https://gydb.org/index.php?action=history&feed=atom&title=Element%3ACoDi5.2 2026-06-09T16:14:17Z Revision history for this page on the wiki MediaWiki 1.35.0 https://gydb.org/index.php?title=Element:CoDi5.2&diff=910&oldid=prev 2010-02-22T16:32:49Z

<p></p> <p><b>New page</b></p><div>{{Element<br /> |genbank=[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&amp;val=169639622 169639622]<br /> |type= CoDi-II<br /> |genus=Undetermined<br /> |subfamily=Branch 1<br /> |family= Ty1/Copia<br /> |group= LTR retroelements<br /> |description=''CoDi5.2'' is a ''Ty1/Copia'' LTR retrotransposon described in the genome of the marine pinnate diatom ''Phaeodactylum tricornutum'' ([[Literature:100685|Maumus ''et al.'' 2009]]; [[Literature:86909|Bowler ''et al.'' 2008]]). This element belongs to ''CoDi-II'' clade ([[Literature:100685|Maumus ''et al.'' 2009]]) within Branch 1 of the ''Ty1/Copia'' family ([[Literature:100596|Llorens ''et al''. 2009]]).<br /> <br /> ''CoDi5.2'' genome, of 5670 bp in size, includes LTRs of 308 bp flanking an internal region that encodes for two overlapping Open Reading Frames (ORFs) showing the ''gag'' and ''pol'' typical structure of the ''Ty1/Copia'' LTR retrotransposons: gag, protease, integrase, reverse transcriptase and ribonuclease H (for more details, see [[Literature:100685|Maumus ''et al.'' 2009]]). <br /> |structure=CoDi5-2.png<br /> |host=Phaeodactylum tricornutum<br /> |hostpic=Phaeodactylum_tricornutum2.jpg<br /> |literature=*[[Literature:15303|Mobile DNA II. (Craig et al. 2002)]]<br /> |picowner=[http://bioinformatics.psb.ugent.be/genomes/view/Phaeodactylum-tricornutum Courtesy of Dr. Yves Van de Peer, VIB Department of Plant Systems Biology, UGent Ghent University]<br /> }}<br /> [[Category:Element]]</div>

imported>Gydbwiki