https://gydb.org/index.php?action=history&feed=atom&title=Element%3ACoDi6.6 2026-06-09T14:56:40Z Revision history for this page on the wiki MediaWiki 1.35.0 https://gydb.org/index.php?title=Element:CoDi6.6&diff=921&oldid=prev 2010-04-08T18:56:47Z

<p></p> <p><b>New page</b></p><div>{{Element<br /> |genbank=[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&amp;val=169639648 169639648]<br /> |type= CoDi-C <br /> |genus=Undetermined<br /> |subfamily=Branch 1<br /> |family= Ty1/Copia<br /> |group= LTR retroelements<br /> |description=''CoDi6.6'' is a Ty1/Copia LTR retrotransposon described in the genome of the marine pinnate diatom ''Phaeodactylum tricornutum'' ([[Literature:100685|Maumus ''et al.'' 2009]]; [[Literature:86909|Bowler ''et al.'' 2008]]). We use the term ''CoDi-C'' ([[Literature:100596|Llorens ''et al''. 2009]]) to phylogenetically differentiate the two clades constituted by the distinct ''CoDi-6''-like elements described by Maumus et al. ([[Literature:100685|2009]]) in ''Phaeodactylum tricornutum'' and ''Thalassiosira pseudonana''. <br /> <br /> The genome of ''CoDi6.6'' is 8062 bp in size, including LTRs of 279 nt. The LTRs bounded internal region of this element encodes for two overlapping Open Reading Frames (ORFs). The first ORF contains the putative ''gag'' domains, while the second larger ORF displays the typical pol polyprotein structure of ''Ty1/copia'' LTR retrotransposons (protease, integrase, reverse transcriptase and ribonuclease H). For more details, see ([[Literature:100685|Maumus ''et al.'' 2009]]). <br /> |structure=CoDi6-6.png<br /> |host=Phaeodactylum tricornutum<br /> |hostpic=Phaeodactylum_tricornutum2.jpg<br /> |literature=*[[Literature:15303|Mobile DNA II. (Craig et al. 2002)]]<br /> |picowner=[http://bioinformatics.psb.ugent.be/genomes/view/Phaeodactylum-tricornutum Courtesy of Dr. Yves Van de Peer, VIB Department of Plant Systems Biology, UGent Ghent University]<br /> }}<br /> [[Category:Element]]</div>

imported>Gydbwiki