https://gydb.org/index.php?action=history&feed=atom&title=Element%3ACico1 2026-06-10T18:43:23Z Revision history for this page on the wiki MediaWiki 1.35.0 https://gydb.org/index.php?title=Element:Cico1&diff=614&oldid=prev 2010-01-27T16:29:43Z

<p></p> <p><b>New page</b></p><div>{{Element<br /> |genbank=[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&amp;val=154726956 154726956]<br /> |type=GalEA<br /> |genus=Undetermined<br /> |subfamily=Branch 1<br /> |family= Ty1/Copia<br /> |group= LTR retroelements<br /> |description=''Cico1'' is a ''Ty1/Copia''-like LTR retrotransposon described in the genome of the urochordate ''Ciona intestinalis'' ([[Literature:98385|Terrat ''et al.'' 2008]]). It belongs to ''GalEA'' clade a ''Ty1/Copia'' lineage specifically found in marin animals ([[Literature:98385|Terrat ''et al.'' 2008]]). <br /> <br /> The genome of ''Cico1'', of 4513 bp in size, includes 323-bp LTRs that flank an internal region containing a Primer Binding Site (PBS) complementary to a tRNA&lt;sup&gt;Met&lt;/sup&gt;, a single large Open Reading Frame (ORF) (which harbors a frameshift) and a Polypurine Tract (PPT) adjacent to its 3’LTR. The ORF displays the typical gag and pol polyprotein domains of ''Ty1/Copia'' LTR retrotransposons: gag, protease, integrase, reverse transcriptase and RNase H ([[Literature:98385|Terrat ''et al.'' 2008]]).<br /> |structure=Cico1.png<br /> |host=Ciona intestinalis<br /> |hostpic=Ciona_intestinalis.gif<br /> |literature=*[[Literature:15303|Mobile DNA II. (Craig et al. 2002)]]<br /> |picowner=[http://www.onderwaterwereld.net/oww_ml/php/fotogroot.php?&amp;TLC=UK&amp;SOC=ZKPPN&amp;SSC=Ciona%20intestinalis&amp;FTC=DSC_7282_doorschijnende_zakpijp.jpg&amp;GBD=ALLE Courtesy of &quot;onderwaterwereld&quot; web site, copyright of the author Duncan van Vliet]<br /> }}<br /> [[Category:Element]]</div>

imported>Gydbwiki