imported>Ldominguez at 09:42, 3 May 2010

2010-05-03T09:42:48Z

New page

[[Category:Phylogeny]]
{{Phylogeny
|map=<imagemap>
Image:INT_ltr_retroelements.png|center
rect 353 12 394 28 [[Element:GalEa1|GalEa1]]
rect 353 27 385 43 [[Element:Cico1|Cico1]]
rect 353 43 385 59 [[Element:Olco1|Olco1]]
rect 353 59 387 75 [[Element:Zeco1|Zeco1]]
rect 353 74 387 90 [[Element:Zeco2|Zeco2]]
rect 353 90 379 106 [[Element:pCal|pCal]]
rect 353 106 381 122 [[Element:Tdh2|Tdh2]]
rect 353 122 372 138 [[Element:Ty4|Ty4]]
rect 353 137 384 153 [[Element:Tkm1|Tkm1]]
rect 353 153 381 169 [[Element:Tse1|Tse1]]
rect 353 169 372 185 [[Element:Ty2|Ty2]]
rect 353 184 380 200 [[Element:Ty1B|Ty1B]]
rect 353 200 398 216 [[Element:CoDi5.6|CoDi5.6]]
rect 353 216 398 232 [[Element:CoDi5.1|CoDi5.1]]
rect 353 232 398 248 [[Element:CoDi5.2|CoDi5.2]]
rect 353 247 398 263 [[Element:CoDi5.3|CoDi5.3]]
rect 353 263 398 279 [[Element:CoDi5.4|CoDi5.4]]
rect 353 279 398 295 [[Element:CoDi5.5|CoDi5.5]]
rect 353 294 398 310 [[Element:CoDi7.1|CoDi7.1]]
rect 353 310 398 326 [[Element:CoDi2.4|CoDi2.4]]
rect 353 326 398 342 [[Element:CoDi3.1|CoDi3.1]]
rect 353 342 398 358 [[Element:CoDi4.4|CoDi4.4]]
rect 353 357 398 373 [[Element:CoDi4.1|CoDi4.1]]
rect 353 373 398 389 [[Element:CoDi4.3|CoDi4.3]]
rect 353 389 398 405 [[Element:CoDi4.5|CoDi4.5]]
rect 353 404 412 420 [[Element:Endovir1-1|Endovir1-1]]
rect 353 420 399 436 [[Element:SIRE1-4|SIRE1-4]]
rect 353 436 397 452 [[Element:ToRTL1|ToRTL1]]
rect 353 452 382 468 [[Element:TSI-9|TSI-9]]
rect 353 467 390 483 [[Element:Opie-2|Opie-2]]
rect 353 483 400 499 [[Element:Vitico1-2|Vitico1-2]]
rect 353 499 400 515 [[Element:Melmoth|Melmoth]]
rect 353 515 412 531 [[Element:Hopscotch|Hopscotch]]
rect 353 530 392 546 [[Element:Retrofit|Retrofit]]
rect 353 546 385 562 [[Element:Koala|Koala]]
rect 353 562 384 578 [[Element:Tork4|Tork4]]
rect 353 577 381 593 [[Element:Tnt-1|Tnt-1]]
rect 353 593 374 609 [[Element:V12|V12]]
rect 353 609 377 625 [[Element:Tto1|Tto1]]
rect 353 625 388 641 [[Element:Batata|Batata]]
rect 353 640 385 656 [[Element:RTvr2|RTvr2]]
rect 353 656 382 672 [[Element:Sto-4|Sto-4]]
rect 353 672 381 688 [[Element:Fourf|Fourf]]
rect 353 687 397 703 [[Element:Tricopia|Tricopia]]
rect 353 703 381 719 [[Element:1731|1731]]
rect 353 719 401 735 [[Element:Xanthias|Xanthias]]
rect 353 735 397 751 [[Element:pCretro3|pCretro3]]
rect 353 750 397 766 [[Element:pCretro6|pCretro6]]
rect 353 766 405 782 [[Element:Humnum|Humnum]]
rect 353 782 393 798 [[Element:Mtanga|Mtanga]]
rect 353 797 406 813 [[Element:Yokozuna|Yokozuna]]
rect 353 813 386 829 [[Element:Copia|Copia]]
rect 353 829 381 845 [[Element:Koco|Koco]]
rect 353 845 381 861 [[Element:Poco|Poco]]
rect 353 860 402 876 [[Element:Oryco1-1|Oryco1-1]]
rect 353 876 400 892 [[Element:Vitico1-1|Vitico1-1]]
rect 353 892 384 908 [[Element:Araco|Araco]]
rect 353 907 402 923 [[Element:Oryco1-2|Oryco1-2]]
rect 353 923 398 939 [[Element:CoDi6.6|CoDi6.6]]
rect 353 939 398 955 [[Element:CoDi6.1|CoDi6.1]]
rect 353 955 398 971 [[Element:CoDi6.7|CoDi6.7]]
rect 353 970 398 986 [[Element:CoDi6.4|CoDi6.4]]
rect 353 986 398 1002 [[Element:CoDi6.5|CoDi6.5]]
rect 353 1002 398 1018 [[Element:CoDi6.2|CoDi6.2]]
rect 353 1018 398 1034 [[Element:CoDi6.3|CoDi6.3]]
rect 353 1033 403 1049 [[Element:Hydra1-1|Hydra1-1]]
rect 353 1049 403 1065 [[Element:Hydra1-2|Hydra1-2]]
rect 353 1065 406 1081 [[Element:PyRE1G1|PyRE1G1]]
rect 353 1080 387 1096 [[Element:Osser|Osser]]
rect 353 1096 388 1112 [[Element:Saci-6|Saci-6]]
rect 353 1112 392 1128 [[Element:Sinbad|Sinbad]]
rect 353 1128 385 1144 [[Element:Kobel|Kobel]]
rect 353 1143 382 1159 [[Element:Ninja|Ninja]]
rect 353 1159 371 1175 [[Element:Bel|Bel]]
rect 353 1175 376 1191 [[Element:Roo|Roo]]
rect 353 1190 374 1206 [[Element:Max|Max]]
rect 353 1206 384 1222 [[Element:Tribel|Tribel]]
rect 353 1222 386 1238 [[Element:Nabel|Nabel]]
rect 353 1238 390 1254 [[Element:Moose|Moose]]
rect 353 1253 399 1269 [[Element:Spirobel|Spirobel]]
rect 353 1269 403 1285 [[Element:Hydra3-1|Hydra3-1]]
rect 353 1285 398 1301 [[Element:Cer10-1|Cer10-1]]
rect 353 1300 374 1316 [[Element:Tas|Tas]]
rect 353 1316 380 1332 [[Element:Cer7|Cer7]]
rect 353 1332 386 1348 [[Element:Mabel|Mabel]]
rect 353 1348 389 1364 [[Element:Purbel|Purbel]]
rect 353 1363 380 1379 [[Element:Suzu|Suzu]]
rect 353 1379 386 1395 [[Element:Gabel|Gabel]]
rect 353 1395 384 1411 [[Element:Zebel|Zebel]]
rect 353 1411 383 1427 [[Element:Tamy|Tamy]]
rect 353 1426 386 1442 [[Element:Cubel|Cubel]]
rect 353 1442 386 1458 [[Element:SURL|SURL]]
rect 353 1458 394 1474 [[Element:Gulliver|Gulliver]]
rect 353 1473 380 1489 [[Element:Cer4|Cer4]]
rect 353 1489 380 1505 [[Element:Cer6|Cer6]]
rect 353 1505 380 1521 [[Element:Cer5|Cer5]]
rect 353 1521 376 1537 [[Element:Mag|Mag]]
rect 353 1536 378 1552 [[Element:SPM|SPM]]
rect 353 1552 385 1568 [[Element:CFG1|CFG1]]
rect 353 1568 403 1584 [[Element:Hydra2-1|Hydra2-1]]
rect 353 1583 380 1599 [[Element:DRM|DRM]]
rect 353 1599 387 1615 [[Element:Cigr-1|Cigr-1]]
rect 353 1615 384 1631 [[Element:SnRV|SnRV]]
rect 353 1631 397 1647 [[Element:RTVL-Ia|RTVL-Ia]]
rect 353 1646 398 1662 [[Element:HERV-E|HERV-E]]
rect 353 1662 377 1678 [[Element:REV|REV]]
rect 353 1678 392 1694 [[Element:BAEVM|BAEVM]]
rect 353 1693 383 1709 [[Element:MuLV|MuLV]]
rect 353 1709 408 1725 [[Element:RCHO-K1|RCHO-K1]]
rect 353 1725 381 1741 [[Element:FeLV|FeLV]]
rect 353 1741 413 1757 [[Element:PERV-MSL|PERV-MSL]]
rect 353 1756 384 1772 [[Element:MdEV|MdEV]]
rect 353 1772 383 1788 [[Element:GALV|GALV]]
rect 353 1788 384 1804 [[Element:KoRV|KoRV]]
rect 353 1803 386 1819 [[Element:WdSV|WdSV]]
rect 353 1819 384 1835 [[Element:XEN1|XEN1]]
rect 353 1835 399 1851 [[Element:ASSBSV|ASSBSV]]
rect 353 1851 402 1867 [[Element:ZFERV-2|ZFERV-2]]
rect 353 1866 391 1882 [[Element:ZFERV|ZFERV]]
rect 353 1882 383 1898 [[Element:JSRV|JSRV]]
rect 353 1898 385 1914 [[Element:MMTV|MMTV]]
rect 353 1914 398 1930 [[Element:K-HERV|K-HERV]]
rect 353 1929 412 1945 [[Element:HERV-K10|HERV-K10]]
rect 353 1945 399 1961 [[Element:SMRV-H|SMRV-H]]
rect 353 1961 385 1977 [[Element:SERV|SERV]]
rect 353 1976 386 1992 [[Element:MPMV|MPMV]]
rect 353 1992 388 2008 [[Element:SRV-1|SRV-1]]
rect 353 2008 390 2024 [[Element:PyERV|PyERV]]
rect 353 2024 384 2040 [[Element:LPDV|LPDV]]
rect 353 2039 377 2055 [[Element:RSV|RSV]]
rect 353 2055 375 2071 [[Element:BLV|BLV]]
rect 353 2071 394 2087 [[Element:HTLV-1|HTLV-1]]
rect 353 2086 394 2102 [[Element:HTLV-2|HTLV-2]]
rect 353 2102 439 2118 [[Element:STcLV2PP1664|STcLV2PP1664]]
rect 353 2118 384 2134 [[Element:CAEV|CAEV]]
rect 353 2134 376 2150 [[Element:VMV|VMV]]
rect 353 2149 404 2165 [[Element:SA-OMVV|SA-OMVV]]
rect 353 2165 378 2181 [[Element:EIAV|EIAV]]
rect 353 2181 371 2197 [[Element:BIV|BIV]]
rect 353 2196 370 2212 [[Element:FIV|FIV]]
rect 353 2212 398 2228 [[Element:SIVMND|SIVMND]]
rect 353 2228 396 2244 [[Element:SIVAGM|SIVAGM]]
rect 353 2244 383 2260 [[Element:HIV-1|HIV-1]]
rect 353 2259 396 2275 [[Element:SIVMAC|SIVMAC]]
rect 353 2275 383 2291 [[Element:HIV-2|HIV-2]]
rect 353 2291 391 2307 [[Element:DrFV-1|DrFV-1]]
rect 353 2307 404 2323 [[Element:MuERV-L|MuERV-L]]
rect 353 2322 374 2338 [[Element:FFV|FFV]]
rect 353 2338 375 2354 [[Element:BFV|BFV]]
rect 353 2354 375 2370 [[Element:EFV|EFV]]
rect 353 2369 386 2385 [[Element:SFV-1|SFV-1]]
rect 353 2385 376 2401 [[Element:HFV|HFV]]
rect 353 2401 385 2417 [[Element:Tor4a|Tor4a]]
rect 353 2417 374 2433 [[Element:Ted|Ted]]
rect 353 2432 378 2448 [[Element:Zam|Zam]]
rect 353 2448 372 2464 [[Element:Tv1|Tv1]]
rect 353 2464 381 2480 [[Element:Idefix|Idefix]]
rect 353 2479 377 2495 [[Element:17.6|17.6]]
rect 353 2495 378 2511 [[Element:Tom|Tom]]
rect 353 2511 374 2527 [[Element:297|297]]
rect 353 2527 394 2543 [[Element:Nomad|Nomad]]
rect 353 2542 398 2558 [[Element:Burdock|Burdock]]
rect 353 2558 400 2574 [[Element:Springer|Springer]]
rect 353 2574 386 2590 [[Element:Gypsy|Gypsy]]
rect 353 2589 398 2605 [[Element:Gypsyvir|Gypsyvir]]
rect 353 2605 422 2621 [[Element:HMS-Beagle|HMS-Beagle]]
rect 353 2621 379 2637 [[Element:Yoyo|Yoyo]]
rect 353 2637 399 2653 [[Element:Micropia|Micropia]]
rect 353 2652 405 2668 [[Element:Blastopia|Blastopia]]
rect 353 2668 383 2684 [[Element:Mdg3|Mdg3]]
rect 353 2684 378 2700 [[Element:Tor2|Tor2]]
rect 353 2699 378 2715 [[Element:Tor1|Tor1]]
rect 353 2715 388 2731 [[Element:rGmr1|rGmr1]]
rect 353 2731 384 2747 [[Element:Gmr1|Gmr1]]
rect 353 2747 398 2763 [[Element:Osvaldo|Osvaldo]]
rect 353 2762 381 2778 [[Element:Woot|Woot]]
rect 353 2778 382 2794 [[Element:Circe|Circe]]
rect 353 2794 398 2810 [[Element:Ulysses|Ulysses]]
rect 353 2810 396 2826 [[Element:Cinful-1|Cinful-1]]
rect 353 2825 409 2841 [[Element:RetroSor1|RetroSor1]]
rect 353 2841 420 2857 [[Element:B1147A04.5|B1147A04.5]]
rect 353 2857 389 2873 [[Element:RIRE2|RIRE2]]
rect 353 2872 412 2888 [[Element:Grande1-4|Grande1-4]]
rect 353 2888 380 2904 [[Element:Ogre|Ogre]]
rect 353 2904 373 2920 [[Element:Tft2|Tft2]]
rect 353 2920 388 2936 [[Element:Tat4-1|Tat4-1]]
rect 353 2935 391 2951 [[Element:Bagy-2|Bagy-2]]
rect 353 2951 401 2967 [[Element:Athila4-1|Athila4-1]]
rect 353 2967 404 2983 [[Element:Diaspora|Diaspora]]
rect 353 2982 398 2998 [[Element:Calypso|Calypso]]
rect 353 2998 408 3014 [[Element:Cyclops-2|Cyclops-2]]
rect 353 3014 391 3030 [[Element:Kabuki|Kabuki]]
rect 353 3030 394 3046 [[Element:CsRN1|CsRN1]]
rect 353 3045 404 3061 [[Element:Boudicca|Boudicca]]
rect 353 3061 380 3077 [[Element:Cer1|Cer1]]
rect 353 3077 380 3093 [[Element:Cer3|Cer3]]
rect 353 3092 380 3108 [[Element:Cer2|Cer2]]
rect 353 3108 383 3124 [[Element:Mdg1|Mdg1]]
rect 353 3124 374 3140 [[Element:412|412]]
rect 353 3140 403 3156 [[Element:G-Rhodo|G-Rhodo]]
rect 353 3155 381 3171 [[Element:Tse3|Tse3]]
rect 353 3171 401 3187 [[Element:Peabody|Peabody]]
rect 353 3187 372 3203 [[Element:Del|Del]]
rect 353 3202 378 3218 [[Element:Tma|Tma]]
rect 353 3218 398 3234 [[Element:Legolas|Legolas]]
rect 353 3234 411 3250 [[Element:Retrosat-2|Retrosat-2]]
rect 353 3250 391 3266 [[Element:Bagy-1|Bagy-1]]
rect 353 3265 403 3281 [[Element:Galadriel|Galadriel]]
rect 353 3281 394 3297 [[Element:Monkey|Monkey]]
rect 353 3297 395 3313 [[Element:Tntom1|Tntom1]]
rect 353 3313 382 3329 [[Element:Gloin|Gloin]]
rect 353 3328 386 3344 [[Element:Reina|Reina]]
rect 353 3344 382 3360 [[Element:Gimli|Gimli]]
rect 353 3360 373 3376 [[Element:Ifg7|Ifg7]]
rect 353 3375 395 3391 [[Element:Beetle1|Beetle1]]
rect 353 3391 394 3407 [[Element:Cereba|Cereba]]
rect 353 3407 380 3423 [[Element:CRM|CRM]]
rect 353 3423 383 3439 [[Element:Ty3-1|Ty3-1]]
rect 353 3438 395 3454 [[Element:Skipper|Skipper]]
rect 353 3454 374 3470 [[Element:TF2|TF2]]
rect 353 3470 374 3486 [[Element:TF1|TF1]]
rect 353 3485 379 3501 [[Element:Cft-1|Cft-1]]
rect 353 3501 389 3517 [[Element:Skippy|Skippy]]
rect 353 3517 383 3533 [[Element:Cgret|Cgret]]
rect 353 3533 380 3549 [[Element:Pyret|Pyret]]
rect 353 3548 401 3564 [[Element:Amn-ichi|Amn-ichi]]
rect 353 3564 403 3580 [[Element:Amn-san|Amn-san]]
rect 353 3580 408 3596 [[Element:Sushi-ichi|Sushi-ichi]]
rect 353 3595 392 3611 [[Element:Amn-ni|Amn-ni]]
rect 353 3611 388 3627 [[Element:Maggy|Maggy]]
rect 353 3627 394 3643 [[Element:Dane-1|Dane-1]]
rect 353 3643 389 3659 [[Element:marY1|marY1]]
rect 353 3658 394 3674 [[Element:MGLR3|MGLR3]]
rect 353 3674 426 3690 [[Element:Grasshopper|Grasshopper]]
rect 353 3690 379 3706 [[Element:Real|Real]]
rect 353 3706 385 3722 [[Element:Pyggy|Pyggy]]
</imagemap>
|method=
Phylogenetic reconstruction inferred based on the integrase protein (INT) encoded by the pol internal region common to ''Ty3/Gypsy'', ''Retroviridae'', ''Bel/Pao'', ''Caulimoviridae'' and ''Ty1/Copia'' LTR retroelement families using MEGA 4.1 ([[Literature:100597|Kumar ''et al.'' 2008]]) and the Neighbor joining (NJ) method of phylogenetic reconstruction ([[Literature:65737|Saitou and Nei 1987]]) with 100 bootstrap replicates under the conditions, uniform rates among sites and pairwise deletion of gaps.
}}

Phylogeny:INT LTR retroelements - Revision history

imported>Ldominguez at 09:42, 3 May 2010