imported>Gydbwiki at 09:12, 8 May 2009

2009-05-08T09:12:25Z

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{{CAARD
|pin_output=
(N1:0.0,CsRN1:0.300000);
|fin_output=
<table class="tabdata">
<tr class="grey">
<td>Name</td>
<td>Father</td>
<td>Distance to father</td>
<td>Sons</td>
</tr>
<tr><td>CsRN1</td><td>N1</td><td>0.3</td><td>-</td></tr><tr><td>Kabuki</td><td>N1</td><td>0.3</td><td>-</td></tr><tr><td>N1</td><td>root!</td><td>-</td><td>CsRN1 Kabuki</td></tr>
</table>
|jpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<tr>
<tr class="text"><td>0</td><td>0.032548</td><td>23</td><td>0.0224481</td><td>46</td><td>0.000318314</td><td>69</td><td>0.0275402</td></tr><tr class="text"><td>1</td><td>0.028196</td><td>24</td><td>0.000465707</td><td>47</td><td>0.0621819</td><td>70</td><td>0.0621819</td></tr><tr class="text"><td>2</td><td>0.0269084</td><td>25</td><td>0.0621819</td><td>48</td><td>0.0283934</td><td>71</td><td>0.0269084</td></tr><tr class="text"><td>3</td><td>0.0498761</td><td>26</td><td>9.8643e-005</td><td>49</td><td>0.0283934</td><td>72</td><td>0.000234719</td></tr><tr class="text"><td>4</td><td>0.0372241</td><td>27</td><td>0.0372241</td><td>50</td><td>0.0372241</td><td>73</td><td>0.000219649</td></tr><tr class="text"><td>5</td><td>0.000394</td><td>28</td><td>0.0372241</td><td>51</td><td>0.0275402</td><td>74</td><td>0.0201276</td></tr><tr class="text"><td>6</td><td>0.00496762</td><td>29</td><td>0.0201276</td><td>52</td><td>0.003304</td><td>75</td><td>0.0621819</td></tr><tr class="text"><td>7</td><td>0.0297219</td><td>30</td><td>0.0498761</td><td>53</td><td>0.0118237</td><td>76</td><td>0.000631961</td></tr><tr class="text"><td>8</td><td>0.032548</td><td>31</td><td>0.0269084</td><td>54</td><td>0.000193889</td><td>77</td><td>0.032548</td></tr><tr class="text"><td>9</td><td>0.0621819</td><td>32</td><td>0.000270872</td><td>55</td><td>0.000501149</td><td>78</td><td>0.028196</td></tr><tr class="text"><td>10</td><td>0.0330756</td><td>33</td><td>0.0259827</td><td>56</td><td>0.00197359</td><td>79</td><td>0.000870203</td></tr><tr class="text"><td>11</td><td>4.60464e-005</td><td>34</td><td>0.0372241</td><td>57</td><td>0.0621819</td><td>80</td><td>0.000944084</td></tr><tr class="text"><td>12</td><td>0.0410315</td><td>35</td><td>0.0269084</td><td>58</td><td>0.0372241</td><td>81</td><td>0.000394</td></tr><tr class="text"><td>13</td><td>0.0347441</td><td>36</td><td>0.00143919</td><td>59</td><td>0.028196</td><td>82</td><td>0.003304</td></tr><tr class="text"><td>14</td><td>0.0373745</td><td>37</td><td>0.0498761</td><td>60</td><td>0.000388376</td><td>83</td><td>0.003304</td></tr><tr class="text"><td>15</td><td>0.00277478</td><td>38</td><td>0.0358474</td><td>61</td><td>0.0347441</td><td>84</td><td>0.0621819</td></tr><tr class="text"><td>16</td><td>0.000184753</td><td>39</td><td>0.003304</td><td>62</td><td>0.000253439</td><td>85</td><td>0.00197082</td></tr><tr class="text"><td>17</td><td>0.00189948</td><td>40</td><td>0.00277478</td><td>63</td><td>0.00149859</td><td>86</td><td>0.028196</td></tr><tr class="text"><td>18</td><td>4.74821e-005</td><td>41</td><td>0.0621819</td><td>64</td><td>0.0259827</td><td>87</td><td>0.0001602</td></tr><tr class="text"><td>19</td><td>0.000260032</td><td>42</td><td>0.000832469</td><td>65</td><td>0.00197082</td><td>88</td><td>0.00197359</td></tr><tr class="text"><td>20</td><td>0.00210886</td><td>43</td><td>0.0621819</td><td>66</td><td>0.0498761</td><td> </td><td> </td></tr><tr class="text"><td>21</td><td>0.00149859</td><td>44</td><td>0.028196</td><td>67</td><td>0.0372241</td><td> </td><td> </td></tr><tr class="text"><td>22</td><td>0.00210886</td><td>45</td><td>0.0621819</td><td>68</td><td>0.028196</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-444.947</td></tr>
</table>
|jrof_output=
<align id="csrn1" folder="jrof"></align>
|mpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<tr>
<tr class="text"><td>0</td><td>0.0338425</td><td>23</td><td>0.0225776</td><td>46</td><td>0.000903596</td><td>69</td><td>0.0277081</td></tr><tr class="text"><td>1</td><td>0.028886</td><td>24</td><td>0.00120941</td><td>47</td><td>0.0628339</td><td>70</td><td>0.0628339</td></tr><tr class="text"><td>2</td><td>0.0276271</td><td>25</td><td>0.0628339</td><td>48</td><td>0.0288953</td><td>71</td><td>0.0276271</td></tr><tr class="text"><td>3</td><td>0.050169</td><td>26</td><td>0.000259589</td><td>49</td><td>0.0288953</td><td>72</td><td>0.00060996</td></tr><tr class="text"><td>4</td><td>0.0382672</td><td>27</td><td>0.0382672</td><td>50</td><td>0.0382672</td><td>73</td><td>0.000477705</td></tr><tr class="text"><td>5</td><td>0.00122284</td><td>28</td><td>0.0382672</td><td>51</td><td>0.0277081</td><td>74</td><td>0.0205182</td></tr><tr class="text"><td>6</td><td>0.0102288</td><td>29</td><td>0.0205182</td><td>52</td><td>0.00686751</td><td>75</td><td>0.0628339</td></tr><tr class="text"><td>7</td><td>0.0307625</td><td>30</td><td>0.050169</td><td>53</td><td>0.0118267</td><td>76</td><td>0.00170555</td></tr><tr class="text"><td>8</td><td>0.0338425</td><td>31</td><td>0.0276271</td><td>54</td><td>0.000508665</td><td>77</td><td>0.0338425</td></tr><tr class="text"><td>9</td><td>0.0628339</td><td>32</td><td>0.000821553</td><td>55</td><td>0.000994096</td><td>78</td><td>0.028886</td></tr><tr class="text"><td>10</td><td>0.0332631</td><td>33</td><td>0.0269992</td><td>56</td><td>0.00486276</td><td>79</td><td>0.00202297</td></tr><tr class="text"><td>11</td><td>0.000151071</td><td>34</td><td>0.0382672</td><td>57</td><td>0.0628339</td><td>80</td><td>0.00213116</td></tr><tr class="text"><td>12</td><td>0.050901</td><td>35</td><td>0.0276271</td><td>58</td><td>0.0382672</td><td>81</td><td>0.00122284</td></tr><tr class="text"><td>13</td><td>0.0353273</td><td>36</td><td>0.00288774</td><td>59</td><td>0.028886</td><td>82</td><td>0.00686751</td></tr><tr class="text"><td>14</td><td>0.053761</td><td>37</td><td>0.050169</td><td>60</td><td>0.000889856</td><td>83</td><td>0.00686751</td></tr><tr class="text"><td>15</td><td>0.00596595</td><td>38</td><td>0.0366289</td><td>61</td><td>0.0353273</td><td>84</td><td>0.0628339</td></tr><tr class="text"><td>16</td><td>0.00051148</td><td>39</td><td>0.00686751</td><td>62</td><td>0.000652718</td><td>85</td><td>0.00479559</td></tr><tr class="text"><td>17</td><td>0.0038781</td><td>40</td><td>0.00596595</td><td>63</td><td>0.00308282</td><td>86</td><td>0.028886</td></tr><tr class="text"><td>18</td><td>0.000143592</td><td>41</td><td>0.0628339</td><td>64</td><td>0.0269992</td><td>87</td><td>0.000389225</td></tr><tr class="text"><td>19</td><td>0.000821372</td><td>42</td><td>0.00224015</td><td>65</td><td>0.00479559</td><td>88</td><td>0.00486276</td></tr><tr class="text"><td>20</td><td>0.00437808</td><td>43</td><td>0.0628339</td><td>66</td><td>0.050169</td><td> </td><td> </td></tr><tr class="text"><td>21</td><td>0.00308282</td><td>44</td><td>0.028886</td><td>67</td><td>0.0382672</td><td> </td><td> </td></tr><tr class="text"><td>22</td><td>0.00437808</td><td>45</td><td>0.0628339</td><td>68</td><td>0.028886</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-409.852</td></tr>
</table>
|mrof_output=
<align id="csrn1" folder="mrof"></align>
|sequence_logo=
[[Image:Logo_csrn1.png|500px|center]]
|hmms=
<pre>
>AP_csrn1 profile HMM generated consensus sequence
VDTGAevSVLPvPKisklidsasYkLyAANGTrIATyGEksLvLDLkLRRAFkWiflLA
DvKtaIlGADFLTsyNLlVDvrekkLlDkl
</pre>
|pairwise_alignment=
<pre>
Domain 1 of 1, from 1 to 80: score 29.5, E = 1.3e-09

DTG_ILG template *->vDTGAsvlsviskecklaqklgltrkkafdpSSYvCivtllsysqPs
vDTGA+v sv++ + kl ++
AP_csrn1 1 VDTGAEV-SVLPVP--KISKL------------------------ID 20

sktsttaqdtirgagGqskiyvSklktsgqirknllslvtikitkGnvTe
s +s++ + +a+G ++ t+g ++ ++ +
AP_csrn1 21 S-ASYK----LYAANGTRIA------TYGE--------KSLVLD-----L 46

venrsl.psdgvflvvtdpedqksrydvILGrldfLrqlnsvhidl<-*
+++r++++ fl++ d +ILG dfL+ +n +d+
AP_csrn1 47 KLRRAFkW-I--FLLA-DV------KTAILGA-DFLTSYNLL-VDV 80
</pre>
}}

CAARD:Ty1 Copia - Revision history

imported>Gydbwiki at 09:12, 8 May 2009