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CAARD:Pepsins A1a d2 - Revision history
2026-06-09T14:58:30Z
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imported>Gydbwiki at 10:45, 8 May 2009
2009-05-08T10:45:45Z
<p></p>
<p><b>New page</b></p><div>{{CAARD<br />
|pin_output=<br />
((CatDchi2:0.124412,CatDonc2:0.082390)N2:0.053454,(CatDceg2:0.248584,(NapAmo2:0.368014,((CatDdro2:0.191392,CatDschi2:0.321620) N6:0.074849,(((Renrat2:0.220135,Rencal2:0.227798)N9:0.224064,(Eimpeim2:0.451561,Plasmep1pl:0.675691)N10:0.047604)N8:0.085498, ((Sccpepcan2:0.426127,(Gastmac2:0.427370,(Mucorhi2:0.784918,((SAP7can2:0.674817,Cparapcan2:0.609072)N16:0.193456, ((Memapsin1h:0.347342,Memapsin2h:0.251921)N18:0.495260,(Sypepsyn2:0.560354,(Enpepcry2:0.352425,Ppeppen2:0.254676)N20:0.205481) N19:0.158248)N17:0.068820)N15:0.012393)N14:0.116440)N13:0.028146)N12:0.089438,(CatExen2:0.270432,(PepArin2:0.227019, (Pepgal2:0.337171,PepFequ2:0.414174)N23:0.021412)N22:0.070832)N21:0.044379)N11:0.027323)N7:0.061125)N5:0.043160)N4:0.007450) N3:0.032229,(CatDgal2:0.208863,(CatDhum2:0.146380,CatDhyn2:0.119802)N25:0.028346)N24:0.007137);<br />
<br />
|fin_output=<br />
<table class="tabdata"><br />
<tr class="grey"><br />
<td>Name</td><br />
<td>Father</td><br />
<td>Distance to father</td><br />
<td>Sons</td><br />
</tr> <br />
<tr><td>CatDchi2</td><td>N2</td><td>0.124412</td><td>-</td></tr><tr><td>CatDonc2</td><td>N2</td><td>0.0823897</td><td>-</td></tr><tr><td>CatDceg2</td><td>N3</td><td>0.248584</td><td>-</td></tr><tr><td>NapAmo2</td><td>N4</td><td>0.368014</td><td>-</td></tr><tr><td>CatDdro2</td><td>N6</td><td>0.191392</td><td>-</td></tr><tr><td>CatDschi2</td><td>N6</td><td>0.32162</td><td>-</td></tr><tr><td>Renrat2</td><td>N9</td><td>0.220135</td><td>-</td></tr><tr><td>Rencal2</td><td>N9</td><td>0.227798</td><td>-</td></tr><tr><td>Eimpeim2</td><td>N10</td><td>0.451561</td><td>-</td></tr><tr><td>Plasmep1pl</td><td>N10</td><td>0.675691</td><td>-</td></tr><tr><td>Sccpepcan2</td><td>N12</td><td>0.426127</td><td>-</td></tr><tr><td>Gastmac2</td><td>N13</td><td>0.42737</td><td>-</td></tr><tr><td>Mucorhi2</td><td>N14</td><td>0.784918</td><td>-</td></tr><tr><td>SAP7can2</td><td>N16</td><td>0.674817</td><td>-</td></tr><tr><td>Cparapcan2</td><td>N16</td><td>0.609072</td><td>-</td></tr><tr><td>Memapsin1h</td><td>N18</td><td>0.347342</td><td>-</td></tr><tr><td>Memapsin2h</td><td>N18</td><td>0.251921</td><td>-</td></tr><tr><td>Sypepsyn2</td><td>N19</td><td>0.560354</td><td>-</td></tr><tr><td>Enpepcry2</td><td>N20</td><td>0.352425</td><td>-</td></tr><tr><td>Ppeppen2</td><td>N20</td><td>0.254676</td><td>-</td></tr><tr><td>CatExen2</td><td>N21</td><td>0.270432</td><td>-</td></tr><tr><td>PepArin2</td><td>N22</td><td>0.227019</td><td>-</td></tr><tr><td>Pepgal2</td><td>N23</td><td>0.337171</td><td>-</td></tr><tr><td>PepFequ2</td><td>N23</td><td>0.414174</td><td>-</td></tr><tr><td>CatDgal2</td><td>N24</td><td>0.208863</td><td>-</td></tr><tr><td>CatDhum2</td><td>N25</td><td>0.14638</td><td>-</td></tr><tr><td>CatDhyn2</td><td>N25</td><td>0.119802</td><td>-</td></tr><tr><td>N1</td><td>root!</td><td>-</td><td>N2 N3 N24</td></tr><tr><td>N2</td><td>N1</td><td>0.0534545</td><td>CatDchi2 CatDonc2</td></tr><tr><td>N3</td><td>N1</td><td>0.0322288</td><td>CatDceg2 N4</td></tr><tr><td>N4</td><td>N3</td><td>0.00745046</td><td>NapAmo2 N5</td></tr><tr><td>N5</td><td>N4</td><td>0.0431602</td><td>N6 N7</td></tr><tr><td>N6</td><td>N5</td><td>0.0748491</td><td>CatDdro2 CatDschi2</td></tr><tr><td>N7</td><td>N5</td><td>0.0611249</td><td>N8 N11</td></tr><tr><td>N8</td><td>N7</td><td>0.0854978</td><td>N9 N10</td></tr><tr><td>N9</td><td>N8</td><td>0.224064</td><td>Renrat2 Rencal2</td></tr><tr><td>N10</td><td>N8</td><td>0.0476035</td><td>Eimpeim2 Plasmep1pl</td></tr><tr><td>N11</td><td>N7</td><td>0.0273227</td><td>N12 N21</td></tr><tr><td>N12</td><td>N11</td><td>0.0894381</td><td>Sccpepcan2 N13</td></tr><tr><td>N13</td><td>N12</td><td>0.028146</td><td>Gastmac2 N14</td></tr><tr><td>N14</td><td>N13</td><td>0.11644</td><td>Mucorhi2 N15</td></tr><tr><td>N15</td><td>N14</td><td>0.0123925</td><td>N16 N17</td></tr><tr><td>N16</td><td>N15</td><td>0.193456</td><td>SAP7can2 Cparapcan2</td></tr><tr><td>N17</td><td>N15</td><td>0.0688203</td><td>N18 N19</td></tr><tr><td>N18</td><td>N17</td><td>0.49526</td><td>Memapsin1h Memapsin2h</td></tr><tr><td>N19</td><td>N17</td><td>0.158248</td><td>Sypepsyn2 N20</td></tr><tr><td>N20</td><td>N19</td><td>0.205481</td><td>Enpepcry2 Ppeppen2</td></tr><tr><td>N21</td><td>N11</td><td>0.0443787</td><td>CatExen2 N22</td></tr><tr><td>N22</td><td>N21</td><td>0.0708323</td><td>PepArin2 N23</td></tr><tr><td>N23</td><td>N22</td><td>0.021412</td><td>Pepgal2 PepFequ2</td></tr><tr><td>N24</td><td>N1</td><td>0.00713701</td><td>CatDgal2 N25</td></tr><tr><td>N25</td><td>N24</td><td>0.0283457</td><td>CatDhum2 CatDhyn2</td></tr><br />
</table> <br />
<br />
|jpf_output=<br />
<table class="tabdata"><br />
<tr class="grey"><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
</tr><br />
<tr class="text"><td>0</td><td>4.94094e-017</td><td>37</td><td>4.31185e-005</td><td>74</td><td>3.51464e-035</td><td>111</td><td>5.33244e-016</td></tr><tr class="text"><td>1</td><td>5.57941e-007</td><td>38</td><td>0.000120145</td><td>75</td><td>1.13017e-044</td><td>112</td><td>2.75464e-010</td></tr><tr class="text"><td>2</td><td>8.38563e-012</td><td>39</td><td>1.06592e-016</td><td>76</td><td>1.63349e-024</td><td>113</td><td>3.30375e-033</td></tr><tr class="text"><td>3</td><td>4.85499e-005</td><td>40</td><td>9.80352e-028</td><td>77</td><td>4.58615e-030</td><td>114</td><td>2.87831e-027</td></tr><tr class="text"><td>4</td><td>3.1369e-010</td><td>41</td><td>2.93883e-017</td><td>78</td><td>2.05358e-005</td><td>115</td><td>1.33256e-021</td></tr><tr class="text"><td>5</td><td>5.07064e-011</td><td>42</td><td>1.15015e-031</td><td>79</td><td>1.37119e-015</td><td>116</td><td>6.8233e-011</td></tr><tr class="text"><td>6</td><td>4.62614e-018</td><td>43</td><td>2.60512e-018</td><td>80</td><td>2.56005e-022</td><td>117</td><td>0.0013376</td></tr><tr class="text"><td>7</td><td>8.04008e-018</td><td>44</td><td>2.00401e-032</td><td>81</td><td>2.44994e-027</td><td>118</td><td>3.50171e-006</td></tr><tr class="text"><td>8</td><td>1.60938e-028</td><td>45</td><td>3.0187e-005</td><td>82</td><td>2.2556e-034</td><td>119</td><td>7.00563e-019</td></tr><tr class="text"><td>9</td><td>8.32192e-016</td><td>46</td><td>1.75929e-026</td><td>83</td><td>4.4112e-031</td><td>120</td><td>4.6136e-025</td></tr><tr class="text"><td>10</td><td>1.6694e-012</td><td>47</td><td>3.16716e-005</td><td>84</td><td>6.37787e-012</td><td>121</td><td>5.21357e-021</td></tr><tr class="text"><td>11</td><td>5.70622e-035</td><td>48</td><td>2.12209e-005</td><td>85</td><td>0.00064118</td><td>122</td><td>7.36872e-013</td></tr><tr class="text"><td>12</td><td>3.69498e-032</td><td>49</td><td>0.000557609</td><td>86</td><td>2.26245e-025</td><td>123</td><td>1.39168e-012</td></tr><tr class="text"><td>13</td><td>1.18278e-029</td><td>50</td><td>3.02287e-005</td><td>87</td><td>1.04723e-028</td><td>124</td><td>4.85499e-005</td></tr><tr class="text"><td>14</td><td>5.21348e-023</td><td>51</td><td>0.000168844</td><td>88</td><td>3.68479e-023</td><td>125</td><td>0.00306766</td></tr><tr class="text"><td>15</td><td>0.000372035</td><td>52</td><td>1.90925e-032</td><td>89</td><td>1.13955e-034</td><td>126</td><td>6.25802e-013</td></tr><tr class="text"><td>16</td><td>2.17025e-011</td><td>53</td><td>4.10285e-030</td><td>90</td><td>3.48358e-022</td><td>127</td><td>1.33452e-020</td></tr><tr class="text"><td>17</td><td>2.63053e-039</td><td>54</td><td>9.49964e-028</td><td>91</td><td>1.09003e-010</td><td>128</td><td>1.13531e-010</td></tr><tr class="text"><td>18</td><td>2.46171e-035</td><td>55</td><td>1.61502e-030</td><td>92</td><td>3.99096e-013</td><td>129</td><td>1.10816e-017</td></tr><tr class="text"><td>19</td><td>5.34598e-029</td><td>56</td><td>2.5761e-016</td><td>93</td><td>3.19415e-020</td><td>130</td><td>2.3978e-014</td></tr><tr class="text"><td>20</td><td>2.09935e-026</td><td>57</td><td>1.13087e-007</td><td>94</td><td>6.13553e-040</td><td>131</td><td>4.70512e-031</td></tr><tr class="text"><td>21</td><td>3.60249e-032</td><td>58</td><td>6.16256e-005</td><td>95</td><td>9.94857e-014</td><td>132</td><td>2.63348e-017</td></tr><tr class="text"><td>22</td><td>0.0003113</td><td>59</td><td>8.61014e-010</td><td>96</td><td>1.42392e-024</td><td>133</td><td>1.49577e-013</td></tr><tr class="text"><td>23</td><td>2.13297e-030</td><td>60</td><td>7.12792e-037</td><td>97</td><td>1.91691e-020</td><td>134</td><td>1.04752e-019</td></tr><tr class="text"><td>24</td><td>5.72777e-016</td><td>61</td><td>7.323e-021</td><td>98</td><td>4.54469e-028</td><td>135</td><td>2.0358e-016</td></tr><tr class="text"><td>25</td><td>4.4986e-015</td><td>62</td><td>2.33191e-026</td><td>99</td><td>3.0187e-005</td><td>136</td><td>2.39004e-009</td></tr><tr class="text"><td>26</td><td>1.86447e-013</td><td>63</td><td>6.04569e-017</td><td>100</td><td>3.32302e-025</td><td>137</td><td>6.84931e-010</td></tr><tr class="text"><td>27</td><td>5.62491e-005</td><td>64</td><td>2.44523e-039</td><td>101</td><td>1.59141e-014</td><td>138</td><td>0.0142937</td></tr><tr class="text"><td>28</td><td>0.000105914</td><td>65</td><td>2.7881e-025</td><td>102</td><td>2.16154e-012</td><td>139</td><td>9.47552e-025</td></tr><tr class="text"><td>29</td><td>7.82516e-013</td><td>66</td><td>1.57491e-023</td><td>103</td><td>2.4206e-016</td><td>140</td><td>6.0131e-028</td></tr><tr class="text"><td>30</td><td>1.68331e-037</td><td>67</td><td>1.69989e-009</td><td>104</td><td>1.0509e-030</td><td>141</td><td>1.56861e-026</td></tr><tr class="text"><td>31</td><td>5.36881e-027</td><td>68</td><td>1.84721e-005</td><td>105</td><td>7.44251e-021</td><td>142</td><td>3.18695e-022</td></tr><tr class="text"><td>32</td><td>2.78921e-027</td><td>69</td><td>6.2142e-009</td><td>106</td><td>1.12762e-022</td><td>143</td><td>5.13349e-025</td></tr><tr class="text"><td>33</td><td>8.26258e-034</td><td>70</td><td>1.69934e-006</td><td>107</td><td>3.46639e-012</td><td>144</td><td>7.15639e-013</td></tr><tr class="text"><td>34</td><td>4.63722e-030</td><td>71</td><td>1.69862e-005</td><td>108</td><td>1.08623e-006</td><td>145</td><td>6.7068e-009</td></tr><tr class="text"><td>35</td><td>5.85682e-006</td><td>72</td><td>1.04907e-007</td><td>109</td><td>1.45573e-005</td><td>146</td><td>1.55118e-013</td></tr><tr class="text"><td>36</td><td>3.13127e-005</td><td>73</td><td>1.00911e-007</td><td>110</td><td>8.21575e-024</td><td>&nbsp;</td><td>&nbsp;</td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-5979.9</td></tr><br />
</table><br />
<br />
<br />
|jrof_output=<br />
<align id="pepsins_a1a_d2" folder="jrof"></align><br />
<br />
|mpf_output= <br />
<table class="tabdata"><br />
<tr class="grey"><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
</tr><br />
<tr class="text"><td>0</td><td>1.43403e-016</td><td>37</td><td>0.000209369</td><td>74</td><td>1.66248e-033</td><td>111</td><td>2.55966e-015</td></tr><tr class="text"><td>1</td><td>5.69315e-007</td><td>38</td><td>0.0011179</td><td>75</td><td>2.15894e-042</td><td>112</td><td>5.86543e-009</td></tr><tr class="text"><td>2</td><td>1.01213e-011</td><td>39</td><td>5.273e-016</td><td>76</td><td>1.27158e-023</td><td>113</td><td>6.3741e-032</td></tr><tr class="text"><td>3</td><td>4.86247e-005</td><td>40</td><td>1.0718e-025</td><td>77</td><td>1.05031e-029</td><td>114</td><td>9.42056e-027</td></tr><tr class="text"><td>4</td><td>3.52034e-010</td><td>41</td><td>7.42972e-017</td><td>78</td><td>0.000486728</td><td>115</td><td>2.596e-020</td></tr><tr class="text"><td>5</td><td>7.13239e-011</td><td>42</td><td>2.93695e-031</td><td>79</td><td>4.61461e-015</td><td>116</td><td>4.6494e-010</td></tr><tr class="text"><td>6</td><td>5.62984e-018</td><td>43</td><td>1.37577e-017</td><td>80</td><td>1.1481e-021</td><td>117</td><td>0.0307901</td></tr><tr class="text"><td>7</td><td>1.13039e-016</td><td>44</td><td>2.52127e-031</td><td>81</td><td>7.60626e-026</td><td>118</td><td>0.000120002</td></tr><tr class="text"><td>8</td><td>5.3983e-027</td><td>45</td><td>3.01897e-005</td><td>82</td><td>1.21371e-032</td><td>119</td><td>7.5057e-018</td></tr><tr class="text"><td>9</td><td>1.07048e-015</td><td>46</td><td>3.026e-026</td><td>83</td><td>2.78912e-029</td><td>120</td><td>1.29241e-023</td></tr><tr class="text"><td>10</td><td>2.26856e-012</td><td>47</td><td>0.000652008</td><td>84</td><td>1.3444e-011</td><td>121</td><td>2.66532e-020</td></tr><tr class="text"><td>11</td><td>3.87047e-033</td><td>48</td><td>0.00130118</td><td>85</td><td>0.00479164</td><td>122</td><td>1.60138e-012</td></tr><tr class="text"><td>12</td><td>2.90212e-031</td><td>49</td><td>0.00387182</td><td>86</td><td>7.19269e-024</td><td>123</td><td>4.63714e-012</td></tr><tr class="text"><td>13</td><td>2.02869e-028</td><td>50</td><td>0.000773129</td><td>87</td><td>5.70947e-028</td><td>124</td><td>4.86247e-005</td></tr><tr class="text"><td>14</td><td>5.82542e-022</td><td>51</td><td>0.00315376</td><td>88</td><td>2.17718e-022</td><td>125</td><td>0.051544</td></tr><tr class="text"><td>15</td><td>0.068765</td><td>52</td><td>9.97463e-030</td><td>89</td><td>2.38317e-033</td><td>126</td><td>7.62804e-013</td></tr><tr class="text"><td>16</td><td>1.46816e-009</td><td>53</td><td>1.19872e-028</td><td>90</td><td>2.36317e-021</td><td>127</td><td>1.00179e-019</td></tr><tr class="text"><td>17</td><td>1.20194e-037</td><td>54</td><td>5.06038e-027</td><td>91</td><td>1.91207e-009</td><td>128</td><td>1.94684e-010</td></tr><tr class="text"><td>18</td><td>4.52193e-033</td><td>55</td><td>3.39022e-029</td><td>92</td><td>2.28514e-011</td><td>129</td><td>1.83492e-017</td></tr><tr class="text"><td>19</td><td>9.06587e-028</td><td>56</td><td>3.46636e-016</td><td>93</td><td>9.53966e-019</td><td>130</td><td>5.55369e-014</td></tr><tr class="text"><td>20</td><td>2.71969e-025</td><td>57</td><td>6.74451e-006</td><td>94</td><td>8.78935e-038</td><td>131</td><td>4.36333e-030</td></tr><tr class="text"><td>21</td><td>5.57062e-031</td><td>58</td><td>0.000711655</td><td>95</td><td>2.95601e-013</td><td>132</td><td>2.52605e-016</td></tr><tr class="text"><td>22</td><td>0.00780915</td><td>59</td><td>1.13836e-009</td><td>96</td><td>4.52399e-023</td><td>133</td><td>1.87238e-013</td></tr><tr class="text"><td>23</td><td>3.47568e-029</td><td>60</td><td>2.30963e-034</td><td>97</td><td>5.83155e-019</td><td>134</td><td>9.8498e-019</td></tr><tr class="text"><td>24</td><td>2.01026e-014</td><td>61</td><td>4.70893e-020</td><td>98</td><td>4.71229e-027</td><td>135</td><td>3.48592e-016</td></tr><tr class="text"><td>25</td><td>1.22459e-014</td><td>62</td><td>1.62484e-025</td><td>99</td><td>3.01897e-005</td><td>136</td><td>4.35359e-009</td></tr><tr class="text"><td>26</td><td>2.68186e-013</td><td>63</td><td>1.13445e-016</td><td>100</td><td>1.2267e-023</td><td>137</td><td>9.26567e-010</td></tr><tr class="text"><td>27</td><td>0.00110595</td><td>64</td><td>1.20312e-037</td><td>101</td><td>2.40957e-013</td><td>138</td><td>0.073152</td></tr><tr class="text"><td>28</td><td>0.000351207</td><td>65</td><td>1.2696e-024</td><td>102</td><td>1.27481e-011</td><td>139</td><td>8.19025e-024</td></tr><tr class="text"><td>29</td><td>2.73261e-011</td><td>66</td><td>3.06999e-022</td><td>103</td><td>1.05068e-015</td><td>140</td><td>7.5968e-027</td></tr><tr class="text"><td>30</td><td>3.75556e-036</td><td>67</td><td>2.07178e-009</td><td>104</td><td>2.42764e-029</td><td>141</td><td>3.38358e-025</td></tr><tr class="text"><td>31</td><td>2.22656e-025</td><td>68</td><td>0.000535229</td><td>105</td><td>1.33533e-019</td><td>142</td><td>6.15789e-022</td></tr><tr class="text"><td>32</td><td>2.10844e-026</td><td>69</td><td>3.86228e-007</td><td>106</td><td>2.77548e-021</td><td>143</td><td>5.17223e-024</td></tr><tr class="text"><td>33</td><td>8.973e-032</td><td>70</td><td>5.46968e-005</td><td>107</td><td>3.49388e-011</td><td>144</td><td>4.99939e-012</td></tr><tr class="text"><td>34</td><td>1.19482e-028</td><td>71</td><td>0.000633539</td><td>108</td><td>0.000133871</td><td>145</td><td>1.17126e-008</td></tr><tr class="text"><td>35</td><td>5.48105e-005</td><td>72</td><td>1.03907e-006</td><td>109</td><td>0.000437352</td><td>146</td><td>2.55118e-013</td></tr><tr class="text"><td>36</td><td>0.000343088</td><td>73</td><td>1.43079e-006</td><td>110</td><td>1.83318e-023</td><td>&nbsp;</td><td>&nbsp;</td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-5641.19</td></tr><br />
</table><br />
<br />
<br />
|mrof_output=<br />
<align id="pepsins_a1a_d2" folder="mrof"></align><br />
<br />
|sequence_logo=<br />
[[Image:Logo_pepsins_a1a_d2.png|500px|center]]<br />
<br />
|hmms=<br />
<pre><br />
>AP_pepsins_a1a_d2 profile HMM generated consensus sequence<br />
vDTGTSLitgPssvvqalqkaiGAtessdgeYvvnCskintLPtitFtlgGkqytLpps<br />
dYvlqvsGiClsGfggmDipplwILGDvFlrkyYtVFDrdnnrVGF<br />
</pre><br />
<br />
|pairwise_alignment=<br />
<pre><br />
Domain 1 of 1, from 1 to 98: score 40.9, E = 4.8e-13<br />
<br />
DTG_ILG template *->vDTGAsvlsviskecklaqklgltrkkafdp..SS...Y.v.C..iv<br />
vDTG+s+++ +s + +a++++ +++++SS+++Y v+C++i+<br />
AP_pepsins 1 VDTGTSLITGPSSVV-QALQKA------IGAteSSdgeYvVnCskIN 40 <br />
<br />
tllsysqPssktsttaqdtirgagGqskiyvSklktsgqirknllslvti<br />
++P+ ++ + + gG k+y + +++ ++ +<br />
AP_pepsins 41 -----TLPT--IT------F-TLGG--KQY----TLPPS-------DYVL 63 <br />
<br />
kitkGnvTevenrslpsdgvflvv.tdpedqksrydvILGrldfLrqlns<br />
++ G + + f ++p + +ILG+ fLr++++<br />
AP_pepsins 64 QVS-G------ICLSG----F-GGmDIP------PLWILGD-VFLRKYYT 94 <br />
<br />
vhidl<-*<br />
v +d+ <br />
AP_pepsins 95 V-FDR 98 <br />
</pre><br />
}}</div>
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