https://gydb.org/index.php?action=history&feed=atom&title=Element%3ACoDi5.1 2026-06-09T17:29:58Z Revision history for this page on the wiki MediaWiki 1.35.0 https://gydb.org/index.php?title=Element:CoDi5.1&diff=909&oldid=prev 2010-02-22T16:32:25Z

<p></p> <p><b>New page</b></p><div>{{Element<br /> |genbank=[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&amp;val=169639619 169639619]<br /> |type= CoDi-II<br /> |genus=Undetermined<br /> |subfamily=Branch 1<br /> |family= Ty1/Copia<br /> |group= LTR retroelements<br /> |description=''CoDi5.1'' is a ''Ty1/Copia'' LTR retrotransposon described in the genome of the marine pinnate diatom ''Phaeodactylum tricornutum'' ([[Literature:100685|Maumus ''et al.'' 2009]]; [[Literature:86909|Bowler ''et al.'' 2008]]). This element belongs to ''CoDi-II'' clade ([[Literature:100685|Maumus ''et al.'' 2009]]) within Branch 1 of the ''Ty1/Copia'' family ([[Literature:100596|Llorens ''et al''. 2009]]).<br /> <br /> ''CoDi5.1'' genome, of 5274 bp in size, includes LTRs of 203 nts flanking an internal region that encodes a long Open Reading Frame (ORF) interrupted by one stop codon. The ORF contains the ''gag'' and ''pol'' typical structure of the ''Ty1/Copia'' LTR retrotransposons: gag, protease, integrase, reverse transcriptase and ribonuclease H (for more details, see [[Literature:100685|Maumus ''et al.'' 2009]]). <br /> |structure=CoDi5-1.png<br /> |host=Phaeodactylum tricornutum<br /> |hostpic=Phaeodactylum_tricornutum2.jpg<br /> |literature=*[[Literature:15303|Mobile DNA II. (Craig et al. 2002)]]<br /> |picowner=[http://bioinformatics.psb.ugent.be/genomes/view/Phaeodactylum-tricornutum Courtesy of Dr. Yves Van de Peer, VIB Department of Plant Systems Biology, UGent Ghent University]<br /> }}<br /> [[Category:Element]]</div>

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