https://gydb.org/index.php?action=history&feed=atom&title=Element%3AOlco1 2026-06-09T16:14:39Z Revision history for this page on the wiki MediaWiki 1.35.0 https://gydb.org/index.php?title=Element:Olco1&diff=575&oldid=prev 2010-01-27T16:28:51Z

<p></p> <p><b>New page</b></p><div>{{Element<br /> |genbank=[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&amp;val=154726954 154726954]<br /> |type= GalEA<br /> |genus=Undetermined<br /> |subfamily=Branch 1<br /> |family= Ty1/Copia<br /> |group= LTR retroelements<br /> |description=''Olco1'', a ''Ty1/Copia''-like LTR retrotransposon, is associated to the family of ''GalEa''-like elements and has been described in the genome of the Japanese medaka fish (''Oryzias latipes'') ([[Literature:98385|Terrat ''et al.'' 2008]]). ''Olco1'' belongs to ''GalEA'' clade a ''Ty1/Copia'' lineage specifically found in marin animals ([[Literature:98385|Terrat ''et al.'' 2008]]). <br /> <br /> The genome of ''Olco1'', of 4760 bp in size, includes LTRs of 187 bp long bounding an internal region that contains a Primer Binding Site (PBS) complementary to a tRNA&lt;sup&gt;Met&lt;/sup&gt;, a single large Open Reading Frame (ORF) (which harbors a stop codon and a frameshift) and a Polypurine Tract (PPT) upstream its 3’LTR. The ORF displays the typical gag and pol polyprotein domains of ''Ty1/Copia'' LTR retrotransposons: gag, protease, integrase, reverse transcriptase and RNase H ([[Literature:98385|Terrat ''et al.'' 2008]]).<br /> |structure=Olco1.png<br /> |host=Oryzias latipes<br /> |hostpic=Oryzias_latipes.jpg<br /> |literature=*[[Literature:15303|Mobile DNA II. (Craig et al. 2002)]]<br /> |picowner=[http://genome.ucsc.edu/images/Oryzias_latipes.jpg Courtesy of Prof. Shinichi Morishita, University of Tokyo]<br /> }}<br /> [[Category:Element]]</div>

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