imported>Gydbwiki at 15:47, 4 May 2009

2009-05-04T15:47:41Z

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{{CAARD
|coments=
Ancestral ML reconstructions were performed using FastML 2.02 (Pupko et al. 2000). The tool generates six outputs:
*Pin; reconstructed ancestral NJ tree in newick format.
*Fin; parental relationship among reconstructed nodes and contemporary sequences.
*Jrof; multiple alignment of contemporary sequences and nodes reconstructed with the Joint method.
*Jpf; joint probability per position and total log likelihood.
*Mrof; multiple alignment of contemporary sequences and nodes reconstructed with the marginal method
*Mpf; marginal probability and total log likelihood
|pin_output=
(Retrosat-2:0.508055,(Del:0.418355,Peabody:0.549836)N2:0.130960,(Tma:0.402571,(Legolas:0.242758,T32022.14:0.203860)N4:0.161988)N3:0.114301);
|fin_output=
<table class="caard_table">
<tr>
<th>Name</th>
<th>Father</th>
<th>Distance to father</th>
<th>Sons</th>
</tr>
<tr><td>Retrosat-2</td><td>N1</td><td>0.508055</td><td>-</td></tr>
<tr><td>Del</td><td>N2</td><td>0.418355</td><td>-</td></tr>
<tr><td>Peabody</td><td>N2</td><td>0.549836</td><td>-</td></tr>
<tr><td>Tma</td><td>N3</td><td>0.402571</td><td>-</td></tr>
<tr><td>Legolas</td><td>N4</td><td>0.242758</td><td>-</td></tr>
<tr><td>T32022.14</td><td>N4</td><td>0.20386</td><td>-</td></tr>
<tr><td>N1</td><td>root!</td><td>-</td><td>Retrosat-2 N2 N3</td></tr>
<tr><td>N2</td><td>N1</td><td>0.13096</td><td>Del Peabody</td></tr>
<tr><td>N3</td><td>N1</td><td>0.114301</td><td>Tma N4</td></tr>
<tr><td>N4</td><td>N3</td><td>0.161988</td><td>Legolas T32022.14</td></tr>
</table>
|jpf_output=
Jpf ooutput test

}}

CAARD:Test - Revision history

imported>Gydbwiki at 15:47, 4 May 2009