https://gydb.org/index.php?action=history&feed=atom&title=Element%3APoco 2026-06-09T17:28:20Z Revision history for this page on the wiki MediaWiki 1.35.0 https://gydb.org/index.php?title=Element:Poco&diff=573&oldid=prev 2010-01-19T15:09:17Z

<p></p> <p><b>New page</b></p><div>{{Element<br /> |genbank=[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&amp;val=157365037 157365037 (nuc 45758-50038)]<br /> |type= Oryco<br /> |genus=Undetermined<br /> |subfamily=Branch 2<br /> |family= Ty1/Copia<br /> |group= LTR retroelements<br /> |description=''Poco'' (''Populus'' ''Copia'' element) is a ''Ty1/Copia'' LTR retrotransposon found in the genome of the deciduous broadleaf tree &quot;black cottonwood&quot; (''Populus trichocarpa'') ([[Literature:100596|Llorens ''et al''. 2009]]). This element belongs to ''Oryco'' clade within Branch 2 of the ''Ty1/Copia'' family ([[Literature:100596|Llorens ''et al''. 2009]]). The genome of ''Poco'' is about of 4.2 Kb in size (4281 bp long), including a 237-bp 5’LTR and a 306-bp 3’LTR. Their different size is due to a deletion (or insertion) of 69 bp. The LTRs flank two overlapping Open Reading Frames (ORFs) that display the typical ''gag'' and ''pol'' domains organization of ''Ty1/Copia'' LTR retrotransposons (gag, protease, integrase, reverse transcriptase and ribonuclease H). <br /> |structure=poco.png<br /> |host=Populus trichocarpa<br /> |hostpic=Populus_trichocarpa.jpg<br /> |literature=*[[Literature:15303|Mobile DNA II. (Craig et al. 2002)]]<br /> |picowner=[http://en.wikipedia.org/wiki/Populus_trichocarpa Wikipedia, courtesy of Walter Siegmund]<br /> }}<br /> [[Category:Element]]</div>

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