CAARD:Osvaldo - Revision history

imported>Gydbwiki: New page: {{CAARD |pin_output= (Osvaldo:0.539548,Woot:0.784602,(Ulysses:0.951997,Circe:0.884199)N2:0.116174); |fin_output= <...
2009-05-08T11:49:12Z
New page: {{CAARD |pin_output= (Osvaldo:0.539548,Woot:0.784602,(Ulysses:0.951997,Circe:0.884199)N2:0.116174); |fin_output= <table class="tabdata"> <tr class="grey"> <td>Name</td> <td>Father</td> <...
New page
{{CAARD
|pin_output=
(Osvaldo:0.539548,Woot:0.784602,(Ulysses:0.951997,Circe:0.884199)N2:0.116174);

|fin_output=
<table class="tabdata">
<tr class="grey">
<td>Name</td>
<td>Father</td>
<td>Distance to father</td>
<td>Sons</td>
</tr>
<tr><td>Osvaldo</td><td>N1</td><td>0.539548</td><td>-</td></tr><tr><td>Woot</td><td>N1</td><td>0.784602</td><td>-</td></tr><tr><td>Ulysses</td><td>N2</td><td>0.951997</td><td>-</td></tr><tr><td>Circe</td><td>N2</td><td>0.884199</td><td>-</td></tr><tr><td>N1</td><td>root</td><td>-</td><td>Osvaldo Woot N2</td></tr><tr><td>N2</td><td>N1</td><td>0.116174</td><td>Ulysses Circe</td></tr>
</table>

|jpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
</tr>
<tr class="text"><td>0</td><td>6.38835e-005</td><td>26</td><td>0.00210045</td><td>52</td><td>2.70309e-007</td><td>78</td><td>9.6582e-006</td></tr><tr class="text"><td>1</td><td>0.0023797</td><td>27</td><td>1.03345e-005</td><td>53</td><td>7.96031e-008</td><td>79</td><td>8.19153e-005</td></tr><tr class="text"><td>2</td><td>0.000354121</td><td>28</td><td>2.52451e-005</td><td>54</td><td>6.24469e-005</td><td>80</td><td>1.83302e-006</td></tr><tr class="text"><td>3</td><td>0.00953299</td><td>29</td><td>6.34333e-007</td><td>55</td><td>0.000854223</td><td>81</td><td>9.63664e-006</td></tr><tr class="text"><td>4</td><td>0.000437991</td><td>30</td><td>1.1538e-006</td><td>56</td><td>0.0172886</td><td>82</td><td>1.76599e-005</td></tr><tr class="text"><td>5</td><td>1.06819e-005</td><td>31</td><td>1.54142e-005</td><td>57</td><td>0.0150888</td><td>83</td><td>8.38261e-007</td></tr><tr class="text"><td>6</td><td>1.61515e-006</td><td>32</td><td>3.92257e-006</td><td>58</td><td>2.18945e-005</td><td>84</td><td>1.78623e-006</td></tr><tr class="text"><td>7</td><td>0.000978108</td><td>33</td><td>0.000610633</td><td>59</td><td>0.000275988</td><td>85</td><td>3.31788e-005</td></tr><tr class="text"><td>8</td><td>1.05209e-006</td><td>34</td><td>0.0188969</td><td>60</td><td>5.26161e-006</td><td>86</td><td>3.60613e-006</td></tr><tr class="text"><td>9</td><td>0.000466986</td><td>35</td><td>1.27428e-005</td><td>61</td><td>3.66838e-006</td><td>87</td><td>4.03496e-006</td></tr><tr class="text"><td>10</td><td>0.000696864</td><td>36</td><td>3.45382e-007</td><td>62</td><td>0.000164983</td><td>88</td><td>7.92777e-007</td></tr><tr class="text"><td>11</td><td>6.05514e-005</td><td>37</td><td>2.60106e-006</td><td>63</td><td>4.06809e-006</td><td>89</td><td>0.0119681</td></tr><tr class="text"><td>12</td><td>9.23008e-006</td><td>38</td><td>4.31271e-005</td><td>64</td><td>1.40584e-006</td><td>90</td><td>0.00953299</td></tr><tr class="text"><td>13</td><td>0.00221601</td><td>39</td><td>2.9558e-006</td><td>65</td><td>3.3051e-006</td><td>91</td><td>6.07395e-007</td></tr><tr class="text"><td>14</td><td>1.41029e-006</td><td>40</td><td>0.00191219</td><td>66</td><td>2.13816e-006</td><td>92</td><td>0.0023797</td></tr><tr class="text"><td>15</td><td>1.96043e-007</td><td>41</td><td>9.02629e-006</td><td>67</td><td>1.84451e-005</td><td>93</td><td>3.17622e-007</td></tr><tr class="text"><td>16</td><td>9.90071e-005</td><td>42</td><td>0.0171471</td><td>68</td><td>0.000884911</td><td>94</td><td>0.000114144</td></tr><tr class="text"><td>17</td><td>0.0251626</td><td>43</td><td>9.82949e-006</td><td>69</td><td>0.0150888</td><td>95</td><td>1.93093e-007</td></tr><tr class="text"><td>18</td><td>0.0119681</td><td>44</td><td>1.15808e-007</td><td>70</td><td>0.025644</td><td>96</td><td>5.20809e-006</td></tr><tr class="text"><td>19</td><td>3.69258e-006</td><td>45</td><td>3.62039e-006</td><td>71</td><td>0.0187838</td><td>97</td><td>2.7953e-008</td></tr><tr class="text"><td>20</td><td>1.09397e-005</td><td>46</td><td>0.0001786</td><td>72</td><td>0.025644</td><td>98</td><td>7.72173e-005</td></tr><tr class="text"><td>21</td><td>0.000716668</td><td>47</td><td>3.49775e-005</td><td>73</td><td>0.0217892</td><td>99</td><td>1.99612e-005</td></tr><tr class="text"><td>22</td><td>3.59712e-007</td><td>48</td><td>0.000113629</td><td>74</td><td>2.85709e-007</td><td>100</td><td>1.50504e-006</td></tr><tr class="text"><td>23</td><td>0.000249906</td><td>49</td><td>7.10232e-006</td><td>75</td><td>1.21387e-006</td><td>101</td><td>1.0596e-008</td></tr><tr class="text"><td>24</td><td>1.61077e-008</td><td>50</td><td>2.10223e-006</td><td>76</td><td>0.000139723</td><td>102</td><td>0.000125863</td></tr><tr class="text"><td>25</td><td>1.61305e-005</td><td>51</td><td>1.21054e-006</td><td>77</td><td>1.44954e-005</td><td>103</td><td>3.45242e-005</td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-1084.06</td></tr>
</table>

|jrof_output=
<align id="osvaldo" folder="jrof"></align>

|mpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
</tr>
<tr class="text"><td>0</td><td>0.000212012</td><td>26</td><td>0.00476742</td><td>52</td><td>5.42476e-007</td><td>78</td><td>5.33744e-005</td></tr><tr class="text"><td>1</td><td>0.00244121</td><td>27</td><td>5.78801e-005</td><td>53</td><td>5.48693e-007</td><td>79</td><td>0.000357736</td></tr><tr class="text"><td>2</td><td>0.000395807</td><td>28</td><td>9.26706e-005</td><td>54</td><td>0.00012425</td><td>80</td><td>2.10075e-006</td></tr><tr class="text"><td>3</td><td>0.00954675</td><td>29</td><td>1.89013e-006</td><td>55</td><td>0.000995906</td><td>81</td><td>2.38773e-005</td></tr><tr class="text"><td>4</td><td>0.000495857</td><td>30</td><td>4.3183e-006</td><td>56</td><td>0.058565</td><td>82</td><td>6.43551e-005</td></tr><tr class="text"><td>5</td><td>1.99486e-005</td><td>31</td><td>4.06309e-005</td><td>57</td><td>0.040752</td><td>83</td><td>4.29485e-006</td></tr><tr class="text"><td>6</td><td>4.30916e-006</td><td>32</td><td>2.66641e-005</td><td>58</td><td>3.22459e-005</td><td>84</td><td>3.17468e-006</td></tr><tr class="text"><td>7</td><td>0.00101967</td><td>33</td><td>0.00328228</td><td>59</td><td>0.000490331</td><td>85</td><td>0.00011094</td></tr><tr class="text"><td>8</td><td>2.4731e-006</td><td>34</td><td>0.051691</td><td>60</td><td>1.18047e-005</td><td>86</td><td>6.07591e-006</td></tr><tr class="text"><td>9</td><td>0.000536418</td><td>35</td><td>4.62778e-005</td><td>61</td><td>4.63027e-006</td><td>87</td><td>5.83355e-006</td></tr><tr class="text"><td>10</td><td>0.00108977</td><td>36</td><td>1.40815e-006</td><td>62</td><td>0.000261745</td><td>88</td><td>1.71686e-006</td></tr><tr class="text"><td>11</td><td>0.000154882</td><td>37</td><td>7.03487e-006</td><td>63</td><td>4.90705e-006</td><td>89</td><td>0.0120418</td></tr><tr class="text"><td>12</td><td>1.87138e-005</td><td>38</td><td>4.55547e-005</td><td>64</td><td>2.55912e-006</td><td>90</td><td>0.00954675</td></tr><tr class="text"><td>13</td><td>0.00262301</td><td>39</td><td>5.08916e-006</td><td>65</td><td>1.35244e-005</td><td>91</td><td>2.45132e-006</td></tr><tr class="text"><td>14</td><td>2.47417e-006</td><td>40</td><td>0.00196574</td><td>66</td><td>7.27919e-006</td><td>92</td><td>0.00244121</td></tr><tr class="text"><td>15</td><td>7.83229e-007</td><td>41</td><td>1.08075e-005</td><td>67</td><td>3.90966e-005</td><td>93</td><td>3.73539e-007</td></tr><tr class="text"><td>16</td><td>0.000138113</td><td>42</td><td>0.0173238</td><td>68</td><td>0.00292819</td><td>94</td><td>0.00011694</td></tr><tr class="text"><td>17</td><td>0.06183</td><td>43</td><td>1.35766e-005</td><td>69</td><td>0.040752</td><td>95</td><td>8.46518e-007</td></tr><tr class="text"><td>18</td><td>0.0120418</td><td>44</td><td>7.94778e-007</td><td>70</td><td>0.058676</td><td>96</td><td>9.37867e-006</td></tr><tr class="text"><td>19</td><td>5.75025e-006</td><td>45</td><td>6.29069e-006</td><td>71</td><td>0.068765</td><td>97</td><td>1.23877e-007</td></tr><tr class="text"><td>20</td><td>2.19538e-005</td><td>46</td><td>0.000523866</td><td>72</td><td>0.058676</td><td>98</td><td>0.000156668</td></tr><tr class="text"><td>21</td><td>0.00291952</td><td>47</td><td>7.4824e-005</td><td>73</td><td>0.040126</td><td>99</td><td>3.66765e-005</td></tr><tr class="text"><td>22</td><td>2.03558e-006</td><td>48</td><td>0.000146631</td><td>74</td><td>1.17621e-006</td><td>100</td><td>3.9861e-006</td></tr><tr class="text"><td>23</td><td>0.000257553</td><td>49</td><td>1.11903e-005</td><td>75</td><td>4.34923e-006</td><td>101</td><td>5.33114e-008</td></tr><tr class="text"><td>24</td><td>8.38816e-008</td><td>50</td><td>5.16133e-006</td><td>76</td><td>0.000168386</td><td>102</td><td>0.000157264</td></tr><tr class="text"><td>25</td><td>5.07155e-005</td><td>51</td><td>4.49546e-006</td><td>77</td><td>2.41623e-005</td><td>103</td><td>4.39289e-005</td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-1001.92</td></tr>
</table>

|mrof_output=
<align id="osvaldo" folder="mrof"></align>

|sequence_logo=
[[Image:Logo_osvaldo.png|500px|center]]

|hmms=
<pre>
>AP_osvaldo profile HMM generated consensus sequence
lDTGAsvSlISgeLakrLiektGfeptfasmtriRgAnGqcsevgtqlypkirfgsrqy
ldvvlvmcpnpviddlvLGiDfLagmgtaidf
</pre>

|pairwise_alignment=
<pre>
Domain 1 of 1, from 1 to 91: score 64.7, E = 3.3e-20

DTG_ILG template ->vDTGAsvlsviskecklaqklgltrkkafdpSSYvCivtllsysqPs
+DTGAsv s+is e la++l ++++ +P
AP_osvaldo 1 LDTGASV-SLISGE--LAKRLIEKTG-----------------FEP- 26

sktsttaqdtirgagGqskiyvSklktsgqirknllslvtikitkGnvTe
+ +s+t+ irga+Gq ++ +g+ ++ ki++G
AP_osvaldo 27 TFASMTR---IRGANGQ-CS------EVGT-------QLYPKIRFG---- 55

venrslpsdgvflvvtdpedqks.rydvILGrldfLrqlnsvhidl<-
+r ++ d +++v++p+ + d++LG+ dfL +++ id+
AP_osvaldo 56 --SRQYL-D--VVLVMCPN---PvIDDLVLGI-DFLAGMGTA-IDF 91
</pre>
}}

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