https://gydb.org/index.php?action=history&feed=atom&title=Phylogeny%3AGPYF_LTR_retroelements Phylogeny:GPYF LTR retroelements - Revision history 2026-06-09T16:15:19Z Revision history for this page on the wiki MediaWiki 1.35.0 https://gydb.org/index.php?title=Phylogeny:GPYF_LTR_retroelements&diff=874&oldid=prev imported>Lcovelli at 10:37, 27 November 2009 2009-11-27T10:37:49Z <p></p> <p><b>New page</b></p><div>[[Category:Phylogeny]]<br /> {{Phylogeny<br /> |map=&lt;imagemap&gt;<br /> Image:GPYF_ltr_retroelements.png|center<br /> rect 312 12 337 28 [[Element:Tor1|Tor1]]<br /> rect 312 25 333 41 [[Element:Ted|Ted]]<br /> rect 312 39 337 55 [[Element:Zam|Zam]]<br /> rect 312 53 331 69 [[Element:Tv1|Tv1]]<br /> rect 312 67 340 83 [[Element:Idefix|Idefix]]<br /> rect 312 81 337 97 [[Element:Tom|Tom]]<br /> rect 312 94 333 110 [[Element:297|297]]<br /> rect 312 108 336 124 [[Element:17.6|17.6]]<br /> rect 312 122 353 138 [[Element:Nomad|Nomad]]<br /> rect 312 136 357 152 [[Element:Burdock|Burdock]]<br /> rect 312 150 359 166 [[Element:Springer|Springer]]<br /> rect 312 163 357 179 [[Element:Gypsyvir|Gypsyvir]]<br /> rect 312 177 345 193 [[Element:Gypsy|Gypsy]]<br /> rect 312 191 381 207 [[Element:HMS-Beagle|HMS-Beagle]]<br /> rect 312 205 338 221 [[Element:Yoyo|Yoyo]]<br /> rect 312 219 350 235 [[Element:DrFV-1|DrFV-1]]<br /> rect 312 233 334 249 [[Element:BFV|BFV]]<br /> rect 312 246 334 262 [[Element:EFV|EFV]]<br /> rect 312 260 333 276 [[Element:FFV|FFV]]<br /> rect 312 274 335 290 [[Element:HFV|HFV]]<br /> rect 312 288 345 304 [[Element:SFV-1|SFV-1]]<br /> rect 312 302 371 318 [[Element:Grande1-4|Grande1-4]]<br /> rect 312 315 330 331 [[Element:BIV|BIV]]<br /> rect 312 329 337 345 [[Element:EIAV|EIAV]]<br /> rect 312 343 343 359 [[Element:CAEV|CAEV]]<br /> rect 312 357 335 373 [[Element:VMV|VMV]]<br /> rect 312 371 363 387 [[Element:SA-OMVV|SA-OMVV]]<br /> rect 312 385 342 401 [[Element:HIV-1|HIV-1]]<br /> rect 312 398 355 414 [[Element:SIVAGM|SIVAGM]]<br /> rect 312 412 357 428 [[Element:SIVMND|SIVMND]]<br /> rect 312 426 342 442 [[Element:HIV-2|HIV-2]]<br /> rect 312 440 355 456 [[Element:SIVMAC|SIVMAC]]<br /> rect 312 454 329 470 [[Element:FIV|FIV]]<br /> rect 312 467 363 483 [[Element:MuERV-L|MuERV-L]]<br /> rect 312 481 334 497 [[Element:BLV|BLV]]<br /> rect 312 495 353 511 [[Element:HTLV-2|HTLV-2]]<br /> rect 312 509 398 525 [[Element:STcLV2PP1664|STcLV2PP1664]]<br /> rect 312 523 353 539 [[Element:HTLV-1|HTLV-1]]<br /> rect 312 537 336 553 [[Element:RSV|RSV]]<br /> rect 312 550 343 566 [[Element:LPDV|LPDV]]<br /> rect 312 564 342 580 [[Element:JSRV|JSRV]]<br /> rect 312 578 357 594 [[Element:K-HERV|K-HERV]]<br /> rect 312 592 371 608 [[Element:HERV-K10|HERV-K10]]<br /> rect 312 606 345 622 [[Element:MPMV|MPMV]]<br /> rect 312 619 347 635 [[Element:SRV-1|SRV-1]]<br /> rect 312 633 344 649 [[Element:SERV|SERV]]<br /> rect 312 647 358 663 [[Element:SMRV-H|SMRV-H]]<br /> rect 312 661 344 677 [[Element:MMTV|MMTV]]<br /> rect 312 675 349 691 [[Element:PyERV|PyERV]]<br /> rect 312 689 357 705 [[Element:Ulysses|Ulysses]]<br /> rect 312 702 356 718 [[Element:RTVL-Ia|RTVL-Ia]]<br /> rect 312 716 344 732 [[Element:Pyggy|Pyggy]]<br /> rect 312 730 353 746 [[Element:Cereba|Cereba]]<br /> rect 312 744 333 760 [[Element:Tas|Tas]]<br /> rect 312 758 341 774 [[Element:Circe|Circe]]<br /> rect 312 771 351 787 [[Element:Sinbad|Sinbad]]<br /> rect 312 785 345 801 [[Element:SURL|SURL]]<br /> rect 312 799 346 815 [[Element:Cigr-1|Cigr-1]]<br /> rect 312 813 353 829 [[Element:Gulliver|Gulliver]]<br /> rect 312 827 335 843 [[Element:Mag|Mag]]<br /> rect 312 841 339 857 [[Element:Cer4|Cer4]]<br /> rect 312 854 339 870 [[Element:Cer5|Cer5]]<br /> rect 312 868 339 884 [[Element:Cer6|Cer6]]<br /> rect 312 882 337 898 [[Element:SPM|SPM]]<br /> rect 312 896 362 912 [[Element:Hydra2-1|Hydra2-1]]<br /> rect 312 910 344 926 [[Element:CFG1|CFG1]]<br /> rect 312 923 339 939 [[Element:DRM|DRM]]<br /> rect 312 937 341 953 [[Element:Ninja|Ninja]]<br /> rect 312 951 362 967 [[Element:Hydra3-1|Hydra3-1]]<br /> rect 312 965 357 981 [[Element:Cer10-1|Cer10-1]]<br /> rect 312 979 358 995 [[Element:Spirobel|Spirobel]]<br /> rect 312 993 345 1009 [[Element:Mabel|Mabel]]<br /> rect 312 1006 339 1022 [[Element:Cer7|Cer7]]<br /> rect 312 1020 347 1036 [[Element:Saci-6|Saci-6]]<br /> rect 312 1034 344 1050 [[Element:Kobel|Kobel]]<br /> rect 312 1048 343 1064 [[Element:Zebel|Zebel]]<br /> rect 312 1062 342 1078 [[Element:Tamy|Tamy]]<br /> rect 312 1075 345 1091 [[Element:Cubel|Cubel]]<br /> rect 312 1089 348 1105 [[Element:Purbel|Purbel]]<br /> rect 312 1103 339 1119 [[Element:Suzu|Suzu]]<br /> rect 312 1117 345 1133 [[Element:Gabel|Gabel]]<br /> rect 312 1131 335 1147 [[Element:Roo|Roo]]<br /> rect 312 1145 349 1161 [[Element:Moose|Moose]]<br /> rect 312 1158 343 1174 [[Element:Tribel|Tribel]]<br /> rect 312 1172 330 1188 [[Element:Bel|Bel]]<br /> rect 312 1186 345 1202 [[Element:Nabel|Nabel]]<br /> rect 312 1200 333 1216 [[Element:Max|Max]]<br /> rect 312 1214 343 1230 [[Element:SnRV|SnRV]]<br /> rect 312 1227 343 1243 [[Element:XEN1|XEN1]]<br /> rect 312 1241 361 1257 [[Element:ZFERV-2|ZFERV-2]]<br /> rect 312 1255 358 1271 [[Element:ASSBSV|ASSBSV]]<br /> rect 312 1269 350 1285 [[Element:ZFERV|ZFERV]]<br /> rect 312 1283 345 1299 [[Element:WdSV|WdSV]]<br /> rect 312 1297 357 1313 [[Element:HERV-E|HERV-E]]<br /> rect 312 1310 336 1326 [[Element:REV|REV]]<br /> rect 312 1324 351 1340 [[Element:BAEVM|BAEVM]]<br /> rect 312 1338 372 1354 [[Element:PERV-MSL|PERV-MSL]]<br /> rect 312 1352 343 1368 [[Element:MdEV|MdEV]]<br /> rect 312 1366 343 1382 [[Element:KoRV|KoRV]]<br /> rect 312 1379 342 1395 [[Element:GALV|GALV]]<br /> rect 312 1393 367 1409 [[Element:RCHO-K1|RCHO-K1]]<br /> rect 312 1407 340 1423 [[Element:FeLV|FeLV]]<br /> rect 312 1421 342 1437 [[Element:MuLV|MuLV]]<br /> rect 312 1435 339 1451 [[Element:Ogre|Ogre]]<br /> rect 312 1449 347 1465 [[Element:Tat4-1|Tat4-1]]<br /> rect 312 1462 332 1478 [[Element:Tft2|Tft2]]<br /> rect 312 1476 379 1492 [[Element:B1147A04.5|B1147A04.5]]<br /> rect 312 1490 348 1506 [[Element:RIRE2|RIRE2]]<br /> rect 312 1504 368 1520 [[Element:RetroSor1|RetroSor1]]<br /> rect 312 1518 355 1534 [[Element:Cinful-1|Cinful-1]]<br /> rect 312 1531 350 1547 [[Element:Bagy-2|Bagy-2]]<br /> rect 312 1545 363 1561 [[Element:Diaspora|Diaspora]]<br /> rect 312 1559 360 1575 [[Element:Athila4-1|Athila4-1]]<br /> rect 312 1573 357 1589 [[Element:Calypso|Calypso]]<br /> rect 312 1587 367 1603 [[Element:Cyclops-2|Cyclops-2]]<br /> rect 312 1601 364 1617 [[Element:Blastopia|Blastopia]]<br /> rect 312 1614 342 1630 [[Element:Mdg3|Mdg3]]<br /> rect 312 1628 358 1644 [[Element:Micropia|Micropia]]<br /> rect 312 1642 333 1658 [[Element:412|412]]<br /> rect 312 1656 342 1672 [[Element:Mdg1|Mdg1]]<br /> rect 312 1670 363 1686 [[Element:Boudicca|Boudicca]]<br /> rect 312 1683 353 1699 [[Element:CsRN1|CsRN1]]<br /> rect 312 1697 350 1713 [[Element:Kabuki|Kabuki]]<br /> rect 312 1711 362 1727 [[Element:G-Rhodo|G-Rhodo]]<br /> rect 312 1725 344 1741 [[Element:Tor4a|Tor4a]]<br /> rect 312 1739 333 1755 [[Element:TF1|TF1]]<br /> rect 312 1752 333 1768 [[Element:TF2|TF2]]<br /> rect 312 1766 362 1782 [[Element:Galadriel|Galadriel]]<br /> rect 312 1780 353 1796 [[Element:Monkey|Monkey]]<br /> rect 312 1794 354 1810 [[Element:Tntom1|Tntom1]]<br /> rect 312 1808 345 1824 [[Element:Reina|Reina]]<br /> rect 312 1822 341 1838 [[Element:Gimli|Gimli]]<br /> rect 312 1835 341 1851 [[Element:Gloin|Gloin]]<br /> rect 312 1849 332 1865 [[Element:Ifg7|Ifg7]]<br /> rect 312 1863 360 1879 [[Element:Peabody|Peabody]]<br /> rect 312 1877 370 1893 [[Element:Retrosat-2|Retrosat-2]]<br /> rect 312 1891 350 1907 [[Element:Bagy-1|Bagy-1]]<br /> rect 312 1904 331 1920 [[Element:Del|Del]]<br /> rect 312 1918 337 1934 [[Element:Tma|Tma]]<br /> rect 312 1932 357 1948 [[Element:Legolas|Legolas]]<br /> rect 312 1946 340 1962 [[Element:Woot|Woot]]<br /> rect 312 1960 357 1976 [[Element:Osvaldo|Osvaldo]]<br /> rect 312 1974 337 1990 [[Element:Tor2|Tor2]]<br /> rect 312 1987 339 2003 [[Element:Cer2|Cer2]]<br /> rect 312 2001 339 2017 [[Element:Cer3|Cer3]]<br /> rect 312 2015 354 2031 [[Element:Beetle1|Beetle1]]<br /> rect 312 2029 339 2045 [[Element:CRM|CRM]]<br /> rect 312 2043 339 2059 [[Element:Cer1|Cer1]]<br /> rect 312 2056 347 2072 [[Element:rGmr1|rGmr1]]<br /> rect 312 2070 343 2086 [[Element:Gmr1|Gmr1]]<br /> rect 312 2084 338 2100 [[Element:Cft-1|Cft-1]]<br /> rect 312 2098 348 2114 [[Element:marY1|marY1]]<br /> rect 312 2112 360 2128 [[Element:Amn-ichi|Amn-ichi]]<br /> rect 312 2126 362 2142 [[Element:Amn-san|Amn-san]]<br /> rect 312 2139 367 2155 [[Element:Sushi-ichi|Sushi-ichi]]<br /> rect 312 2153 351 2169 [[Element:Amn-ni|Amn-ni]]<br /> rect 312 2167 348 2183 [[Element:Skippy|Skippy]]<br /> rect 312 2181 342 2197 [[Element:Cgret|Cgret]]<br /> rect 312 2195 339 2211 [[Element:Pyret|Pyret]]<br /> rect 312 2208 347 2224 [[Element:Maggy|Maggy]]<br /> rect 312 2222 353 2238 [[Element:Dane-1|Dane-1]]<br /> rect 312 2236 338 2252 [[Element:Real|Real]]<br /> rect 312 2250 385 2266 [[Element:Grasshopper|Grasshopper]]<br /> rect 312 2264 354 2280 [[Element:Skipper|Skipper]]<br /> rect 312 2278 342 2294 [[Element:Ty3-1|Ty3-1]]<br /> rect 312 2291 340 2307 [[Element:Tse3|Tse3]]<br /> rect 312 2305 353 2321 [[Element:MGLR3|MGLR3]]<br /> &lt;/imagemap&gt;<br /> |method=<br /> Phylogenetic reconstruction inferred based on the GPYF module of the encoded integrase protein common to ''Ty3/Gypsy'', ''Retroviridae'', ''Bel/Pao'', ''Caulimoviridae'' and ''Ty1/Copia'' LTR retroelement families using MEGA 4.1 ([[Literature:100597|Kumar ''et al.'' 2008]]) and the Neighbor joining (NJ) method of phylogenetic reconstruction ([[Literature:65737|Saitou and Nei 1987]]) with 100 bootstrap replicates under the conditions, uniform rates among sites and pairwise deletion of gaps. <br /> }}</div> imported>Lcovelli