https://gydb.org/index.php?action=history&feed=atom&title=Phylogeny%3AGAG_Ty1%2FCopia 2026-06-09T17:10:18Z Revision history for this page on the wiki MediaWiki 1.35.0 https://gydb.org/index.php?title=Phylogeny:GAG_Ty1/Copia&diff=782&oldid=prev 2010-04-27T09:09:25Z

<p></p> <p><b>New page</b></p><div>[[Category:Phylogeny]]<br /> {{Phylogeny<br /> |map=&lt;imagemap&gt;<br /> Image:GAG_ty1_copia.png|center<br /> rect 400 28 468 44 [[Element:Batata|Batata]]<br /> rect 400 45 457 61 [[Element:Tto1|Tto1]]<br /> rect 400 62 465 78 [[Element:RTvr2|RTvr2]]<br /> rect 400 78 454 94 [[Element:V12|V12]]<br /> rect 400 95 461 111 [[Element:Tnt-1|Tnt-1]]<br /> rect 400 112 464 128 [[Element:Tork4|Tork4]]<br /> rect 400 128 462 144 [[Element:Sto-4|Sto-4]]<br /> rect 400 145 461 161 [[Element:Fourf|Fourf]]<br /> rect 400 12 486 28 [[Element:PyRE1G1|PyRE1G1]]<br /> rect 400 162 485 178 [[Element:Humnum|Humnum]]<br /> rect 400 178 473 194 [[Element:Mtanga|Mtanga]]<br /> rect 400 195 486 211 [[Element:Yokozuna|Yokozuna]]<br /> rect 400 212 461 228 [[Element:Koco|Koco]]<br /> rect 400 228 466 244 [[Element:Copia|Copia]]<br /> rect 400 245 481 261 [[Element:Xanthias|Xanthias]]<br /> rect 400 262 461 278 [[Element:1731|1731]]<br /> rect 400 278 477 294 [[Element:Tricopia|Tricopia]]<br /> rect 400 295 477 311 [[Element:pCretro3|pCretro3]]<br /> rect 400 312 477 328 [[Element:pCretro6|pCretro6]]<br /> rect 400 328 483 344 [[Element:Hydra1-1|Hydra1-1]]<br /> rect 400 345 483 361 [[Element:Hydra1-2|Hydra1-2]]<br /> rect 400 362 478 378 [[Element:CoDi6.3|CoDi6.3]]<br /> rect 400 378 478 394 [[Element:CoDi6.2|CoDi6.2]]<br /> rect 400 395 478 411 [[Element:CoDi6.4|CoDi6.4]]<br /> rect 400 412 478 428 [[Element:CoDi6.5|CoDi6.5]]<br /> rect 400 428 479 444 [[Element:SIRE1-4|SIRE1-4]]<br /> rect 400 445 492 461 [[Element:Endovir1-1|Endovir1-1]]<br /> rect 400 478 470 494 [[Element:Opie-2|Opie-2]]<br /> rect 400 495 477 511 [[Element:ToRTL1|ToRTL1]]<br /> rect 400 462 462 478 [[Element:TSI-9|TSI-9]]<br /> rect 400 512 482 528 [[Element:Oryco1-2|Oryco1-2]]<br /> rect 400 528 464 544 [[Element:Araco|Araco]]<br /> rect 400 545 461 561 [[Element:Poco|Poco]]<br /> rect 400 562 482 578 [[Element:Oryco1-1|Oryco1-1]]<br /> rect 400 578 480 594 [[Element:Vitico1-1|Vitico1-1]]<br /> rect 400 595 480 611 [[Element:Vitico1-2|Vitico1-2]]<br /> rect 400 612 480 628 [[Element:Melmoth|Melmoth]]<br /> rect 400 628 472 644 [[Element:Retrofit|Retrofit]]<br /> rect 400 645 492 661 [[Element:Hopscotch|Hopscotch]]<br /> rect 400 662 465 678 [[Element:Koala|Koala]]<br /> rect 400 678 467 694 [[Element:Osser|Osser]]<br /> rect 400 695 474 711 [[Element:GalEa1|GalEa1]]<br /> rect 400 712 465 728 [[Element:Cico1|Cico1]]<br /> rect 400 728 465 744 [[Element:Olco1|Olco1]]<br /> rect 400 745 467 761 [[Element:Zeco1|Zeco1]]<br /> rect 400 762 467 778 [[Element:Zeco2|Zeco2]]<br /> rect 400 795 459 811 [[Element:pCal|pCal]]<br /> rect 400 812 461 828 [[Element:Tdh2|Tdh2]]<br /> rect 400 778 452 794 [[Element:Ty4|Ty4]]<br /> rect 400 829 461 845 [[Element:Tse1|Tse1]]<br /> rect 400 845 464 861 [[Element:Tkm1|Tkm1]]<br /> rect 400 862 460 878 [[Element:Ty1B|Ty1B]]<br /> rect 400 879 452 895 [[Element:Ty2|Ty2]]<br /> rect 400 895 478 911 [[Element:CoDi5.5|CoDi5.5]]<br /> rect 400 912 478 928 [[Element:CoDi5.6|CoDi5.6]]<br /> rect 400 929 478 945 [[Element:CoDi5.4|CoDi5.4]]<br /> rect 400 945 478 961 [[Element:CoDi5.1|CoDi5.1]]<br /> rect 400 962 478 978 [[Element:CoDi5.2|CoDi5.2]]<br /> rect 400 979 478 995 [[Element:CoDi5.3|CoDi5.3]]<br /> rect 400 995 478 1011 [[Element:CoDi6.6|CoDi6.6]]<br /> rect 400 1012 478 1028 [[Element:CoDi6.7|CoDi6.7]]<br /> rect 400 1029 478 1045 [[Element:CoDi6.1|CoDi6.1]]<br /> rect 400 1045 478 1061 [[Element:CoDi4.1|CoDi4.1]]<br /> rect 400 1062 478 1078 [[Element:CoDi2.4|CoDi2.4]]<br /> rect 400 1079 478 1095 [[Element:CoDi7.1|CoDi7.1]]<br /> rect 400 1095 478 1111 [[Element:CoDi4.5|CoDi4.5]]<br /> rect 400 1112 478 1128 [[Element:CoDi3.1|CoDi3.1]]<br /> rect 400 1129 478 1145 [[Element:CoDi4.3|CoDi4.3]]<br /> rect 400 1145 478 1161 [[Element:CoDi4.4|CoDi4.4]]<br /> &lt;/imagemap&gt;<br /> |method=<br /> Phylogenetic reconstruction inferred based on the gag polyprotein encoded by the ''Ty1/Copia'' LTR retroelement family using MEGA 4.1 ([[Literature:100597|Kumar ''et al.'' 2008]]) and the Neighbor joining (NJ) method of phylogenetic reconstruction ([[Literature:65737|Saitou and Nei 1987]]) with 100 bootstrap replicates under the conditions: uniform rates among sites and pairwise deletion of gaps. <br /> }}</div>

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