https://gydb.org/index.php?action=history&feed=atom&title=Phylogeny%3AAP_Ty1%2FCopia 2026-06-09T17:09:45Z Revision history for this page on the wiki MediaWiki 1.35.0 https://gydb.org/index.php?title=Phylogeny:AP_Ty1/Copia&diff=780&oldid=prev 2010-04-26T10:06:35Z

<p></p> <p><b>New page</b></p><div>[[Category:Phylogeny]]<br /> {{Phylogeny<br /> |map=&lt;imagemap&gt;<br /> Image:AP_ty1_copia.png|center<br /> rect 302 30 330 46 [[Element:Tse1|Tse1]]<br /> rect 302 48 329 64 [[Element:Ty1B|Ty1B]]<br /> rect 302 67 321 83 [[Element:Ty2|Ty2]]<br /> rect 302 12 328 28 [[Element:pCal|pCal]]<br /> rect 302 103 333 119 [[Element:Tkm1|Tkm1]]<br /> rect 302 122 321 138 [[Element:Ty4|Ty4]]<br /> rect 302 85 330 101 [[Element:Tdh2|Tdh2]]<br /> rect 302 158 347 174 [[Element:CoDi6.1|CoDi6.1]]<br /> rect 302 177 347 193 [[Element:CoDi6.7|CoDi6.7]]<br /> rect 302 140 347 156 [[Element:CoDi6.6|CoDi6.6]]<br /> rect 302 250 347 266 [[Element:CoDi4.4|CoDi4.4]]<br /> rect 302 268 347 284 [[Element:CoDi4.1|CoDi4.1]]<br /> rect 302 287 347 303 [[Element:CoDi4.5|CoDi4.5]]<br /> rect 302 305 347 321 [[Element:CoDi4.3|CoDi4.3]]<br /> rect 302 232 347 248 [[Element:CoDi3.1|CoDi3.1]]<br /> rect 302 213 347 229 [[Element:CoDi2.4|CoDi2.4]]<br /> rect 302 195 347 211 [[Element:CoDi7.1|CoDi7.1]]<br /> rect 302 397 347 413 [[Element:CoDi5.2|CoDi5.2]]<br /> rect 302 415 347 431 [[Element:CoDi5.3|CoDi5.3]]<br /> rect 302 378 347 394 [[Element:CoDi5.1|CoDi5.1]]<br /> rect 302 360 347 376 [[Element:CoDi5.6|CoDi5.6]]<br /> rect 302 342 347 358 [[Element:CoDi5.4|CoDi5.4]]<br /> rect 302 323 347 339 [[Element:CoDi5.5|CoDi5.5]]<br /> rect 302 488 336 504 [[Element:Zeco1|Zeco1]]<br /> rect 302 507 336 523 [[Element:Zeco2|Zeco2]]<br /> rect 302 470 334 486 [[Element:Olco1|Olco1]]<br /> rect 302 452 334 468 [[Element:Cico1|Cico1]]<br /> rect 302 433 343 449 [[Element:GalEa1|GalEa1]]<br /> rect 302 525 351 541 [[Element:Oryco1-1|Oryco1-1]]<br /> rect 302 543 330 559 [[Element:Poco|Poco]]<br /> rect 302 562 351 578 [[Element:Oryco1-2|Oryco1-2]]<br /> rect 302 580 349 596 [[Element:Vitico1-1|Vitico1-1]]<br /> rect 302 598 333 614 [[Element:Araco|Araco]]<br /> rect 302 617 361 633 [[Element:Endovir1-1|Endovir1-1]]<br /> rect 302 635 348 651 [[Element:SIRE1-4|SIRE1-4]]<br /> rect 302 672 339 688 [[Element:Opie-2|Opie-2]]<br /> rect 302 690 346 706 [[Element:ToRTL1|ToRTL1]]<br /> rect 302 653 331 669 [[Element:TSI-9|TSI-9]]<br /> rect 302 727 354 743 [[Element:Humnum|Humnum]]<br /> rect 302 763 335 779 [[Element:Copia|Copia]]<br /> rect 302 782 330 798 [[Element:Koco|Koco]]<br /> rect 302 745 355 761 [[Element:Yokozuna|Yokozuna]]<br /> rect 302 708 347 724 [[Element:CoDi6.5|CoDi6.5]]<br /> rect 302 1039 330 1055 [[Element:Fourf|Fourf]]<br /> rect 302 1075 337 1091 [[Element:Batata|Batata]]<br /> rect 302 1094 334 1110 [[Element:RTvr2|RTvr2]]<br /> rect 302 1112 326 1128 [[Element:Tto1|Tto1]]<br /> rect 302 1130 330 1146 [[Element:Tnt-1|Tnt-1]]<br /> rect 302 1149 323 1165 [[Element:V12|V12]]<br /> rect 302 1057 333 1073 [[Element:Tork4|Tork4]]<br /> rect 302 1167 349 1183 [[Element:Melmoth|Melmoth]]<br /> rect 302 1020 331 1036 [[Element:Sto-4|Sto-4]]<br /> rect 302 984 342 1000 [[Element:Mtanga|Mtanga]]<br /> rect 302 965 355 981 [[Element:PyRE1G1|PyRE1G1]]<br /> rect 302 1002 346 1018 [[Element:Tricopia|Tricopia]]<br /> rect 302 947 330 963 [[Element:1731|1731]]<br /> rect 302 929 350 945 [[Element:Xanthias|Xanthias]]<br /> rect 302 910 352 926 [[Element:Hydra1-2|Hydra1-2]]<br /> rect 302 892 352 908 [[Element:Hydra1-1|Hydra1-1]]<br /> rect 302 874 347 890 [[Element:CoDi6.4|CoDi6.4]]<br /> rect 302 855 347 871 [[Element:CoDi6.3|CoDi6.3]]<br /> rect 302 837 347 853 [[Element:CoDi6.2|CoDi6.2]]<br /> rect 302 818 346 834 [[Element:pCretro6|pCretro6]]<br /> rect 302 800 346 816 [[Element:pCretro3|pCretro3]]<br /> rect 302 1259 336 1275 [[Element:Osser|Osser]]<br /> rect 302 1204 341 1220 [[Element:Retrofit|Retrofit]]<br /> rect 302 1185 361 1201 [[Element:Hopscotch|Hopscotch]]<br /> rect 302 1222 334 1238 [[Element:Koala|Koala]]<br /> rect 302 1240 349 1256 [[Element:Vitico1-2|Vitico1-2]]<br /> &lt;/imagemap&gt;<br /> |method=<br /> Phylogenetic reconstruction inferred based on the protease protein (AP) product encoded by the pol internal region of the ''Ty1/Copia'' LTR retroelement family using CLUSTAL X 2.0 ([[Literature:100601|Larkin ''et al.'' 2007]]) and the Neighbor joining (NJ) method of phylogenetic reconstruction ([[Literature:65737|Saitou and Nei 1987]]) with 100 bootstrap replicates under the conditions: uniform rates among sites and pairwise deletion of gaps.<br /> }}</div>

imported>Ldominguez