CAARD:Ty3 - Revision history

imported>Gydbwiki: New page: {{CAARD |pin_output= (Tse3:0.830919,Ty3-1:0.956100,Skipper:0.588788); |fin_output=

Name Father Distance to f...
2009-05-08T14:00:00Z

New page: {{CAARD |pin_output= (Tse3:0.830919,Ty3-1:0.956100,Skipper:0.588788); |fin_output= <table class="tabdata"> <tbody><tr class="grey"> <td>Name</td> <td>Father</td> <td>Distance to f...

New page
{{CAARD
|pin_output=
(Tse3:0.830919,Ty3-1:0.956100,Skipper:0.588788);

|fin_output=
<table class="tabdata">
<tbody><tr class="grey">
<td>Name</td>
<td>Father</td>
<td>Distance to father</td>
<td>Sons</td>
</tr>
<tr><td>Tse1</td><td>N1</td><td>0.830919</td><td>-</td></tr><tr><td>Ty3-1</td><td>N1</td><td>0.9561</td><td>-</td></tr><tr><td>Skipper</td><td>N1</td><td>0.588788</td><td>-</td></tr><tr><td>N1</td><td>root!</td><td>-</td><td>Tse3 Ty3-1 Skipper</td></tr>
</tbody></table>

|jpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
</tr>
<tr class="text"><td>0</td><td>7.71989e-005</td><td>25</td><td>0.000197835</td><td>50</td><td>0.000235168</td><td>75</td><td>0.00558699</td></tr><tr class="text"><td>1</td><td>0.00558699</td><td>26</td><td>0.035642</td><td>51</td><td>2.26278e-006</td><td>76</td><td>3.00531e-005</td></tr><tr class="text"><td>2</td><td>0.00116759</td><td>27</td><td>0.0387272</td><td>52</td><td>1.33903e-005</td><td>77</td><td>7.8373e-005</td></tr><tr class="text"><td>3</td><td>0.0167251</td><td>28</td><td>0.035642</td><td>53</td><td>0.00237575</td><td>78</td><td>1.56056e-005</td></tr><tr class="text"><td>4</td><td>0.000998097</td><td>29</td><td>0.0273101</td><td>54</td><td>0.0235569</td><td>79</td><td>0.0284149</td></tr><tr class="text"><td>5</td><td>9.53449e-005</td><td>30</td><td>0.0207853</td><td>55</td><td>1.40259e-005</td><td>80</td><td>2.10258e-006</td></tr><tr class="text"><td>6</td><td>5.76348e-006</td><td>31</td><td>3.72038e-005</td><td>56</td><td>4.43678e-005</td><td>81</td><td>1.1961e-005</td></tr><tr class="text"><td>7</td><td>0.00064337</td><td>32</td><td>0.00960596</td><td>57</td><td>0.000220013</td><td>82</td><td>2.32328e-005</td></tr><tr class="text"><td>8</td><td>0.00129452</td><td>33</td><td>0.000429207</td><td>58</td><td>0.000699845</td><td>83</td><td>0.000661695</td></tr><tr class="text"><td>9</td><td>0.00393664</td><td>34</td><td>0.0178833</td><td>59</td><td>0.0511587</td><td>84</td><td>0.000224075</td></tr><tr class="text"><td>10</td><td>2.32867e-005</td><td>35</td><td>0.000836329</td><td>60</td><td>0.0269838</td><td>85</td><td>0.000292944</td></tr><tr class="text"><td>11</td><td>0.000280749</td><td>36</td><td>6.22664e-006</td><td>61</td><td>5.07977e-005</td><td>86</td><td>1.8557e-005</td></tr><tr class="text"><td>12</td><td>0.000188518</td><td>37</td><td>0.000283318</td><td>62</td><td>0.00250357</td><td>87</td><td>0.000134017</td></tr><tr class="text"><td>13</td><td>0.000224075</td><td>38</td><td>0.0024893</td><td>63</td><td>0.000106614</td><td>88</td><td>0.000220013</td></tr><tr class="text"><td>14</td><td>0.00229075</td><td>39</td><td>0.000807913</td><td>64</td><td>1.83928e-005</td><td>89</td><td>7.06886e-005</td></tr><tr class="text"><td>15</td><td>0.0311865</td><td>40</td><td>0.0369598</td><td>65</td><td>0.0015744</td><td>90</td><td>0.000160821</td></tr><tr class="text"><td>16</td><td>0.000106397</td><td>41</td><td>0.000209914</td><td>66</td><td>2.40678e-006</td><td>91</td><td>0.00987787</td></tr><tr class="text"><td>17</td><td>1.6104e-005</td><td>42</td><td>0.00116132</td><td>67</td><td>0.000171445</td><td>92</td><td>8.71348e-005</td></tr><tr class="text"><td>18</td><td>0.000790744</td><td>43</td><td>4.49954e-005</td><td>68</td><td>0.000612459</td><td>93</td><td>0.000209213</td></tr><tr class="text"><td>19</td><td>0.000360959</td><td>44</td><td>7.46584e-005</td><td>69</td><td>0.00253491</td><td>94</td><td>0.000143405</td></tr><tr class="text"><td>20</td><td>7.02617e-006</td><td>45</td><td>0.0269838</td><td>70</td><td>0.026806</td><td>95</td><td>1.0105e-005</td></tr><tr class="text"><td>21</td><td>0.00031787</td><td>46</td><td>9.57991e-005</td><td>71</td><td>3.62511e-005</td><td>96</td><td>0.00980469</td></tr><tr class="text"><td>22</td><td>0.00240666</td><td>47</td><td>3.92123e-005</td><td>72</td><td>5.41616e-006</td><td>97</td><td>0.035642</td></tr><tr class="text"><td>23</td><td>3.22825e-005</td><td>48</td><td>0.0548966</td><td>73</td><td>0.00393664</td><td>98</td><td>0.00224607</td></tr><tr class="text"><td>24</td><td>0.000106397</td><td>49</td><td>0.00229075</td><td>74</td><td>0.00128771</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-765.621</td></tr>
</table>

|jrof_output=
<align id="ty3" folder="jrof"></align>

|mpf_output=
<table class="tabdata">
<tr class="grey">
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
<td>Position</td>
<td>Joint probability</td>
</tr>
<tr class="text"><td>0</td><td>0.000133337</td><td>25</td><td>0.000258713</td><td>50</td><td>0.000261812</td><td>75</td><td>0.00582981</td></tr><tr class="text"><td>1</td><td>0.00582981</td><td>26</td><td>0.058676</td><td>51</td><td>2.28664e-005</td><td>76</td><td>9.0268e-005</td></tr><tr class="text"><td>2</td><td>0.00143848</td><td>27</td><td>0.076748</td><td>52</td><td>3.01934e-005</td><td>77</td><td>0.000107424</td></tr><tr class="text"><td>3</td><td>0.0167867</td><td>28</td><td>0.058676</td><td>53</td><td>0.0060212</td><td>78</td><td>3.49869e-005</td></tr><tr class="text"><td>4</td><td>0.00141439</td><td>29</td><td>0.053761</td><td>54</td><td>0.051691</td><td>79</td><td>0.050901</td></tr><tr class="text"><td>5</td><td>0.000182798</td><td>30</td><td>0.042645</td><td>55</td><td>6.44088e-005</td><td>80</td><td>1.26421e-005</td></tr><tr class="text"><td>6</td><td>2.39601e-005</td><td>31</td><td>0.000122099</td><td>56</td><td>0.000116902</td><td>81</td><td>4.52553e-005</td></tr><tr class="text"><td>7</td><td>0.000892044</td><td>32</td><td>0.00963627</td><td>57</td><td>0.000292746</td><td>82</td><td>5.6791e-005</td></tr><tr class="text"><td>8</td><td>0.00148952</td><td>33</td><td>0.00118251</td><td>58</td><td>0.0024233</td><td>83</td><td>0.00130113</td></tr><tr class="text"><td>9</td><td>0.00428418</td><td>34</td><td>0.040752</td><td>59</td><td>0.091904</td><td>84</td><td>0.000362609</td></tr><tr class="text"><td>10</td><td>8.44392e-005</td><td>35</td><td>0.000931932</td><td>60</td><td>0.058676</td><td>85</td><td>0.000359292</td></tr><tr class="text"><td>11</td><td>0.000548246</td><td>36</td><td>2.51926e-005</td><td>61</td><td>5.55151e-005</td><td>86</td><td>4.81248e-005</td></tr><tr class="text"><td>12</td><td>0.00023138</td><td>37</td><td>0.000376669</td><td>62</td><td>0.00256728</td><td>87</td><td>0.000247219</td></tr><tr class="text"><td>13</td><td>0.000362609</td><td>38</td><td>0.0029416</td><td>63</td><td>0.000335607</td><td>88</td><td>0.000292746</td></tr><tr class="text"><td>14</td><td>0.00298341</td><td>39</td><td>0.000959675</td><td>64</td><td>2.57421e-005</td><td>89</td><td>0.000305842</td></tr><tr class="text"><td>15</td><td>0.068765</td><td>40</td><td>0.06183</td><td>65</td><td>0.00209525</td><td>90</td><td>0.000261778</td></tr><tr class="text"><td>16</td><td>0.000309543</td><td>41</td><td>0.000224952</td><td>66</td><td>8.7596e-006</td><td>91</td><td>0.0106581</td></tr><tr class="text"><td>17</td><td>5.01389e-005</td><td>42</td><td>0.00165049</td><td>67</td><td>0.000198519</td><td>92</td><td>0.000181839</td></tr><tr class="text"><td>18</td><td>0.000885199</td><td>43</td><td>0.000133314</td><td>68</td><td>0.0021354</td><td>93</td><td>0.000728355</td></tr><tr class="text"><td>19</td><td>0.000450825</td><td>44</td><td>0.000117706</td><td>69</td><td>0.0078053</td><td>94</td><td>0.000171039</td></tr><tr class="text"><td>20</td><td>2.39284e-005</td><td>45</td><td>0.058676</td><td>70</td><td>0.076748</td><td>95</td><td>3.40244e-005</td></tr><tr class="text"><td>21</td><td>0.000953115</td><td>46</td><td>0.000188206</td><td>71</td><td>0.000143974</td><td>96</td><td>0.0123828</td></tr><tr class="text"><td>22</td><td>0.00322298</td><td>47</td><td>0.000180976</td><td>72</td><td>1.57106e-005</td><td>97</td><td>0.058676</td></tr><tr class="text"><td>23</td><td>4.49889e-005</td><td>48</td><td>0.091904</td><td>73</td><td>0.00428418</td><td>98</td><td>0.00262784</td></tr><tr class="text"><td>24</td><td>0.000309543</td><td>49</td><td>0.00298341</td><td>74</td><td>0.00167473</td><td> </td><td> </td></tr><tr><td colspan="7" class="grey right">Total log likelihood of joint reconstruction: </td><td class="grey">-700.61</td></tr>
</table>

|mrof_output=
<align id="ty3" folder="mrof"></align>

|sequence_logo=
[[Image:Logo_ty3.png|500px|center]]

|hmms=
<pre>
>AP_Ty3 profile HMM generated consensus sequence
lDTGSstSFInkRlIqdmKyhVhqTfPlLdVKGFVeTkSnlIqhnvrvkIkhNfDLyee
ifyIIDslfqqvilGnsIfkqryPkiL
</pre>

|pairwise_alignment=
<pre>
Domain 1 of 1, from 1 to 85: score 42.2, E = 2e-13

DTG_ILG template ->vDTGAsvlsviskecklaqklgltrkkafdpSSYvCivtllsysqPs
+DTG+s s+i+k+ l+q + ++ +
AP_Ty3 1 LDTGSST-SFINKR--LIQDMK---------------------YHVH 23

sktsttaqdtirgagGqskiyvSklktsgqirknllslvtikitkGnvTe
+ t++ + ++G ++ +s +i++n v++ki+ +
AP_Ty3 24 Q-TFP-----LLDVKGFVET------KSNLIQHN----VRVKIK-H---- 52

venrslpsdgvflvvtdpedqksrydvILGrldfLrqlnsvhidl<-
n +l ++ +++++d + +vILG+ + +q + +
AP_Ty3 53 --NFDLYEE--IFYIIDSLF----QQVILGN-SIFKQRY---PKI 85
</pre>
}}