https://gydb.org/index.php?action=history&feed=atom&title=Phylogeny%3AAP_Caulimoviridae 2026-06-09T18:15:46Z Revision history for this page on the wiki MediaWiki 1.35.0 https://gydb.org/index.php?title=Phylogeny:AP_Caulimoviridae&diff=716&oldid=prev 2010-06-17T15:22:16Z

<p></p> <p><b>New page</b></p><div>[[Category:Phylogeny]]<br /> {{Phylogeny<br /> |map=&lt;imagemap&gt;<br /> Image:AP_caulimoviridae.png|center<br /> rect 315 147 347 163 [[Element:CSSV|CSSV]]<br /> rect 315 477 347 493 [[Element:CaMV|CaMV]]<br /> rect 315 399 345 415 [[Element:SVBV|SVBV]]<br /> rect 315 496 352 512 [[Element:LLDAV|LLDAV]]<br /> rect 315 167 356 183 [[Element:ScBIMV|ScBIMV]]<br /> rect 315 458 348 474 [[Element:CERV|CERV]]<br /> rect 315 419 338 435 [[Element:FMV|FMV]]<br /> rect 315 186 365 202 [[Element:ComYMV|ComYMV]]<br /> rect 315 264 352 280 [[Element:BSVAV|BSVAV]]<br /> rect 315 302 355 318 [[Element:SbCMV|SbCMV]]<br /> rect 315 341 365 357 [[Element:CmYLCV|CmYLCV]]<br /> rect 315 322 347 338 [[Element:PCSV|PCSV]]<br /> rect 315 516 355 532 [[Element:CSVMV|CSVMV]]<br /> rect 315 89 361 105 [[Element:BSCVBV|BSCVBV]]<br /> rect 315 225 345 241 [[Element:KTSV|KTSV]]<br /> rect 315 205 352 221 [[Element:BSMyV|BSMyV]]<br /> rect 315 244 354 260 [[Element:BSGFV|BSGFV]]<br /> rect 315 12 354 28 [[Element:BSOLV|BSOLV]]<br /> rect 315 283 348 299 [[Element:BRRV|BRRV]]<br /> rect 315 361 354 377 [[Element:RuFDV|RuFDV]]<br /> rect 315 108 339 124 [[Element:DBV|DBV]]<br /> rect 315 70 344 86 [[Element:DrMV|DrMV]]<br /> rect 315 380 346 396 [[Element:EVCV|EVCV]]<br /> rect 315 31 347 47 [[Element:CLNV|CLNV]]<br /> rect 315 128 347 144 [[Element:CYMV|CYMV]]<br /> rect 315 50 344 66 [[Element:TaBV|TaBV]]<br /> rect 315 438 343 454 [[Element:MiMV|MiMV]]<br /> rect 314 535 344 551 [[Element:TVCV|TVCV]]<br /> rect 314 555 345 571 [[Element:PVCV|PVCV]]<br /> rect 314 574 345 590 [[Element:RTBV|RTBV]]<br /> rect 314 593 379 609 [[Element:BRRV|BRRV]]<br /> rect 314 613 386 629 [[Element:SbCMV|SbCMV]]<br /> rect 314 632 378 648 [[Element:PCSV|PCSV]]<br /> rect 314 652 402 668 [[Element:CSVMV|CSVMV]]<br /> &lt;/imagemap&gt;<br /> |method=<br /> Phylogenetic reconstruction inferred based on the protease protein (AP) product encoded by the pol internal region of the ''Caulimoviridae'' family, and on a second non-pol protease-like domain encoded by the ORF7 of three soymoviruses and by the C-terminus of CSVMV-ORF I ''Cavemovirus'' (downstream to the MOV region) (highlighted in red). The tree has been realized using MEGA 4.1 ([[Literature:100597|Kumar ''et al.'' 2008]]) and the Neighbor joining (NJ) method of phylogenetic reconstruction ([[Literature:65737|Saitou and Nei 1987]]) with 100 bootstrap replicates under the conditions: uniform rates among sites and pairwise deletion of gaps. <br /> }}</div>

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