><td>96</td><td>0.000539514</td></tr><tr class="text"><td>16</td><td>0.018514</td><td>43</td><td>0.002392</td><td>70</td><td>1.10523e-005</td><td>97</td><td>0.0239413</td></tr><tr class="text"><td>17</td><td>0.0469483</td><td>44</td><td>0.0140227</td><td>71</td><td>0.0038335</td><td>98</td><td>0.00523597</td></tr><tr class="text"><td>18</td><td>0.0375775</td><td>45</td><td>0.00441014</td><td>72</td><td>0.000994813</td><td>99</td><td>0.000350906</td></tr><tr class="text"><td>19</td><td>0.0469483</td><td>46</td><td>0.0245096</td><td>73</td><td>0.0469483</td><td>100</td><td>0.000114797</td></tr><tr class="text"><td>20</td><td>1.41501e-007</td><td>47</td><td>0.000536866</td><td>74</td><td>0.0375775</td><td>101</td><td>0.000890541</td></tr><tr class="text"><td>21</td><td>2.28226e-005</td><td>48</td><td>2.18948e-005</td><td>75</td><td>0.0469483</td><td>102</td><td>0.0245096</td></tr><tr class="text"><td>22</td><td>0.00117634</td><td>49</td><td>7.38691e-007</td><td>76</td><td>0.0140227</td><td>103</td><td>0.00441014</td></tr><tr class="text"><td>23</td><td>0.0202733</td><td>50</td><td>0.0195498</td><td>77</td><td>0.0155666</td><td>104</td><td>0.024009</td></tr><tr class="text"><td>24</td><td>0.0276989</td><td>51</td><td>0.0193248</td><td>78</td><td>0.0469483</td><td>105</td><td>0.0208619</td></tr><tr class="text"><td>25</td><td>1.86201e-005</td><td>52</td><td>0.000238026</td><td>79</td><td>0.000906378</td><td>106</td><td>0.00454267</td></tr><tr class="text"><td>26</td><td>0.000543065</td><td>53</td><td>0.0375775</td><td>80</td><td>0.0166649</td><td>107</td><td>0.000484787</td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-700.83</td></tr>
</table>

|jrof_output=
<align id="nix" folder="jrof"></align>

|mpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<tr>
<tr class="text"><td>0</td><td>0.0202962</td><td>27</td><td>0.000978563</td><td>54</td><td>0.000742743</td><td>81</td><td>0.0469547</td></tr><tr class="text"><td>1</td><td>0.0185373</td><td>28</td><td>1.50001e-005</td><td>55</td><td>0.000463535</td><td>82</td><td>0.023948</td></tr><tr class="text"><td>2</td><td>0.0155725</td><td>29</td><td>4.76717e-005</td><td>56</td><td>0.000890824</td><td>83</td><td>0.0109203</td></tr><tr class="text"><td>3</td><td>0.037579</td><td>30</td><td>0.037579</td><td>57</td><td>0.0044369</td><td>84</td><td>0.000163341</td></tr><tr class="text"><td>4</td><td>0.000309381</td><td>31</td><td>0.00706652</td><td>58</td><td>2.97644e-005</td><td>85</td><td>0.0466031</td></tr><tr class="text"><td>5</td><td>5.3114e-005</td><td>32</td><td>1.28732e-005</td><td>59</td><td>0.0109203</td><td>86</td><td>0.0369186</td></tr><tr class="text"><td>6</td><td>8.93113e-007</td><td>33</td><td>0.00144739</td><td>60</td><td>4.5053e-006</td><td>87</td><td>0.00429769</td></tr><tr class="text"><td>7</td><td>0.01173</td><td>34</td><td>0.00309743</td><td>61</td><td>0.0224983</td><td>88</td><td>0.0185373</td></tr><tr class="text"><td>8</td><td>2.33001e-005</td><td>35</td><td>6.82112e-006</td><td>62</td><td>0.000824988</td><td>89</td><td>0.000626462</td></tr><tr class="text"><td>9</td><td>0.0159398</td><td>36</td><td>0.0240098</td><td>63</td><td>0.0202962</td><td>90</td><td>0.00339208</td></tr><tr class="text"><td>10</td><td>0.0166744</td><td>37</td><td>0.000918566</td><td>64</td><td>0.0202962</td><td>91</td><td>0.00012801</td></tr><tr class="text"><td>11</td><td>1.60643e-005</td><td>38</td><td>0.000323241</td><td>65</td><td>0.0185373</td><td>92</td><td>0.00201622</td></tr><tr class="text"><td>12</td><td>0.00372211</td><td>39</td><td>0.0852464</td><td>66</td><td>3.49186e-005</td><td>93</td><td>0.0044369</td></tr><tr class="text"><td>13</td><td>0.0109203</td><td>40</td><td>0.053023</td><td>67</td><td>0.000137674</td><td>94</td><td>2.12701e-005</td></tr><tr class="text"><td>14</td><td>0.00455163</td><td>41</td><td>0.000350905</td><td>68</td><td>0.000893508</td><td>95</td><td>1.879e-006</td></tr><tr class="text"><td>15</td><td>8.97627e-006</td><td>42</td><td>0.0202962</td><td>69</td><td>0.000558238</td><td>96</td><td>0.000540384</td></tr><tr class="text"><td>16</td><td>0.0185191</td><td>43</td><td>0.00239681</td><td>70</td><td>1.1168e-005</td><td>97</td><td>0.023948</td></tr><tr class="text"><td>17</td><td>0.0469547</td><td>44</td><td>0.0140241</td><td>71</td><td>0.00383708</td><td>98</td><td>0.00525373</td></tr><tr class="text"><td>18</td><td>0.037579</td><td>45</td><td>0.0044191</td><td>72</td><td>0.000995167</td><td>99</td><td>0.000351299</td></tr><tr class="text"><td>19</td><td>0.0469547</td><td>46</td><td>0.0245212</td><td>73</td><td>0.0469547</td><td>100</td><td>0.000114917</td></tr><tr class="text"><td>20</td><td>2.80898e-007</td><td>47</td><td>0.000537363</td><td>74</td><td>0.037579</td><td>101</td><td>0.000893508</td></tr><tr class="text"><td>21</td><td>2.30876e-005</td><td>48</td><td>2.59912e-005</td><td>75</td><td>0.0469547</td><td>102</td><td>0.0245212</td></tr><tr class="text"><td>22</td><td>0.0011784</td><td>49</td><td>1.80935e-006</td><td>76</td><td>0.0140241</td><td>103</td><td>0.0044191</td></tr><tr class="text"><td>23</td><td>0.0202962</td><td>50</td><td>0.0466031</td><td>77</td><td>0.0155725</td><td>104</td><td>0.0240098</td></tr><tr class="text"><td>24</td><td>0.053023</td><td>51</td><td>0.0503953</td><td>78</td><td>0.0469547</td><td>105</td><td>0.0208631</td></tr><tr class="text"><td>25</td><td>2.80854e-005</td><td>52</td><td>0.000553225</td><td>79</td><td>0.000907227</td><td>106</td><td>0.00455163</td></tr><tr class="text"><td>26</td><td>0.000544716</td><td>53</td><td>0.037579</td><td>80</td><td>0.0166744</td><td>107</td><td>0.000485274</td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-685.191</td></tr>
</table>

|mrof_output=
<align id="nix" folder="mrof"></align>

|sequence_logo=
[[Image:Logo_nix.png|500px|center]]

|hmms=
<pre>
>AP_nix profile HMM generated consensus sequence
VDTGtqyNlISaaCldRLGLkkrVKskkheGdklslPrtLKvVeQlElllITvGservd
CsAaVVDdnekelsLGLQTLlSLKCiINlDkehrvlrlKadkeElPFle
</pre>

|pairwise_alignment=
<pre>
Domain 1 of 1, from 1 to 88: score 28.2, E = 3.3e-09

DTG_ILG template ->vDTGAsvlsviskecklaqklgltrkkafdpSSYvCivtllsysqPs
vDTG++ ++is+ c +++lg
AP_nix 1 VDTGTQY-NLISAAC--LDRLG-----------------------L- 20

sktsttaqdtirgagGqskiyvSklktsgqirkn..llslvtikitkGnv
+k+ + + + G+ k +++++ k+ ++l+l+ i + G
AP_nix 21 KKRVK-----SKKHEGD-KL------SLPRTLKVveQLELLLITV--G-- 54

TevenrslpsdgvflvvtdpedqksrydvILGrldfLrqlnsvhidl<-
+++ ++ vv+d e ++ LG+ + L l++ i l
AP_nix 55 ----SERVDCS--AAVVDDNE-----KELSLGL-QTLLSLKCI-INL 88
</pre>
}}