https://gydb.org/index.php?action=history&feed=atom&title=Element%3ARetrofit 2026-06-09T17:30:12Z Revision history for this page on the wiki MediaWiki 1.35.0 https://gydb.org/index.php?title=Element:Retrofit&diff=617&oldid=prev 2010-01-18T14:30:09Z

<p></p> <p><b>New page</b></p><div>{{Element<br /> |genbank=[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=nucleotide&amp;val=2586080 2586080]<br /> |type=Retrofit<br /> |genus=Undetermined<br /> |subfamily=Branch 2<br /> |family= Ty1/Copia<br /> |group= LTR retroelements<br /> |description= ''Retrofit'' is a ''Ty1/Copia''-like LTR retrotransposon found in the ''Xa21'' disease resistance gene family of rice (''Oryza longistaminata'') genome ([[Literature:100617|Song ''et al.'' 1997]]). It belongs and gives the name to the ''Retrofit'' clade within Branch 2 of the ''Ty1/Copia'' family ([[Literature:100596|Llorens ''et al''. 2009]]). <br /> <br /> ''Retrofit'' full-length genome is 4866 bp in size, including two 232-bp LTRs ([[Literature:59075|Peterson-Burch and Voytas 2002]]; [[Literature:100617|Song ''et al.'' 1997]]). The internal region encodes for a single long Open Reading Frame (ORF) of 1445 amino acids containing the ''gag'' and ''pol'' domains typical of ''Ty1/Copia'' LTR retrotransposons: gag (with a characteristic nucleocapsid zinc finger-like motif), protease, integrase, reverse transcriptase and RNase H ([[Literature:59075|Peterson-Burch and Voytas 2002]]). <br /> |structure=Retrofit.png<br /> |host=Oryza longistaminata<br /> |hostpic=Oryza_longistaminata.jpg<br /> |literature=*[[Literature:15303|Mobile DNA II. (Craig et al. 2002)]]<br /> |picowner=[http://www.invasive.org/browse/detail.cfm?imgnum=0015012 USDA APHIS PPQ Archive's Images, &quot;Center for Invasive Species and ecosystem Health&quot;]<br /> }}<br /> [[Category:Element]]</div>

imported>Dtamarit