imported>Gydbwiki: CAARD tat

2009-05-08T09:54:49Z

CAARD tat

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{{CAARD
|pin_output=
(B1147A04:0.303325,(Cinful1:0.345617,Retrosor1:0.236405)N2:0.215906,((RIRE2:0.029132,Orizacinfu:0.075526)N4:0.230674,(Grande:0.522943, (Ogre:0.639515,(Tft1:0.337216,(Tat4-1:0.304526,Tft2:0.356348)N8:0.128821)N7:0.076434)N6:0.260180)N5:0.068321)N3:0.061040);

|fin_output=
<table class="tabdata">
<tr class="grey">
<td>Name</td>
<td>Father</td>
<td>Distance to father</td>
<td>Sons</td>
<tr>
<tr><td>B1147A04</td><td>N1</td><td>0.303325</td><td>-</td></tr><tr><td>Cinful1</td><td>N2</td><td>0.345617</td><td>-</td></tr><tr><td>Retrosor1</td><td>N2</td><td>0.236405</td><td>-</td></tr><tr><td>RIRE2</td><td>N4</td><td>0.0291318</td><td>-</td></tr><tr><td>Orizacinfu</td><td>N4</td><td>0.0755262</td><td>-</td></tr><tr><td>Grande</td><td>N5</td><td>0.522943</td><td>-</td></tr><tr><td>Ogre</td><td>N6</td><td>0.639515</td><td>-</td></tr><tr><td>Tft1</td><td>N7</td><td>0.337216</td><td>-</td></tr><tr><td>Tat4-1</td><td>N8</td><td>0.304526</td><td>-</td></tr><tr><td>Tft2</td><td>N8</td><td>0.356348</td><td>-</td></tr><tr><td>N1</td><td>root!</td><td>-</td><td>B1147A04 N2 N3</td></tr><tr><td>N2</td><td>N1</td><td>0.215906</td><td>Cinful1 Retrosor1</td></tr><tr><td>N3</td><td>N1</td><td>0.0610404</td><td>N4 N5</td></tr><tr><td>N4</td><td>N3</td><td>0.230674</td><td>RIRE2 Orizacinfu</td></tr><tr><td>N5</td><td>N3</td><td>0.0683211</td><td>Grande N6</td></tr><tr><td>N6</td><td>N5</td><td>0.26018</td><td>Ogre N7</td></tr><tr><td>N7</td><td>N6</td><td>0.0764342</td><td>Tft1 N8</td></tr><tr><td>N8</td><td>N7</td><td>0.128821</td><td>Tat4-1 Tft2</td></tr>
</table>

|jpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<tr>
<tr class="text"><td>0</td><td>1.41368e-006</td><td>29</td><td>4.86429e-018</td><td>58</td><td>4.66671e-013</td><td>87</td><td>9.63661e-005</td></tr><tr class="text"><td>1</td><td>0.000785818</td><td>30</td><td>3.01313e-008</td><td>59</td><td>1.6776e-011</td><td>88</td><td>1.38765e-012</td></tr><tr class="text"><td>2</td><td>2.27026e-008</td><td>31</td><td>0.000171151</td><td>60</td><td>5.89048e-010</td><td>89</td><td>1.73183e-006</td></tr><tr class="text"><td>3</td><td>0.00507483</td><td>32</td><td>1.04585e-008</td><td>61</td><td>4.28759e-015</td><td>90</td><td>2.15333e-007</td></tr><tr class="text"><td>4</td><td>2.01005e-005</td><td>33</td><td>6.2955e-015</td><td>62</td><td>4.566e-009</td><td>91</td><td>6.43821e-015</td></tr><tr class="text"><td>5</td><td>3.53726e-007</td><td>34</td><td>1.10903e-005</td><td>63</td><td>2.09022e-005</td><td>92</td><td>0.00050763</td></tr><tr class="text"><td>6</td><td>9.042e-009</td><td>35</td><td>0.000130426</td><td>64</td><td>1.2049e-005</td><td>93</td><td>1.44632e-008</td></tr><tr class="text"><td>7</td><td>1.6277e-007</td><td>36</td><td>3.19345e-009</td><td>65</td><td>1.34854e-012</td><td>94</td><td>2.46642e-009</td></tr><tr class="text"><td>8</td><td>1.53342e-006</td><td>37</td><td>1.6104e-011</td><td>66</td><td>7.30346e-006</td><td>95</td><td>3.91563e-006</td></tr><tr class="text"><td>9</td><td>1.88822e-008</td><td>38</td><td>1.03722e-006</td><td>67</td><td>4.68925e-011</td><td>96</td><td>9.83054e-015</td></tr><tr class="text"><td>10</td><td>5.7376e-007</td><td>39</td><td>3.00308e-015</td><td>68</td><td>0.00291627</td><td>97</td><td>7.05276e-012</td></tr><tr class="text"><td>11</td><td>1.97012e-013</td><td>40</td><td>1.34097e-010</td><td>69</td><td>9.43145e-011</td><td>98</td><td>5.91373e-006</td></tr><tr class="text"><td>12</td><td>6.42366e-014</td><td>41</td><td>7.82515e-017</td><td>70</td><td>8.80988e-005</td><td>99</td><td>3.06561e-008</td></tr><tr class="text"><td>13</td><td>1.80724e-009</td><td>42</td><td>0.00975184</td><td>71</td><td>1.03416e-009</td><td>100</td><td>8.17295e-011</td></tr><tr class="text"><td>14</td><td>1.29388e-006</td><td>43</td><td>5.14249e-013</td><td>72</td><td>8.9066e-005</td><td>101</td><td>1.48106e-009</td></tr><tr class="text"><td>15</td><td>4.09213e-012</td><td>44</td><td>3.81251e-009</td><td>73</td><td>1.00951e-011</td><td>102</td><td>1.89571e-005</td></tr><tr class="text"><td>16</td><td>2.37299e-012</td><td>45</td><td>2.91563e-009</td><td>74</td><td>1.23689e-015</td><td>103</td><td>2.97866e-011</td></tr><tr class="text"><td>17</td><td>6.63906e-010</td><td>46</td><td>0.00507483</td><td>75</td><td>2.92218e-014</td><td>104</td><td>6.42094e-007</td></tr><tr class="text"><td>18</td><td>6.28341e-012</td><td>47</td><td>2.81925e-011</td><td>76</td><td>5.31879e-012</td><td>105</td><td>4.41981e-015</td></tr><tr class="text"><td>19</td><td>0.0173312</td><td>48</td><td>2.13087e-005</td><td>77</td><td>0.000191414</td><td>106</td><td>5.95987e-013</td></tr><tr class="text"><td>20</td><td>7.19865e-011</td><td>49</td><td>5.66222e-013</td><td>78</td><td>1.15391e-006</td><td>107</td><td>4.05319e-014</td></tr><tr class="text"><td>21</td><td>9.95909e-015</td><td>50</td><td>8.3792e-006</td><td>79</td><td>2.58017e-008</td><td>108</td><td>8.94314e-005</td></tr><tr class="text"><td>22</td><td>1.59868e-014</td><td>51</td><td>1.15531e-006</td><td>80</td><td>1.30999e-005</td><td>109</td><td>8.15832e-011</td></tr><tr class="text"><td>23</td><td>7.32091e-016</td><td>52</td><td>2.38958e-006</td><td>81</td><td>4.15227e-007</td><td>110</td><td>1.57442e-012</td></tr><tr class="text"><td>24</td><td>8.13337e-016</td><td>53</td><td>0.00990247</td><td>82</td><td>0.00507483</td><td>111</td><td>6.29e-009</td></tr><tr class="text"><td>25</td><td>7.2796e-008</td><td>54</td><td>8.82727e-012</td><td>83</td><td>3.51539e-006</td><td>112</td><td>2.70596e-009</td></tr><tr class="text"><td>26</td><td>1.92834e-014</td><td>55</td><td>1.15501e-009</td><td>84</td><td>9.04621e-007</td><td>113</td><td>4.44276e-011</td></tr><tr class="text"><td>27</td><td>1.36162e-010</td><td>56</td><td>0.00507483</td><td>85</td><td>2.86482e-011</td><td>114</td><td>6.08058e-006</td></tr><tr class="text"><td>28</td><td>3.05747e-008</td><td>57</td><td>1.87889e-011</td><td>86</td><td>6.31577e-006</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-2231.98</td></tr>
</table>

|jrof_output=
<align id="mag" folder="jrof"></align>

|mpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<tr>
<tr class="text"><td>0</td><td>3.6725e-006</td><td>29</td><td>2.25569e-016</td><td>58</td><td>6.98006e-012</td><td>87</td><td>0.000462618</td></tr><tr class="text"><td>1</td><td>0.000790939</td><td>30</td><td>1.6841e-007</td><td>59</td><td>4.21865e-011</td><td>88</td><td>3.63272e-012</td></tr><tr class="text"><td>2</td><td>3.64004e-008</td><td>31</td><td>0.000171607</td><td>60</td><td>2.02251e-009</td><td>89</td><td>8.21749e-006</td></tr><tr class="text"><td>3</td><td>0.00507721</td><td>32</td><td>4.94875e-008</td><td>61</td><td>1.81827e-014</td><td>90</td><td>2.90049e-007</td></tr><tr class="text"><td>4</td><td>2.06099e-005</td><td>33</td><td>3.11238e-014</td><td>62</td><td>1.87911e-008</td><td>91</td><td>2.24241e-014</td></tr><tr class="text"><td>5</td><td>9.00976e-007</td><td>34</td><td>1.1297e-005</td><td>63</td><td>3.45323e-005</td><td>92</td><td>0.000510622</td></tr><tr class="text"><td>6</td><td>2.59392e-008</td><td>35</td><td>0.000379112</td><td>64</td><td>1.60915e-005</td><td>93</td><td>2.8276e-008</td></tr><tr class="text"><td>7</td><td>2.47309e-007</td><td>36</td><td>6.71391e-009</td><td>65</td><td>1.66128e-011</td><td>94</td><td>7.03625e-009</td></tr><tr class="text"><td>8</td><td>3.59597e-006</td><td>37</td><td>4.60679e-011</td><td>66</td><td>3.48913e-005</td><td>95</td><td>5.55346e-006</td></tr><tr class="text"><td>9</td><td>3.01302e-008</td><td>38</td><td>1.0604e-006</td><td>67</td><td>3.63827e-010</td><td>96</td><td>1.47975e-013</td></tr><tr class="text"><td>10</td><td>5.76851e-007</td><td>39</td><td>8.01785e-014</td><td>68</td><td>0.00291829</td><td>97</td><td>4.07826e-011</td></tr><tr class="text"><td>11</td><td>7.22958e-013</td><td>40</td><td>4.95242e-010</td><td>69</td><td>4.52588e-010</td><td>98</td><td>8.20857e-006</td></tr><tr class="text"><td>12</td><td>3.57058e-013</td><td>41</td><td>8.2508e-016</td><td>70</td><td>9.82203e-005</td><td>99</td><td>4.69936e-008</td></tr><tr class="text"><td>13</td><td>3.0699e-009</td><td>42</td><td>0.051691</td><td>71</td><td>1.65234e-009</td><td>100</td><td>8.52691e-011</td></tr><tr class="text"><td>14</td><td>1.6756e-006</td><td>43</td><td>8.07757e-012</td><td>72</td><td>9.04857e-005</td><td>101</td><td>4.28075e-009</td></tr><tr class="text"><td>15</td><td>1.89075e-011</td><td>44</td><td>7.3326e-009</td><td>73</td><td>7.70404e-011</td><td>102</td><td>1.9261e-005</td></tr><tr class="text"><td>16</td><td>3.32507e-011</td><td>45</td><td>3.78818e-009</td><td>74</td><td>3.89697e-015</td><td>103</td><td>4.03253e-011</td></tr><tr class="text"><td>17</td><td>7.06141e-010</td><td>46</td><td>0.00507721</td><td>75</td><td>5.55726e-013</td><td>104</td><td>6.47817e-007</td></tr><tr class="text"><td>18</td><td>2.30741e-011</td><td>47</td><td>1.15373e-010</td><td>76</td><td>9.9636e-012</td><td>105</td><td>4.67254e-014</td></tr><tr class="text"><td>19</td><td>0.06183</td><td>48</td><td>2.59197e-005</td><td>77</td><td>0.000193033</td><td>106</td><td>2.33224e-012</td></tr><tr class="text"><td>20</td><td>1.74411e-010</td><td>49</td><td>1.5318e-012</td><td>78</td><td>1.17323e-006</td><td>107</td><td>7.7275e-013</td></tr><tr class="text"><td>21</td><td>4.65163e-014</td><td>50</td><td>8.94634e-006</td><td>79</td><td>4.13205e-008</td><td>108</td><td>8.99998e-005</td></tr><tr class="text"><td>22</td><td>4.80621e-014</td><td>51</td><td>1.18273e-006</td><td>80</td><td>1.39044e-005</td><td>109</td><td>1.8569e-010</td></tr><tr class="text"><td>23</td><td>1.42906e-015</td><td>52</td><td>3.27771e-006</td><td>81</td><td>6.86813e-007</td><td>110</td><td>7.55878e-012</td></tr><tr class="text"><td>24</td><td>8.35835e-015</td><td>53</td><td>0.053761</td><td>82</td><td>0.00507721</td><td>111</td><td>2.13339e-008</td></tr><tr class="text"><td>25</td><td>1.84309e-007</td><td>54</td><td>4.56922e-011</td><td>83</td><td>3.9448e-006</td><td>112</td><td>6.78394e-009</td></tr><tr class="text"><td>26</td><td>6.90828e-014</td><td>55</td><td>2.21269e-009</td><td>84</td><td>9.55472e-007</td><td>113</td><td>6.82608e-011</td></tr><tr class="text"><td>27</td><td>1.63109e-010</td><td>56</td><td>0.00507721</td><td>85</td><td>1.11599e-010</td><td>114</td><td>6.16635e-006</td></tr><tr class="text"><td>28</td><td>3.50803e-008</td><td>57</td><td>1.01897e-010</td><td>86</td><td>1.37113e-005</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-2121.62</td></tr>
</table>

|mrof_output=
<align id="mag" folder="mrof"></align>

|sequence_logo=
[[Image:Logo_tat.png|500px|center]]

|hmms=
<pre>
>AP_tat profile HMM generated consensus sequence
vDtGSslnvlfaktLqqmgverselqpsqsPliGvfpgetlmplGtItLPVtfGttenf
rTehvsFeVvDleaaYnaILGRPwLhakfkAvpstlhlcmKmpsprGvitvrG
</pre>

|pairwise_alignment=
<pre>
Domain 1 of 1, from 1 to 93: score 65.0, E = 2.8e-20

DTG_ILG template *->vDTGAsvlsviskecklaqklgltrkkafdpSSYvCivtllsysqPs
vDTG+s+ +v+ + +q++g +r++ +qPs
AP_tat 1 VDTGSSL-NVLFAK--TLQQMGVERSE----------------LQPS 28

sktsttaqdtirgagGqskiyvSklktsgqirknllslvtikitkGnvTe
+s++ i ++ G++ + ++g+ +t+ +t+G+ Te
AP_tat 29 --QSPL----IGVFPGETLM------PLGT--------ITLPVTFGT-TE 57

venrslpsdgvflvvtdpedqksrydvILGrldfLrqlnsvhidl<-*
+++++++s f vv d+e+ +y++ILGr ++L +++++++
AP_tat 58 NFRTEHVS---FEVV-DLEA---AYNAILGR-PWL-HAKFKAVPS 93
</pre>
}}

CAARD:Tat - Revision history

imported>Gydbwiki: CAARD tat