https://gydb.org/index.php?action=history&feed=atom&title=Element%3AKoco 2026-06-09T14:56:20Z Revision history for this page on the wiki MediaWiki 1.35.0 https://gydb.org/index.php?title=Element:Koco&diff=649&oldid=prev 2010-01-13T16:00:35Z

<p></p> <p><b>New page</b></p><div>{{Element<br /> |genbank=[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&amp;val=1255921 1255921]<br /> |type=Copia<br /> |genus=Hemivirus<br /> |subfamily=Branch 2<br /> |family= Ty1/Copia<br /> |group= LTR retroelements<br /> |description=''Koco'' (koepferae Copia) is a ''Ty1/Copia'' LTR retrotransposon found in the genome of ''Drosophila koepferae'' (Francino and Cabre, Unpublished data, GenBank accession [http://www.ncbi.nlm.nih.gov/nuccore/1255921 X96971]). This element belongs to ''Copia'' clade, which gives the name to a genus within the current ICTV classification of the ''Ty1/Copia'' into three genera – Pseudovirus, Hemivirus and Sirevirus ([[Literature:100591|Boeke ''et al''. 2005]]). <br /> <br /> The genome of ''Koco'' is 4982 bp in size, including LTRs of 248 (5’LTR) and 247 nts long (3’LTR). This element contains a Primer Binding Site (PBS) for a tRNA&lt;sup&gt;Met&lt;/sup&gt;, two overlapping Open Reading Frames (ORFs) containing the typical ''gag'' and ''pol'' domains of ''Ty1/Copia'' LTR retrotransposons: gag, protease, integrase, reverse transcriptase and ribonuclease H; and a Polypurine Tract (PPT) upstream its 3’ LTR (see also, [[Literature:100596|Llorens ''et al''. 2009]]).|structure=koco.png<br /> |host=Drosophila spp.<br /> |hostpic=Drosophila_melanogaster.gif<br /> |literature=*[[Literature:15303|Mobile DNA II. (Craig et al. 2002)]]<br /> |picowner=[http://www.molgen.mpg.de/ Image, courtesy of Andreas Trepte, Max-Planck Institute for Molecular Genetics]<br /> }}<br /> [[Category:Element]]</div>

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