https://gydb.org/index.php?action=history&feed=atom&title=Element%3ACoDi6.5 2026-06-09T16:14:48Z Revision history for this page on the wiki MediaWiki 1.35.0 https://gydb.org/index.php?title=Element:CoDi6.5&diff=920&oldid=prev 2010-04-08T18:59:27Z

<p></p> <p><b>New page</b></p><div>{{Element<br /> |genbank=[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&amp;val=169639646 169639646]<br /> |type= CoDi-D<br /> |genus=Undetermined<br /> |subfamily=Branch 1<br /> |family= Ty1/Copia<br /> |group= LTR retroelements<br /> |description=''CoDi6.5'' is a ''Ty1/Copia''-like LTR retrotransposon described in the genome of the marine pinnate diatom ''Phaeodactylum tricornutum'' ([[Literature:100685|Maumus ''et al.'' 2009]]; [[Literature:86909|Bowler ''et al.'' 2008]]). We use the term ''CoDi-D'' ([[Literature:100596|Llorens ''et al''. 2009]]) to phylogenetically differentiate the two clades constituted by the distinct ''CoDi-6''-like elements described by Maumus et al. ([[Literature:100685|2009]]) in ''Phaeodactylum tricornutum'' and ''Thalassiosira pseudonana''. <br /> <br /> ''CoDi6.5'' genome, of 5349 bp in size, includes LTRs of 348 nts flanking a single Open Reading Frame (ORF). The translated gag-pol polyprotein, of about 170 kD, presents the characteristic domain order of ''Ty1/Copia'' LTR retrotransposons: gag (displaying two zing-finger motifs), protease, integrase, reverse transcriptase and RNase H. For more details, see ([[Literature:100685|Maumus ''et al.'' 2009]]). <br /> |structure=CoDi6-5.png<br /> |host=Phaeodactylum tricornutum<br /> |hostpic=Phaeodactylum_tricornutum2.jpg<br /> |literature=*[[Literature:15303|Mobile DNA II. (Craig et al. 2002)]]<br /> |picowner=[http://bioinformatics.psb.ugent.be/genomes/view/Phaeodactylum-tricornutum Courtesy of Dr. Yves Van de Peer, VIB Department of Plant Systems Biology, UGent Ghent University]=<br /> }}<br /> [[Category:Element]]</div>

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