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CAARD:Pepsins A1b d1 - Revision history
2026-06-09T14:58:42Z
Revision history for this page on the wiki
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imported>Gydbwiki: New page: {{CAARD |pin_output= (Nepheneshi:0.372257,NM_114992.:1.022165,(CND41_1:0.479291,(AtASP38_1:0.555408,Nucelin_1:0.620928)N3:0.048556)N2:0.043466); |fin_output= <table class="tabdata"> <tr ...
2009-05-08T10:51:12Z
<p>New page: {{CAARD |pin_output= (Nepheneshi:0.372257,NM_114992.:1.022165,(CND41_1:0.479291,(AtASP38_1:0.555408,Nucelin_1:0.620928)N3:0.048556)N2:0.043466); |fin_output= <table class="tabdata"> <tr ...</p>
<p><b>New page</b></p><div>{{CAARD<br />
|pin_output=<br />
(Nepheneshi:0.372257,NM_114992.:1.022165,(CND41_1:0.479291,(AtASP38_1:0.555408,Nucelin_1:0.620928)N3:0.048556)N2:0.043466); <br />
<br />
|fin_output=<br />
<table class="tabdata"><br />
<tr class="grey"><br />
<td>Name</td><br />
<td>Father</td><br />
<td>Distance to father</td><br />
<td>Sons</td><br />
</tr> <br />
<tr><td>Nepheneshi</td><td>N1</td><td>0.372257</td><td>-</td></tr><tr><td>NM_114992.</td><td>N1</td><td>1.02217</td><td>-</td></tr><tr><td>CND41_1</td><td>N2</td><td>0.479291</td><td>-</td></tr><tr><td>AtASP38_1</td><td>N3</td><td>0.555408</td><td>-</td></tr><tr><td>Nucelin_1</td><td>N3</td><td>0.620928</td><td>-</td></tr><tr><td>N1</td><td>root!</td><td>-</td><td>Nepheneshi NM_114992. N2</td></tr><tr><td>N2</td><td>N1</td><td>0.0434657</td><td>CND41_1 N3</td></tr><tr><td>N3</td><td>N2</td><td>0.0485564</td><td>AtASP38_1 Nucelin_1</td></tr><br />
</table><br />
<br />
<br />
|jpf_output=<br />
<table class="tabdata"><br />
<tr class="grey"><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
</tr><br />
<tr class="text"><td>0</td><td>8.0937e-007</td><td>40</td><td>1.83718e-008</td><td>80</td><td>1.30364e-006</td><td>120</td><td> 0.00141425</td></tr><tr class="text"><td>1</td><td>7.96508e-006</td><td>41</td><td>5.22093e-009</td><td>81</td><td>1.05024e-005</td><td>121</td><td> 0.0102317</td></tr><tr class="text"><td>2</td><td>0.00256133</td><td>42</td><td>4.48241e-005</td><td>82</td><td>2.19433e-007</td><td>122</td><td> 0.00339716</td></tr><tr class="text"><td>3</td><td>0.0011929</td><td>43</td><td>0.000404681</td><td>83</td><td>5.74433e-007</td><td>123</td><td> 3.26869e-005</td></tr><tr class="text"><td>4</td><td>0.0102317</td><td>44</td><td>0.000866462</td><td>84</td><td>8.41431e-005</td><td>124</td><td> 1.11534e-009</td></tr><tr class="text"><td>5</td><td>0.00107583</td><td>45</td><td>2.17095e-005</td><td>85</td><td>1.9603e-006</td><td>125</td><td> 3.43243e-006</td></tr><tr class="text"><td>6</td><td>1.94063e-005</td><td>46</td><td>3.91443e-005</td><td>86</td><td> 4.72459e-005</td><td>126</td><td> 5.96334e-008</td></tr><tr class="text"><td>7</td><td>0.0127188</td><td>47</td><td>1.06869e-005</td><td>87</td><td> 1.06673e-006</td><td>127</td><td> 3.58198e-008</td></tr><tr class="text"><td>8</td><td>4.04918e-007</td><td>48</td><td>2.24262e-005</td><td>88</td><td> 2.36328e-007</td><td>128</td><td>0.000193919</td></tr><tr class="text"><td>9</td><td>0.00535302</td><td>49</td><td>5.02363e-006</td><td>89</td><td> 3.45778e-008</td><td>129</td><td>1.46051e-007</td></tr><tr class="text"><td>10</td><td>6.95352e-006</td><td>50</td><td>0.00339716</td><td>90</td><td> 0.0001584</td><td>130</td><td>1.76118e-009</td></tr><tr class="text"><td>11</td><td>2.21254e-005</td><td>51</td><td>2.0962e-007</td><td>91</td><td> 9.79644e-007</td><td>131</td><td>1.53111e-007</td></tr><tr class="text"><td>12</td><td>0.00339716</td><td>52</td><td>6.00608e-007</td><td>92</td><td> 2.11605e-006</td><td>132</td><td>1.64533e-006</td></tr><tr class="text"><td>13</td><td>4.24714e-007</td><td>53</td><td>2.33951e-007</td><td>93</td><td> 4.09457e-005</td><td>133</td><td>7.37841e-007</td></tr><tr class="text"><td>14</td><td>0.0211041</td><td>54</td><td>9.84382e-009</td><td>94</td><td> 0.000377894</td><td>134</td><td>1.41788e-005</td></tr><tr class="text"><td>15</td><td>1.5393e-006</td><td>55</td><td>0.00339716</td><td>95</td><td> 1.77281e-006</td><td>135</td><td>0.00157819</td></tr><tr class="text"><td>16</td><td>1.57468e-005</td><td>56</td><td>1.22688e-008</td><td>96</td><td> 4.32346e-005</td><td>136</td><td>6.1302e-006</td></tr><tr class="text"><td>17</td><td>4.05652e-006</td><td>57</td><td>3.73132e-007</td><td>97</td><td> 2.12379e-008</td><td>137</td><td>3.06715e-007</td></tr><tr class="text"><td>18</td><td>5.14417e-008</td><td>58</td><td>1.81482e-007</td><td>98</td><td> 8.31931e-005</td><td>138</td><td>2.64686e-006</td></tr><tr class="text"><td>19</td><td>3.02574e-005</td><td>59</td><td>2.83274e-007</td><td>99</td><td> 4.32465e-009</td><td>139</td><td>0.000233869</td></tr><tr class="text"><td>20</td><td>7.67795e-009</td><td>60</td><td>2.92569e-005</td><td>100</td><td> 4.83222e-006</td><td>140</td><td>0.00100563</td></tr><tr class="text"><td>21</td><td>0.0182668</td><td>61</td><td>1.27261e-006</td><td>101</td><td> 2.06245e-005</td><td>141</td><td>2.12538e-007</td></tr><tr class="text"><td>22</td><td>0.0185134</td><td>62</td><td>6.3242e-007</td><td>102</td><td> 2.61833e-006</td><td>142</td><td>0.000233869</td></tr><tr class="text"><td>23</td><td>0.0463971</td><td>63</td><td>9.95861e-007</td><td>103</td><td> 5.0156e-006</td><td>143</td><td>1.67091e-006</td></tr><tr class="text"><td>24</td><td>0.0236971</td><td>64</td><td>3.99297e-008</td><td>104</td><td> 2.64804e-006</td><td>144</td><td>5.63293e-006</td></tr><tr class="text"><td>25</td><td>0.0244633</td><td>65</td><td>0.034129</td><td>105</td><td> 9.12698e-006</td><td>145</td><td>1.96141e-007</td></tr><tr class="text"><td>26</td><td>0.0207248</td><td>66</td><td>0.000904001</td><td>106</td><td> 5.88637e-007</td><td>146</td><td>0.00112721</td></tr><tr class="text"><td>27</td><td>0.0367895</td><td>67</td><td>2.55153e-007</td><td>107</td><td> 8.8342e-007</td><td>147</td><td>2.79908e-007</td></tr><tr class="text"><td>28</td><td>0.0463971</td><td>68</td><td>6.07288e-007</td><td>108</td><td> 0.000368383</td><td>148</td><td>7.12754e-005</td></tr><tr class="text"><td>29</td><td>0.0168121</td><td>69</td><td>4.13812e-005</td><td>109</td><td> 0.00124509</td><td>149</td><td>4.63107e-005</td></tr><tr class="text"><td>30</td><td>0.0136403</td><td>70</td><td>8.21809e-009</td><td>110</td><td> 2.39132e-005</td><td>150</td><td>5.89455e-005</td></tr><tr class="text"><td>31</td><td>1.55616e-005</td><td>71</td><td>0.0281867</td><td>111</td><td> 1.56931e-007</td><td>151</td><td>8.33417e-007</td></tr><tr class="text"><td>32</td><td>1.13773e-005</td><td>72</td><td>0.034129</td><td>112</td><td> 1.99203e-006</td><td>152</td><td>0.000169736</td></tr><tr class="text"><td>33</td><td>0.000119982</td><td>73</td><td>0.0509014</td><td>113</td><td> 9.03888e-006</td><td>153</td><td> 0.00031041</td></tr><tr class="text"><td>34</td><td>2.59878e-009</td><td>74</td><td>0.0509014</td><td>114</td><td> 6.91843e-007</td><td>154</td><td> 0.0015403</td></tr><tr class="text"><td>35</td><td>5.44181e-008</td><td>75</td><td>0.0509014</td><td>115</td><td> 5.1244e-006</td><td>155</td><td> 0.0138565</td></tr><tr class="text"><td>36</td><td>3.45672e-006</td><td>76</td><td>0.0509014</td><td>116</td><td> 1.65247e-007</td><td>156</td><td> 0.0138565</td></tr><tr class="text"><td>37</td><td>0.000111897</td><td>77</td><td>0.0509014</td><td>117</td><td> 9.73438e-006</td><td>&nbsp;</td><td>&nbsp;</td></tr><tr class="text"><td>38</td><td>9.9788e-007</td><td>78</td><td>0.0509014</td><td>118</td><td> 6.25912e-006</td><td>&nbsp;</td><td>&nbsp;</td></tr><tr class="text"><td>39</td><td>0.00552696</td><td>79</td><td>0.0509014</td><td>119</td><td> 2.28911e-006</td><td>&nbsp;</td><td>&nbsp;</td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-1698.83</td></tr><br />
</table><br />
<br />
<br />
|jrof_output=<br />
<align id="pepsins_a1b_d1" folder="jrof"></align><br />
<br />
|mpf_output=<br />
<table class="tabdata"><br />
<tr class="grey"><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
</tr><br />
<tr class="text"><td>0</td><td>1.44819e-006</td><td>40</td><td>8.84727e-008</td><td>80</td><td>3.81103e-006</td><td>120</td><td>0.00141725</td></tr><tr class="text"><td>1</td><td>1.48728e-005</td><td>41</td><td>1.94639e-008</td><td>81</td><td>1.27706e-005</td><td>121</td><td>0.0102345</td></tr><tr class="text"><td>2</td><td>0.00257298</td><td>42</td><td>4.62054e-005</td><td>82</td><td>2.46344e-007</td><td>122</td><td>0.00339722</td></tr><tr class="text"><td>3</td><td>0.00119715</td><td>43</td><td>0.000450611</td><td>83</td><td>6.30665e-007</td><td>123</td><td>3.28885e-005</td></tr><tr class="text"><td>4</td><td>0.0102345</td><td>44</td><td>0.000902559</td><td>84</td><td>8.41818e-005</td><td>124</td><td>3.91382e-009</td></tr><tr class="text"><td>5</td><td>0.00108226</td><td>45</td><td>2.52308e-005</td><td>85</td><td>3.05718e-006</td><td>125</td><td>4.83463e-006</td></tr><tr class="text"><td>6</td><td>2.24004e-005</td><td>46</td><td>5.47497e-005</td><td>86</td><td>4.74605e-005</td><td>126</td><td>8.87774e-008</td></tr><tr class="text"><td>7</td><td>0.0127329</td><td>47</td><td>3.57707e-005</td><td>87</td><td>1.63538e-006</td><td>127</td><td>1.15113e-007</td></tr><tr class="text"><td>8</td><td>6.68257e-007</td><td>48</td><td>4.57591e-005</td><td>88</td><td>3.41268e-007</td><td>128</td><td>0.000195067</td></tr><tr class="text"><td>9</td><td>0.00535303</td><td>49</td><td>5.07502e-006</td><td>89</td><td>1.35614e-007</td><td>129</td><td>3.7541e-007</td></tr><tr class="text"><td>10</td><td>8.78311e-006</td><td>50</td><td>0.00339722</td><td>90</td><td>0.000158647</td><td>130</td><td>7.10525e-009</td></tr><tr class="text"><td>11</td><td>2.2503e-005</td><td>51</td><td>7.36257e-007</td><td>91</td><td>1.83686e-006</td><td>131</td><td>1.98691e-007</td></tr><tr class="text"><td>12</td><td>0.00339722</td><td>52</td><td>9.29883e-007</td><td>92</td><td>2.17329e-006</td><td>132</td><td>2.10034e-006</td></tr><tr class="text"><td>13</td><td>9.07418e-007</td><td>53</td><td>2.69018e-007</td><td>93</td><td>4.17917e-005</td><td>133</td><td>2.15888e-006</td></tr><tr class="text"><td>14</td><td>0.032102</td><td>54</td><td>2.19084e-008</td><td>94</td><td>0.000384071</td><td>134</td><td>6.17061e-005</td></tr><tr class="text"><td>15</td><td>1.55537e-006</td><td>55</td><td>0.00339722</td><td>95</td><td>2.67291e-006</td><td>135</td><td>0.00205962</td></tr><tr class="text"><td>16</td><td>1.57867e-005</td><td>56</td><td>2.06831e-008</td><td>96</td><td>7.1603e-005</td><td>136</td><td>2.76055e-005</td></tr><tr class="text"><td>17</td><td>6.10247e-006</td><td>57</td><td>5.41705e-007</td><td>97</td><td>3.31862e-008</td><td>137</td><td>4.68006e-007</td></tr><tr class="text"><td>18</td><td>8.20032e-008</td><td>58</td><td>2.97737e-007</td><td>98</td><td>8.34521e-005</td><td>138</td><td>3.96523e-006</td></tr><tr class="text"><td>19</td><td>3.03171e-005</td><td>59</td><td>9.86034e-007</td><td>99</td><td>7.9424e-009</td><td>139</td><td>0.000234571</td></tr><tr class="text"><td>20</td><td>2.99516e-008</td><td>60</td><td>4.23627e-005</td><td>100</td><td>6.13905e-006</td><td>140</td><td>0.00101938</td></tr><tr class="text"><td>21</td><td>0.051691</td><td>61</td><td>2.32953e-006</td><td>101</td><td>2.2375e-005</td><td>141</td><td>1.15528e-006</td></tr><tr class="text"><td>22</td><td>0.051544</td><td>62</td><td>3.56516e-006</td><td>102</td><td>3.8739e-006</td><td>142</td><td>0.000234571</td></tr><tr class="text"><td>23</td><td>0.091904</td><td>63</td><td>3.09907e-006</td><td>103</td><td>1.00313e-005</td><td>143</td><td>2.12989e-006</td></tr><tr class="text"><td>24</td><td>0.058676</td><td>64</td><td>4.07409e-007</td><td>104</td><td>3.01664e-006</td><td>144</td><td>5.71771e-006</td></tr><tr class="text"><td>25</td><td>0.06183</td><td>65</td><td>0.066005</td><td>105</td><td>9.29703e-006</td><td>145</td><td>2.0461e-007</td></tr><tr class="text"><td>26</td><td>0.066005</td><td>66</td><td>0.000905927</td><td>106</td><td>1.02901e-006</td><td>146</td><td>0.00113441</td></tr><tr class="text"><td>27</td><td>0.073152</td><td>67</td><td>4.87752e-007</td><td>107</td><td>1.37986e-006</td><td>147</td><td>6.56039e-007</td></tr><tr class="text"><td>28</td><td>0.091904</td><td>68</td><td>7.48004e-007</td><td>108</td><td>0.0011114</td><td>148</td><td>7.95396e-005</td></tr><tr class="text"><td>29</td><td>0.068765</td><td>69</td><td>4.1521e-005</td><td>109</td><td>0.00364993</td><td>149</td><td>6.35825e-005</td></tr><tr class="text"><td>30</td><td>0.040752</td><td>70</td><td>2.396e-008</td><td>110</td><td>2.45418e-005</td><td>150</td><td>6.3369e-005</td></tr><tr class="text"><td>31</td><td>2.67965e-005</td><td>71</td><td>0.058565</td><td>111</td><td>3.16862e-007</td><td>151</td><td>4.61356e-006</td></tr><tr class="text"><td>32</td><td>1.35652e-005</td><td>72</td><td>0.066005</td><td>112</td><td>2.85513e-006</td><td>152</td><td>0.000178385</td></tr><tr class="text"><td>33</td><td>0.000120108</td><td>73</td><td>0.073152</td><td>113</td><td>1.80595e-005</td><td>153</td><td>0.000312563</td></tr><tr class="text"><td>34</td><td>8.81003e-009</td><td>74</td><td>0.073152</td><td>114</td><td>1.33902e-006</td><td>154</td><td>0.0017739</td></tr><tr class="text"><td>35</td><td>1.28789e-007</td><td>75</td><td>0.073152</td><td>115</td><td>2.81094e-005</td><td>155</td><td>1</td></tr><tr class="text"><td>36</td><td>3.89873e-006</td><td>76</td><td>0.073152</td><td>116</td><td>4.17211e-007</td><td>156</td><td>1</td></tr><tr class="text"><td>37</td><td>0.000118442</td><td>77</td><td>0.073152</td><td>117</td><td>1.03608e-005</td><td>&nbsp;</td><td>&nbsp;</td></tr><tr class="text"><td>38</td><td>1.92756e-006</td><td>78</td><td>0.073152</td><td>118</td><td>7.18212e-006</td><td>&nbsp;</td><td>&nbsp;</td></tr><tr class="text"><td>39</td><td>0.00552829</td><td>79</td><td>0.073152</td><td>119</td><td>4.26786e-006</td><td>&nbsp;</td><td>&nbsp;</td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-1614.21</td></tr><br />
</table><br />
<br />
<br />
|mrof_output=<br />
<align id="pepsins_a1b_d1" folder="mrof"></align><br />
<br />
|sequence_logo=<br />
[[Image:Logo_pepsins_a1b_d1.png|500px|center]]<br />
<br />
|hmms=<br />
<pre><br />
>AP_pepsins_a1b_d1 profile HMM generated consensus sequence<br />
iiDTGSDLtWLqCnpCSnCnsqPtpLFdPngSssYStvpCssqrCqdlsrdftPssCan<br />
nnqChYtlsYgdGSsSqGvLatdtftfGnssvdsNIaFGCGennrGfnqgnptptaGLl<br />
Gmgrgslslpsql<br />
</pre><br />
<br />
|pairwise_alignment=<br />
<pre><br />
Domain 1 of 1, from 2 to 131: score 34.6, E = 3.7e-11<br />
<br />
DTG_ILG template *->vDTGAsvlsviskecklaqklgltrkk.a.fdp..SS.Y..v.C...<br />
+DTG++++++ +c + + +++++++ fdp++SS+Y++v+C+++<br />
AP_pepsins 2 IDTGSDLTWL---QC-NPC-SNCNSQPtPlFDPngSSsYstVpCssq 43 <br />
<br />
ivt.l..................lsysqPssktsttaqdtirgagGqski<br />
++++l+++ ++++ ++++ + +lsy+++ss ++++a+dt+ ++g+ <br />
AP_pepsins 44 RCQdLsrdftpsscannnqchytLSYGDGSSSQGVLATDTF-TFGN---- 88 <br />
<br />
yvSklktsgqirknllslvtikitkGnvTevenrslpsdgvflvvtdped<br />
+s+ +++ + G + + g f + +p <br />
AP_pepsins 89 ------SSV---------DSNIAF-G-------CGENNRG-FNQG-NPTP 113 <br />
<br />
qksrydvILGrldfLrqlnsvhidl<-*<br />
++LG+ ++ + + +l <br />
AP_pepsins 114 ----TAGLLGM-GRGSLSLP--SQL 131 <br />
</pre><br />
}}</div>
imported>Gydbwiki