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CAARD:SASPase - Revision history
2026-06-09T14:56:33Z
Revision history for this page on the wiki
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https://gydb.org/index.php?title=CAARD:SASPase&diff=504&oldid=prev
imported>Gydbwiki: New page: {{CAARD |pin_output= (SASPase_Mo:0.162083,(SASPase_Ho:0.000000,SASPase_Pa:0.000000)N2:0.039731,(SASPase_Mu:0.049890,(SASPase_Bo:0.026389,SASPase_Ca:0.008329) N4:0.009664)N3:0.004968); |f...
2009-05-08T10:15:36Z
<p>New page: {{CAARD |pin_output= (SASPase_Mo:0.162083,(SASPase_Ho:0.000000,SASPase_Pa:0.000000)N2:0.039731,(SASPase_Mu:0.049890,(SASPase_Bo:0.026389,SASPase_Ca:0.008329) N4:0.009664)N3:0.004968); |f...</p>
<p><b>New page</b></p><div>{{CAARD<br />
|pin_output=<br />
(SASPase_Mo:0.162083,(SASPase_Ho:0.000000,SASPase_Pa:0.000000)N2:0.039731,(SASPase_Mu:0.049890,(SASPase_Bo:0.026389,SASPase_Ca:0.008329) N4:0.009664)N3:0.004968); <br />
<br />
|fin_output= <br />
<table class="tabdata"><br />
<tr class="grey"><br />
<td>Name</td><br />
<td>Father</td><br />
<td>Distance to father</td><br />
<td>Sons</td><br />
<tr> <br />
<tr><td>SASPase_Monodelphis_domestica</td><td>N1</td><td>0.162083</td><td>-</td></tr><tr><td>SASPase_Homo_sapiens</td><td>N2</td><td>0</td><td>-</td></tr><tr><td>SASPase_Pan_troglodytes</td><td>N2</td><td>0</td><td>-</td></tr><tr><td>SASPase_Mus_musculus</td><td>N3</td><td>0.0498901</td><td>-</td></tr><tr><td>SASPase_Bos_taurus</td><td>N4</td><td>0.0263886</td><td>-</td></tr><tr><td>SASPase_Canis familiaris</td><td>N4</td><td>0.00832901</td><td>-</td></tr><tr><td>N1</td><td>root!</td><td>-</td><td>SASPase_Mo N2 N3</td></tr><tr><td>N2</td><td>N1</td><td>0.0397305</td><td>SASPase_Ho SASPase_Pa</td></tr><tr><td>N3</td><td>N1</td><td>0.00496793</td><td>SASPase_Mu N4</td></tr><tr><td>N4</td><td>N3</td><td>0.00966427</td><td>SASPase_Bo SASPase_Ca</td></tr><br />
</table><br />
<br />
|jpf_output=<br />
<table class="tabdata"><br />
<tr class="grey"><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<tr><br />
<tr class="text"><td>0</td><td>0.0457152</td><td>22</td><td>0.00148054</td><td>44</td><td>0.0602493</td><td>66</td><td>0.0529372</td></tr><tr class="text"><td>1</td><td>0.0377861</td><td>23</td><td>0.0377861</td><td>45</td><td>1.63198e-005</td><td>67</td><td>0.044692</td></tr><tr class="text"><td>2</td><td>0.044692</td><td>24</td><td>0.0393332</td><td>46</td><td>0.01298</td><td>68</td><td>0.00242698</td></tr><tr class="text"><td>3</td><td>0.0602493</td><td>25</td><td>0.0752907</td><td>47</td><td>0.0377861</td><td>69</td><td>0.046703</td></tr><tr class="text"><td>4</td><td>0.0529372</td><td>26</td><td>0.000191977</td><td>48</td><td>0.0393332</td><td>70</td><td>0.046703</td></tr><tr class="text"><td>5</td><td>0.0298127</td><td>27</td><td>0.040926</td><td>49</td><td>1.39047e-009</td><td>71</td><td>0.0529372</td></tr><tr class="text"><td>6</td><td>0.0457152</td><td>28</td><td>0.0331559</td><td>50</td><td>0.00117269</td><td>72</td><td>0.0368726</td></tr><tr class="text"><td>7</td><td>0.044692</td><td>29</td><td>6.35817e-005</td><td>51</td><td>0.00210712</td><td>73</td><td>0.0368726</td></tr><tr class="text"><td>8</td><td>0.0457152</td><td>30</td><td>0.0290889</td><td>52</td><td>0.0752907</td><td>74</td><td>0.0602493</td></tr><tr class="text"><td>9</td><td>0.0457152</td><td>31</td><td>0.0457152</td><td>53</td><td>0.0602493</td><td>75</td><td>0.0393332</td></tr><tr class="text"><td>10</td><td>0.000155531</td><td>32</td><td>0.0457152</td><td>54</td><td>0.0448667</td><td>76</td><td>0.0377861</td></tr><tr class="text"><td>11</td><td>0.040926</td><td>33</td><td>0.0448667</td><td>55</td><td>9.66979e-007</td><td>77</td><td>0.0457152</td></tr><tr class="text"><td>12</td><td>3.24412e-008</td><td>34</td><td>0.0457152</td><td>56</td><td>0.000833189</td><td>78</td><td>0.0752907</td></tr><tr class="text"><td>13</td><td>0.0752907</td><td>35</td><td>0.0529372</td><td>57</td><td>0.00110034</td><td>79</td><td>0.0298127</td></tr><tr class="text"><td>14</td><td>0.01298</td><td>36</td><td>0.0290889</td><td>58</td><td>0.000833189</td><td>80</td><td>0.0377861</td></tr><tr class="text"><td>15</td><td>0.046703</td><td>37</td><td>0.0602493</td><td>59</td><td>0.0529372</td><td>81</td><td>0.0163232</td></tr><tr class="text"><td>16</td><td>0.000998968</td><td>38</td><td>0.0529372</td><td>60</td><td>5.17693e-007</td><td>82</td><td>0.000331506</td></tr><tr class="text"><td>17</td><td>0.00171922</td><td>39</td><td>0.046703</td><td>61</td><td>0.0331559</td><td>83</td><td>0.0529372</td></tr><tr class="text"><td>18</td><td>0.0393332</td><td>40</td><td>0.0167153</td><td>62</td><td>0.0752907</td><td>84</td><td>0.00011584</td></tr><tr class="text"><td>19</td><td>0.0377861</td><td>41</td><td>0.0448667</td><td>63</td><td>0.0457152</td><td>85</td><td>0.0752907</td></tr><tr class="text"><td>20</td><td>0.0602493</td><td>42</td><td>0.0368726</td><td>64</td><td>0.0529372</td><td>86</td><td>0.0377861</td></tr><tr class="text"><td>21</td><td>0.000470807</td><td>43</td><td>0.0752907</td><td>65</td><td>0.0290889</td><td>87</td><td>0.0331559</td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-402.473</td></tr><br />
</table><br />
<br />
|jrof_output=<br />
<align id="saspase" folder="jrof"></align><br />
<br />
|mpf_output= <br />
<table class="tabdata"><br />
<tr class="grey"><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<td>Position</td><br />
<td>Joint probability</td><br />
<tr><br />
<tr class="text"><td>0</td><td>0.0457156</td><td>22</td><td>0.00148087</td><td>44</td><td>0.0602493</td><td>66</td><td>0.0529374</td></tr><tr class="text"><td>1</td><td>0.0377862</td><td>23</td><td>0.0377862</td><td>45</td><td>1.71402e-005</td><td>67</td><td>0.0446921</td></tr><tr class="text"><td>2</td><td>0.0446921</td><td>24</td><td>0.0393333</td><td>46</td><td>0.01298</td><td>68</td><td>0.0024281</td></tr><tr class="text"><td>3</td><td>0.0602493</td><td>25</td><td>0.0752908</td><td>47</td><td>0.0377862</td><td>69</td><td>0.0467032</td></tr><tr class="text"><td>4</td><td>0.0529374</td><td>26</td><td>0.000192652</td><td>48</td><td>0.0393333</td><td>70</td><td>0.0467032</td></tr><tr class="text"><td>5</td><td>0.0298128</td><td>27</td><td>0.040926</td><td>49</td><td>3.60167e-009</td><td>71</td><td>0.0529374</td></tr><tr class="text"><td>6</td><td>0.0457156</td><td>28</td><td>0.0331559</td><td>50</td><td>0.00117401</td><td>72</td><td>0.0368728</td></tr><tr class="text"><td>7</td><td>0.0446921</td><td>29</td><td>6.35919e-005</td><td>51</td><td>0.00210802</td><td>73</td><td>0.0368728</td></tr><tr class="text"><td>8</td><td>0.0457156</td><td>30</td><td>0.029089</td><td>52</td><td>0.0752908</td><td>74</td><td>0.0602493</td></tr><tr class="text"><td>9</td><td>0.0457156</td><td>31</td><td>0.0457156</td><td>53</td><td>0.0602493</td><td>75</td><td>0.0393333</td></tr><tr class="text"><td>10</td><td>0.000155538</td><td>32</td><td>0.0457156</td><td>54</td><td>0.0448668</td><td>76</td><td>0.0377862</td></tr><tr class="text"><td>11</td><td>0.040926</td><td>33</td><td>0.0448668</td><td>55</td><td>9.6764e-007</td><td>77</td><td>0.0457156</td></tr><tr class="text"><td>12</td><td>8.18781e-008</td><td>34</td><td>0.0457156</td><td>56</td><td>0.000833307</td><td>78</td><td>0.0752908</td></tr><tr class="text"><td>13</td><td>0.0752908</td><td>35</td><td>0.0529374</td><td>57</td><td>0.00110081</td><td>79</td><td>0.0298128</td></tr><tr class="text"><td>14</td><td>0.01298</td><td>36</td><td>0.029089</td><td>58</td><td>0.000833307</td><td>80</td><td>0.0377862</td></tr><tr class="text"><td>15</td><td>0.0467032</td><td>37</td><td>0.0602493</td><td>59</td><td>0.0529374</td><td>81</td><td>0.0163232</td></tr><tr class="text"><td>16</td><td>0.000999219</td><td>38</td><td>0.0529374</td><td>60</td><td>5.19973e-007</td><td>82</td><td>0.000331538</td></tr><tr class="text"><td>17</td><td>0.00171966</td><td>39</td><td>0.0467032</td><td>61</td><td>0.0331559</td><td>83</td><td>0.0529374</td></tr><tr class="text"><td>18</td><td>0.0393333</td><td>40</td><td>0.0167153</td><td>62</td><td>0.0752908</td><td>84</td><td>0.000200982</td></tr><tr class="text"><td>19</td><td>0.0377862</td><td>41</td><td>0.0448668</td><td>63</td><td>0.0457156</td><td>85</td><td>0.0752908</td></tr><tr class="text"><td>20</td><td>0.0602493</td><td>42</td><td>0.0368728</td><td>64</td><td>0.0529374</td><td>86</td><td>0.0377862</td></tr><tr class="text"><td>21</td><td>0.000471383</td><td>43</td><td>0.0752908</td><td>65</td><td>0.029089</td><td>87</td><td>0.0331559</td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-399.981</td></tr><br />
</table><br />
<br />
|mrof_output=<br />
<align id="saspase" folder="mrof"></align><br />
<br />
|sequence_logo=<br />
[[Image:Logo_saspase.png|500px|center]]<br />
<br />
|hmms=<br />
<pre><br />
>AP_saspase profile HMM generated consensus sequence<br />
vDsGAqvsvvhPdLWEevtDGdlDtLrPFenvvKvAnGAEmKiLGvWDtkvsLGKlklk<br />
AeFLvAnAsaEEAiiGtDvLqDHnAvLDF<br />
</pre><br />
<br />
|pairwise_alignment=<br />
<pre><br />
Domain 1 of 1, from 1 to 88: score 55.6, E = 1.8e-17<br />
<br />
DTG_ILG template *->vDTGAsvlsviskecklaqklgltrkkafdpSSYvCivtllsysqPs<br />
vD+GA+v sv+++++++ + g ++ ++P <br />
AP_saspase 1 VDSGAQV-SVVHPDLWEEVTDGDLDT-----------------LRPF 29 <br />
<br />
sktsttaqdtirgagGqskiyvSklktsgqirknllslvtikitkGnvTe<br />
++ +++a+G ++ k++g + ++++++ G <br />
AP_saspase 30 --ENV-----VKVANGA-EM-----KILGVW------DTKVSL--G---- 54 <br />
<br />
venrslpsdgvflvvtdpedqksrydvILGrldfLrqlnsvhidl<-*<br />
+ +l+ + flv+ + ++ ++I+G d+L+++n+v d+ <br />
AP_saspase 55 --KLKLKAE--FLVA-NASA----EEAIIGT-DVLQDHNAV-LDF 88 <br />
</pre><br />
}}</div>
imported>Gydbwiki