https://gydb.org/index.php?action=history&feed=atom&title=Element%3ACoDi6.2 2026-06-09T19:51:58Z Revision history for this page on the wiki MediaWiki 1.35.0 https://gydb.org/index.php?title=Element:CoDi6.2&diff=917&oldid=prev 2010-04-08T19:00:57Z

<p></p> <p><b>New page</b></p><div>{{Element<br /> |genbank=[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&amp;val=169639640 169639640]<br /> |type= CoDi-D<br /> |genus=Undetermined<br /> |subfamily=Branch 1<br /> |family= Ty1/Copia<br /> |group= LTR retroelements<br /> |description=''CoDi6.2'' is a ''Ty1/Copia''-like LTR retrotransposon described together with several other ''Ty1/Copia'' elements termed CoDi-like in the genome of the marine algae phytoplankton ''Thalassiosira pseudonana'' ([[Literature:100685|Maumus ''et al.'' 2009]]; [[Literature:86909|Bowler ''et al.'' 2008]]). We use the term ''CoDi-D'' ([[Literature:100596|Llorens ''et al''. 2009]]) to phylogenetically differentiate the two clades constituted by the distinct ''CoDi-6''-like elements described by Maumus et al. ([[Literature:100685|2009]]) in ''Phaeodactylum tricornutum'' and ''Thalassiosira pseudonana''. <br /> <br /> ''CoDi6.2'' genome is about 5.2 Kb in size. It includes LTRs of 242 nts flanking an internal region that encodes a long Open Reading Frame (ORF) of 1506 amino acids. The ORF contains the ''gag'' and ''pol'' typical domains structure of the ''Ty1/Copia'' LTR retrotransposons: gag (displaying two zing-finger motifs), protease, integrase, reverse transcriptase and ribonuclease H. For more details, see ([[Literature:100685|Maumus ''et al.'' 2009]]). <br /> |structure=CoDi6-2.png<br /> |host=Thalassiosira pseudonana<br /> |hostpic=Thalassiosira_pseudonana.jpg<br /> |literature=*[[Literature:15303|Mobile DNA II. (Craig et al. 2002)]]<br /> |picowner=[http://gtresearchnews.gatech.edu/newsrelease/diatom-structure.htm Courtesy of Nils Kröger, Georgia Institute of Technology, Atlanta (USA)])<br /> }}<br /> [[Category:Element]]</div>

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