CAARD:TF1-2 - Revision history

imported>Gydbwiki: New page: {{CAARD |pin_output= (N1:0.0,TF2:0.300000); |fin_output= <...
2009-05-08T13:38:30Z
New page: {{CAARD |pin_output= (N1:0.0,TF2:0.300000); |fin_output= <table class="tabdata"> <tr class="grey"> <td>Name</td> <td>Father</td> <td>Distance to father</td> <td>Sons</td> </tr> <...
New page
{{CAARD
|pin_output=
(N1:0.0,TF2:0.300000);

|fin_output=
<table class="tabdata">
<tr class="grey">
<td>Name</td>
<td>Father</td>
<td>Distance to father</td>
<td>Sons</td>
</tr>
<tr><td>TF2</td><td>N1</td><td>0.3</td><td>-</td></tr><tr><td>TF1</td><td>N1</td><td>0.3</td><td>-</td></tr><tr><td>N1</td><td>root!</td><td>-</td><td>TF2 TF1</td></tr>
</table>

|jpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
</tr>
<tr class="text"><td>0</td><td>0.0259827</td><td>21</td><td>0.0269084</td><td>42</td><td>0.0269084</td><td>63</td><td>0.0347441</td></tr><tr class="text"><td>1</td><td>0.028196</td><td>22</td><td>0.0283934</td><td>43</td><td>0.0011932</td><td>64</td><td>0.0275402</td></tr><tr class="text"><td>2</td><td>0.0269084</td><td>23</td><td>0.0330756</td><td>44</td><td>0.0347441</td><td>65</td><td>0.0297219</td></tr><tr class="text"><td>3</td><td>0.0498761</td><td>24</td><td>0.0118237</td><td>45</td><td>0.0621819</td><td>66</td><td>0.0117064</td></tr><tr class="text"><td>4</td><td>0.0372241</td><td>25</td><td>0.000631961</td><td>46</td><td>0.000193889</td><td>67</td><td>0.0330756</td></tr><tr class="text"><td>5</td><td>0.0220105</td><td>26</td><td>0.00124806</td><td>47</td><td>0.0259827</td><td>68</td><td>0.0372241</td></tr><tr class="text"><td>6</td><td>0.00230045</td><td>27</td><td>0.0297219</td><td>48</td><td>0.00210886</td><td>69</td><td>0.0372241</td></tr><tr class="text"><td>7</td><td>0.0201276</td><td>28</td><td>0.032548</td><td>49</td><td>0.0621819</td><td>70</td><td>0.0259827</td></tr><tr class="text"><td>8</td><td>0.00496762</td><td>29</td><td>0.0259827</td><td>50</td><td>0.0201276</td><td>71</td><td>0.0297219</td></tr><tr class="text"><td>9</td><td>0.0259827</td><td>30</td><td>0.0224481</td><td>51</td><td>0.0498761</td><td>72</td><td>0.0275402</td></tr><tr class="text"><td>10</td><td>0.0269084</td><td>31</td><td>0.0498761</td><td>52</td><td>0.0259827</td><td>73</td><td>0.0269084</td></tr><tr class="text"><td>11</td><td>0.0358474</td><td>32</td><td>0.0498761</td><td>53</td><td>0.0297219</td><td>74</td><td>0.0269084</td></tr><tr class="text"><td>12</td><td>0.0358474</td><td>33</td><td>0.032548</td><td>54</td><td>0.0259827</td><td>75</td><td>0.0621819</td></tr><tr class="text"><td>13</td><td>0.0269084</td><td>34</td><td>0.0224481</td><td>55</td><td>0.0347441</td><td>76</td><td>0.0224481</td></tr><tr class="text"><td>14</td><td>0.032548</td><td>35</td><td>0.0330756</td><td>56</td><td>0.0269084</td><td>77</td><td>0.028196</td></tr><tr class="text"><td>15</td><td>0.0283934</td><td>36</td><td>0.000934252</td><td>57</td><td>0.0358474</td><td>78</td><td>0.0201276</td></tr><tr class="text"><td>16</td><td>0.0372241</td><td>37</td><td>0.0347441</td><td>58</td><td>0.0275402</td><td>79</td><td>0.0201276</td></tr><tr class="text"><td>17</td><td>0.0117064</td><td>38</td><td>0.0259827</td><td>59</td><td>0.0621819</td><td>80</td><td>0.0259827</td></tr><tr class="text"><td>18</td><td>0.0347441</td><td>39</td><td>0.0201276</td><td>60</td><td>0.032548</td><td>81</td><td>0.0358474</td></tr><tr class="text"><td>19</td><td>0.0621819</td><td>40</td><td>0.0283934</td><td>61</td><td>0.032548</td><td>82</td><td>0.0259827</td></tr><tr class="text"><td>20</td><td>0.0330756</td><td>41</td><td>0.0347441</td><td>62</td><td>0.0347441</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-316.641</td></tr>
</table>

|jrof_output=
<align id="tf1_2" folder="jrof"></align>

|mpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
</tr>
<tr class="text"><td>0</td><td>0.0269992</td><td>21</td><td>0.0276271</td><td>42</td><td>0.0276271</td><td>63</td><td>0.0353273</td></tr><tr class="text"><td>1</td><td>0.028886</td><td>22</td><td>0.0288953</td><td>43</td><td>0.00263986</td><td>64</td><td>0.0277081</td></tr><tr class="text"><td>2</td><td>0.0276271</td><td>23</td><td>0.0332631</td><td>44</td><td>0.0353273</td><td>65</td><td>0.0307625</td></tr><tr class="text"><td>3</td><td>0.050169</td><td>24</td><td>0.0118267</td><td>45</td><td>0.0628339</td><td>66</td><td>0.0118167</td></tr><tr class="text"><td>4</td><td>0.0382672</td><td>25</td><td>0.00170555</td><td>46</td><td>0.000508665</td><td>67</td><td>0.0332631</td></tr><tr class="text"><td>5</td><td>0.0222665</td><td>26</td><td>0.00278997</td><td>47</td><td>0.0269992</td><td>68</td><td>0.0382672</td></tr><tr class="text"><td>6</td><td>0.0049056</td><td>27</td><td>0.0307625</td><td>48</td><td>0.00437808</td><td>69</td><td>0.0382672</td></tr><tr class="text"><td>7</td><td>0.0205182</td><td>28</td><td>0.0338425</td><td>49</td><td>0.0628339</td><td>70</td><td>0.0269992</td></tr><tr class="text"><td>8</td><td>0.0102288</td><td>29</td><td>0.0269992</td><td>50</td><td>0.0205182</td><td>71</td><td>0.0307625</td></tr><tr class="text"><td>9</td><td>0.0269992</td><td>30</td><td>0.0225776</td><td>51</td><td>0.050169</td><td>72</td><td>0.0277081</td></tr><tr class="text"><td>10</td><td>0.0276271</td><td>31</td><td>0.050169</td><td>52</td><td>0.0269992</td><td>73</td><td>0.0276271</td></tr><tr class="text"><td>11</td><td>0.0366289</td><td>32</td><td>0.050169</td><td>53</td><td>0.0307625</td><td>74</td><td>0.0276271</td></tr><tr class="text"><td>12</td><td>0.0366289</td><td>33</td><td>0.0338425</td><td>54</td><td>0.0269992</td><td>75</td><td>0.0628339</td></tr><tr class="text"><td>13</td><td>0.0276271</td><td>34</td><td>0.0225776</td><td>55</td><td>0.0353273</td><td>76</td><td>0.0225776</td></tr><tr class="text"><td>14</td><td>0.0338425</td><td>35</td><td>0.0332631</td><td>56</td><td>0.0276271</td><td>77</td><td>0.028886</td></tr><tr class="text"><td>15</td><td>0.0288953</td><td>36</td><td>0.00216192</td><td>57</td><td>0.0366289</td><td>78</td><td>0.0205182</td></tr><tr class="text"><td>16</td><td>0.0382672</td><td>37</td><td>0.0353273</td><td>58</td><td>0.0277081</td><td>79</td><td>0.0205182</td></tr><tr class="text"><td>17</td><td>0.0118167</td><td>38</td><td>0.0269992</td><td>59</td><td>0.0628339</td><td>80</td><td>0.0269992</td></tr><tr class="text"><td>18</td><td>0.0353273</td><td>39</td><td>0.0205182</td><td>60</td><td>0.0338425</td><td>81</td><td>0.0366289</td></tr><tr class="text"><td>19</td><td>0.0628339</td><td>40</td><td>0.0288953</td><td>61</td><td>0.0338425</td><td>82</td><td>0.0269992</td></tr><tr class="text"><td>20</td><td>0.0332631</td><td>41</td><td>0.0353273</td><td>62</td><td>0.0353273</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-308.435</td></tr>
</table>

|mrof_output=
<align id="tf1_2" folder="mrof"></align>

|sequence_logo=
[[Image:Logo_tf1_2.png|500px|center]]

|hmms=
<pre>
>AP_TF profile HMM generated consensus sequence
iDtGAqvniitEEtvRAHKLPtRPWsqsviYGGvYPnKinRKtiKLninLnGisiKtEF
LvvKKFsHPAAisFttLYDnniEi
</pre>

|pairwise_alignment=
<pre>
Domain 1 of 1, from 1 to 83: score 43.4, E = 8.5e-14

DTG_ILG template ->vDTGAsvlsviskecklaqklgltrkkafdpSSYvCivtllsysqPs
+DTGA+v ++i++e++ a kl+ ++P+
AP_TF 1 IDTGAQV-NIITEETVRAHKLP---------------------TRPW 25

sktsttaqdtirgagGqskiyvSklktsgqirknllslvtikitkGnvTe
s +s + + gG ++ k++ +++k + i ++ G
AP_TF 26 S-QS------V-IYGGVYPN-----KINRKTIK-----LNINLN-G---- 52

venrslpsdgvflvvtdpedqksrydvILGrldfLrqlnsvhidl<-
s++++ flvv + + + f + + + i++
AP_TF 53 ---ISIKTE--FLVV-KK------FSHPAAI-SFTTLYDNN-IEI 83
</pre>
}}

Name Father Distance to father Sons