CAARD:Reina - Revision history

imported>Gydbwiki: New page: {{CAARD |pin_output= (Reina:0.570903,Gimli:0.412249,(Gloin:0.760498,Ifg7:0.586966)N2:0.165333); |fin_output=

Name Father
2009-05-08T14:22:49Z

New page: {{CAARD |pin_output= (Reina:0.570903,Gimli:0.412249,(Gloin:0.760498,Ifg7:0.586966)N2:0.165333); |fin_output= <table class="tabdata"> <tr class="grey"> <td>Name</td> <td>Father</td...

New page
{{CAARD
|pin_output=
(Reina:0.570903,Gimli:0.412249,(Gloin:0.760498,Ifg7:0.586966)N2:0.165333);

|fin_output=
<table class="tabdata">
<tr class="grey">
<td>Name</td>
<td>Father</td>
<td>Distance to father</td>
<td>Sons</td>
</tr>
<tr><td>Reina</td><td>N1</td><td>0.570903</td><td>-</td></tr><tr><td>Gimli</td><td>N1</td><td>0.412249</td><td>-</td></tr><tr><td>Gloin</td><td>N2</td><td>0.760498</td><td>-</td></tr><tr><td>Ifg7</td><td>N2</td><td>0.586966</td><td>-</td></tr><tr><td>N1</td><td>root!</td><td>-</td><td>Reina Gimli N2</td></tr><tr><td>N2</td><td>N1</td><td>0.165333</td><td>Gloin Ifg7</td></tr>
</table>

|jpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
</tr>
<tr class="text"><td>0</td><td>0.000235799</td><td>25</td><td>0.0302906</td><td>50</td><td>5.0643e-007</td><td>75</td><td>1.17796e-005</td></tr><tr class="text"><td>1</td><td>0.00460294</td><td>26</td><td>1.00785e-006</td><td>51</td><td>5.40004e-007</td><td>76</td><td>0.000538037</td></tr><tr class="text"><td>2</td><td>0.0024028</td><td>27</td><td>0.0147891</td><td>52</td><td>1.85048e-007</td><td>77</td><td>8.08168e-007</td></tr><tr class="text"><td>3</td><td>0.0152119</td><td>28</td><td>0.00265011</td><td>53</td><td>1.89494e-008</td><td>78</td><td>0.00460294</td></tr><tr class="text"><td>4</td><td>0.000677506</td><td>29</td><td>0.00019376</td><td>54</td><td>0.00826792</td><td>79</td><td>2.25499e-005</td></tr><tr class="text"><td>5</td><td>0.000523034</td><td>30</td><td>3.54695e-005</td><td>55</td><td>3.87171e-007</td><td>80</td><td>0.000439504</td></tr><tr class="text"><td>6</td><td>4.05632e-005</td><td>31</td><td>8.79597e-007</td><td>56</td><td>5.97464e-008</td><td>81</td><td>0.0188412</td></tr><tr class="text"><td>7</td><td>0.000410099</td><td>32</td><td>0.000520421</td><td>57</td><td>3.7813e-006</td><td>82</td><td>0.0152119</td></tr><tr class="text"><td>8</td><td>0.00858428</td><td>33</td><td>0.000152579</td><td>58</td><td>0.000317051</td><td>83</td><td>8.58479e-005</td></tr><tr class="text"><td>9</td><td>6.09975e-005</td><td>34</td><td>0.0135428</td><td>59</td><td>1.78494e-007</td><td>84</td><td>4.5467e-007</td></tr><tr class="text"><td>10</td><td>4.18045e-007</td><td>35</td><td>8.54883e-007</td><td>60</td><td>2.129e-007</td><td>85</td><td>0.00654592</td></tr><tr class="text"><td>11</td><td>3.18177e-007</td><td>36</td><td>0.00152389</td><td>61</td><td>0.0135662</td><td>86</td><td>0.000219216</td></tr><tr class="text"><td>12</td><td>4.03765e-007</td><td>37</td><td>0.00016696</td><td>62</td><td>2.01616e-006</td><td>87</td><td>0.000477717</td></tr><tr class="text"><td>13</td><td>1.39046e-005</td><td>38</td><td>9.01628e-006</td><td>63</td><td>0.000268255</td><td>88</td><td>2.94692e-006</td></tr><tr class="text"><td>14</td><td>3.29286e-005</td><td>39</td><td>0.0152119</td><td>64</td><td>0.0135428</td><td>89</td><td>2.39171e-006</td></tr><tr class="text"><td>15</td><td>1.16016e-006</td><td>40</td><td>7.78405e-008</td><td>65</td><td>2.30776e-006</td><td>90</td><td>1.10427e-005</td></tr><tr class="text"><td>16</td><td>0.00707594</td><td>41</td><td>1.47928e-006</td><td>66</td><td>4.41582e-005</td><td>91</td><td>6.43238e-006</td></tr><tr class="text"><td>17</td><td>0.0185384</td><td>42</td><td>0.000196459</td><td>67</td><td>0.000198134</td><td>92</td><td>1.37637e-005</td></tr><tr class="text"><td>18</td><td>2.6184e-005</td><td>43</td><td>1.54439e-008</td><td>68</td><td>8.07532e-005</td><td>93</td><td>0.0212374</td></tr><tr class="text"><td>19</td><td>0.00252786</td><td>44</td><td>1.48076e-006</td><td>69</td><td>1.00252e-005</td><td>94</td><td>1.82753e-007</td></tr><tr class="text"><td>20</td><td>0.0220053</td><td>45</td><td>1.64425e-007</td><td>70</td><td>0.0567913</td><td>95</td><td>1.4463e-005</td></tr><tr class="text"><td>21</td><td>1.48548e-005</td><td>46</td><td>2.59619e-006</td><td>71</td><td>4.05719e-007</td><td>96</td><td>8.9022e-009</td></tr><tr class="text"><td>22</td><td>3.06675e-007</td><td>47</td><td>4.69457e-006</td><td>72</td><td>0.000122069</td><td> </td><td> </td></tr><tr class="text"><td>23</td><td>2.32379e-005</td><td>48</td><td>7.93559e-005</td><td>73</td><td>0.000170413</td><td> </td><td> </td></tr><tr class="text"><td>24</td><td>0.000563793</td><td>49</td><td>0.000475973</td><td>74</td><td>0.000948396</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-971.37</td></tr>
</table>

|jrof_output=
<align id="reina" folder="jrof"></align>

|mpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
</tr>
<tr class="text"><td>0</td><td>0.000418545</td><td>25</td><td>0.0307787</td><td>50</td><td>2.31439e-006</td><td>75</td><td>2.18731e-005</td></tr><tr class="text"><td>1</td><td>0.00466852</td><td>26</td><td>6.88579e-006</td><td>51</td><td>6.13048e-007</td><td>76</td><td>0.000548574</td></tr><tr class="text"><td>2</td><td>0.00245086</td><td>27</td><td>0.0148979</td><td>52</td><td>2.77983e-007</td><td>77</td><td>2.54816e-006</td></tr><tr class="text"><td>3</td><td>0.0152261</td><td>28</td><td>0.00675388</td><td>53</td><td>6.30962e-008</td><td>78</td><td>0.00466852</td></tr><tr class="text"><td>4</td><td>0.000744091</td><td>29</td><td>0.000394105</td><td>54</td><td>0.022944</td><td>79</td><td>4.01323e-005</td></tr><tr class="text"><td>5</td><td>0.000567586</td><td>30</td><td>0.000146515</td><td>55</td><td>7.17037e-007</td><td>80</td><td>0.000809195</td></tr><tr class="text"><td>6</td><td>4.11878e-005</td><td>31</td><td>2.17723e-006</td><td>56</td><td>2.23898e-007</td><td>81</td><td>0.0189099</td></tr><tr class="text"><td>7</td><td>0.000429429</td><td>32</td><td>0.000642537</td><td>57</td><td>9.132e-006</td><td>82</td><td>0.0152261</td></tr><tr class="text"><td>8</td><td>0.00859653</td><td>33</td><td>0.000169669</td><td>58</td><td>0.001587</td><td>83</td><td>0.000129976</td></tr><tr class="text"><td>9</td><td>0.000142834</td><td>34</td><td>1</td><td>59</td><td>2.46525e-007</td><td>84</td><td>1.4284e-006</td></tr><tr class="text"><td>10</td><td>1.40503e-006</td><td>35</td><td>1.75539e-006</td><td>60</td><td>4.32441e-007</td><td>85</td><td>0.00654594</td></tr><tr class="text"><td>11</td><td>4.08198e-007</td><td>36</td><td>0.00177465</td><td>61</td><td>0.0181871</td><td>86</td><td>0.000223509</td></tr><tr class="text"><td>12</td><td>8.40232e-007</td><td>37</td><td>0.000179353</td><td>62</td><td>9.06092e-006</td><td>87</td><td>0.00210078</td></tr><tr class="text"><td>13</td><td>7.33067e-005</td><td>38</td><td>1.56054e-005</td><td>63</td><td>0.000273318</td><td>88</td><td>3.92113e-006</td></tr><tr class="text"><td>14</td><td>9.49143e-005</td><td>39</td><td>0.0152261</td><td>64</td><td>1</td><td>89</td><td>1.73388e-005</td></tr><tr class="text"><td>15</td><td>4.10811e-006</td><td>40</td><td>3.38385e-007</td><td>65</td><td>4.01988e-006</td><td>90</td><td>2.31988e-005</td></tr><tr class="text"><td>16</td><td>0.00713191</td><td>41</td><td>3.13393e-006</td><td>66</td><td>6.06272e-005</td><td>91</td><td>2.68584e-005</td></tr><tr class="text"><td>17</td><td>0.058565</td><td>42</td><td>0.000435888</td><td>67</td><td>0.000214719</td><td>92</td><td>2.72107e-005</td></tr><tr class="text"><td>18</td><td>7.61232e-005</td><td>43</td><td>3.54034e-008</td><td>68</td><td>8.25345e-005</td><td>93</td><td>0.051544</td></tr><tr class="text"><td>19</td><td>0.00655491</td><td>44</td><td>2.30186e-006</td><td>69</td><td>1.06297e-005</td><td>94</td><td>1.43401e-006</td></tr><tr class="text"><td>20</td><td>0.0222284</td><td>45</td><td>6.57436e-007</td><td>70</td><td>0.091904</td><td>95</td><td>2.26221e-005</td></tr><tr class="text"><td>21</td><td>6.47249e-005</td><td>46</td><td>5.13199e-006</td><td>71</td><td>2.51423e-006</td><td>96</td><td>1.1491e-007</td></tr><tr class="text"><td>22</td><td>4.0431e-007</td><td>47</td><td>1.39039e-005</td><td>72</td><td>0.000219128</td><td> </td><td> </td></tr><tr class="text"><td>23</td><td>3.67215e-005</td><td>48</td><td>0.000201232</td><td>73</td><td>0.000173429</td><td> </td><td> </td></tr><tr class="text"><td>24</td><td>0.00165667</td><td>49</td><td>0.00161491</td><td>74</td><td>0.00103166</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-898.397</td></tr>
</table>

|mrof_output=
<align id="reina" folder="mrof"></align>

|sequence_logo=
[[Image:Logo_reina.png|500px|center]]

|hmms=
<pre>
>AP_reina profile HMM generated consensus sequence
vDSGSTHNFispqvteKltGvqsfLyPsAnaqVkVAdGrslkvkgsvpqchklkvqgnT
tFvtDFmsiPLgGiDvvLGvhWLekhttpDmnw
</pre>

|pairwise_alignment=
<pre>
Domain 1 of 1, from 1 to 92: score 60.3, E = 7e-19

DTG_ILG template ->vDTGAsvlsviskecklaqklgltrkkafdpSSYvCivtllsysqPs
vD+G+++ ++is++ + +kl ++++ + Ps
AP_reina 1 VDSGSTH-NFISPQ--VTEKLTGVQSF----------------LYPS 28

sktsttaqdtirgagGqskiyvSklktsgqirknllslvtikitkGnvTe
++ + +++a+G+s + ++g+++++ ++k++ G
AP_reina 29 --ANAQ----VKVADGRSLK------VKGSVPQC----HKLKVQ-G---- 57

venrslpsdgvflvvtdpedqksrydvILGrldfLrqlnsvhidl<-
n+++++d f + +++ ++dv+LG ++L+++ ++ + +
AP_reina 58 --NTTFVTD--F-MSIPLG----GIDVVLGV-HWLEKHTTPDMNW 92
</pre>
}}