https://gydb.org/index.php?action=history&feed=atom&title=Element%3ACoDi5.5 2026-06-09T16:14:39Z Revision history for this page on the wiki MediaWiki 1.35.0 https://gydb.org/index.php?title=Element:CoDi5.5&diff=914&oldid=prev 2010-02-22T16:31:30Z

<p></p> <p><b>New page</b></p><div>{{Element<br /> |genbank=[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&amp;val=169639631 169639631]<br /> |type= CoDi-II<br /> |genus=Undetermined<br /> |subfamily=Branch 1<br /> |family= Ty1/Copia<br /> |group= LTR retroelements<br /> |description=''CoDi5.5'' is a ''Ty1/Copia'' LTR retrotransposon described in the genome of the marine algae phytoplankton, ''Thalassiosira pseudonana'' ([[Literature:100685|Maumus ''et al.'' 2009]]; [[Literature:86909|Bowler ''et al.'' 2008]]). This element belongs to ''CoDi-II'' clade ([[Literature:100685|Maumus ''et al.'' 2009]]) within Branch 1 of the ''Ty1/Copia'' family ([[Literature:100596|Llorens ''et al''. 2009]]).<br /> <br /> The genome of ''CoDi5.5'', of 5758 bp in size, includes LTRs of 246 nt bounding an internal region that encodes for two overlapping Open Reading Frames (ORFs). The first ORF contains the putative ''gag'' domains, while the second larger ORF displays the typical pol polyprotein structure of ''Ty1/Copia'' LTR retrotransposons (for more details, see [[Literature:100685|Maumus ''et al.'' 2009]]). <br /> |structure=CoDi5-5.png<br /> |host=Thalassiosira pseudonana<br /> |hostpic=Thalassiosira_pseudonana.jpg<br /> |literature=*[[Literature:15303|Mobile DNA II. (Craig et al. 2002)]]<br /> |picowner= [http://gtresearchnews.gatech.edu/newsrelease/diatom-structure.htm Courtesy of Nils Kröger, Georgia Institute of Technology, Atlanta, USA]<br /> }}<br /> [[Category:Element]]</div>

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