https://gydb.org/index.php?action=history&feed=atom&title=Element%3ARIRE2 2026-06-09T16:11:03Z Revision history for this page on the wiki MediaWiki 1.35.0 https://gydb.org/index.php?title=Element:RIRE2&diff=407&oldid=prev 2009-11-10T18:28:39Z

<p></p> <p><b>New page</b></p><div>{{Element<br /> |genbank=[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&amp;val=5902443 AB030283]<br /> |type=Tat<br /> |genus=Athila/Tat<br /> |subfamily=Branch 2<br /> |family=Ty3/Gypsy<br /> |group=LTR retroelements<br /> |description=RIRE2 is a LTR retrotransposon described in the genome of ''Oryza sativa'' ([[Literature:55973|Ohtsubo, Kumekawa and Ohtsubo 1999]]). This element belongs to a lineage of plant LTR retrotransposons (''Tat''), sibling of other lineage of putative plant endogenous retroviruses (''Athila''), providing evidence of a shared ancestral lineage originally described as class A by Wright and Voytas ([[Literature:83586|1998]]). The genomic structure of RIRE2 is 11.2 Kb in size including LTRs of 441 nt. The internal region displays a Primer Binding Site (PBS) complementary to a tRNA&lt;sup&gt;Arg&lt;/sup&gt;, two Open Reading Frames (ORFs) for ''gag'' and ''pol ''genes, as well as three complementary ORFs named ORF5, ORF4, and ORF3 displayed between the integrase domain, and also, a Polypurine Tract (PPT) adjacent to the 3&amp;acute;LTR ([[Literature:55973|Ohtsubo, Kumekawa and Ohtsubo 1999]]).<br /> |structure=Rire2.png<br /> |host=Oryza sativa<br /> |hostpic=Oryza_sativa.gif<br /> |literature=*[[Literature:15303|Mobile DNA II. (Craig et al. 2002)]]<br /> |picowner=[http://www.biotechvana.com Image, Carlos Llorens, &lt;br&gt;Copyright, GyDB, Biotech Vana]<br /> }}</div>

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