https://gydb.org/index.php?action=history&feed=atom&title=Phylogeny%3AINT_Ty1%2FCopia 2026-06-09T17:09:45Z Revision history for this page on the wiki MediaWiki 1.35.0 https://gydb.org/index.php?title=Phylogeny:INT_Ty1/Copia&diff=796&oldid=prev 2010-04-27T09:06:46Z

<p></p> <p><b>New page</b></p><div>[[Category:Phylogeny]]<br /> {{Phylogeny<br /> |map=&lt;imagemap&gt;<br /> Image:INT_ty1_copia.png|center<br /> rect 403 57 452 73 [[Element:Oryco1-1|Oryco1-1]]<br /> rect 403 42 434 58 [[Element:Araco|Araco]]<br /> rect 403 27 450 43 [[Element:Vitico1-1|Vitico1-1]]<br /> rect 403 12 452 28 [[Element:Oryco1-2|Oryco1-2]]<br /> rect 403 72 431 88 [[Element:Poco|Poco]]<br /> rect 403 87 462 103 [[Element:Endovir1-1|Endovir1-1]]<br /> rect 403 102 449 118 [[Element:SIRE1-4|SIRE1-4]]<br /> rect 403 118 447 134 [[Element:ToRTL1|ToRTL1]]<br /> rect 403 133 440 149 [[Element:Opie-2|Opie-2]]<br /> rect 403 148 432 164 [[Element:TSI-9|TSI-9]]<br /> rect 403 163 455 179 [[Element:Humnum|Humnum]]<br /> rect 403 178 443 194 [[Element:Mtanga|Mtanga]]<br /> rect 403 254 431 270 [[Element:Fourf|Fourf]]<br /> rect 403 239 432 255 [[Element:Sto-4|Sto-4]]<br /> rect 403 224 437 240 [[Element:Osser|Osser]]<br /> rect 403 193 456 209 [[Element:Yokozuna|Yokozuna]]<br /> rect 403 209 456 225 [[Element:PyRE1G1|PyRE1G1]]<br /> rect 403 269 438 285 [[Element:Batata|Batata]]<br /> rect 403 284 435 300 [[Element:RTvr2|RTvr2]]<br /> rect 403 299 427 315 [[Element:Tto1|Tto1]]<br /> rect 403 315 431 331 [[Element:Tnt-1|Tnt-1]]<br /> rect 403 330 424 346 [[Element:V12|V12]]<br /> rect 403 345 434 361 [[Element:Tork4|Tork4]]<br /> rect 403 360 436 376 [[Element:Copia|Copia]]<br /> rect 403 375 431 391 [[Element:Koco|Koco]]<br /> rect 403 390 450 406 [[Element:Melmoth|Melmoth]]<br /> rect 403 406 450 422 [[Element:Vitico1-2|Vitico1-2]]<br /> rect 403 421 462 437 [[Element:Hopscotch|Hopscotch]]<br /> rect 403 436 442 452 [[Element:Retrofit|Retrofit]]<br /> rect 403 451 435 467 [[Element:Koala|Koala]]<br /> rect 403 466 431 482 [[Element:1731|1731]]<br /> rect 403 481 451 497 [[Element:Xanthias|Xanthias]]<br /> rect 403 497 447 513 [[Element:Tricopia|Tricopia]]<br /> rect 403 512 447 528 [[Element:pCretro6|pCretro6]]<br /> rect 403 527 447 543 [[Element:pCretro3|pCretro3]]<br /> rect 403 542 453 558 [[Element:Hydra1-2|Hydra1-2]]<br /> rect 403 557 453 573 [[Element:Hydra1-1|Hydra1-1]]<br /> rect 403 572 448 588 [[Element:CoDi6.4|CoDi6.4]]<br /> rect 403 587 448 603 [[Element:CoDi6.5|CoDi6.5]]<br /> rect 403 603 448 619 [[Element:CoDi6.3|CoDi6.3]]<br /> rect 403 618 448 634 [[Element:CoDi6.2|CoDi6.2]]<br /> rect 403 633 448 649 [[Element:CoDi6.6|CoDi6.6]]<br /> rect 403 648 448 664 [[Element:CoDi6.1|CoDi6.1]]<br /> rect 403 663 448 679 [[Element:CoDi6.7|CoDi6.7]]<br /> rect 403 678 444 694 [[Element:GalEa1|GalEa1]]<br /> rect 403 694 435 710 [[Element:Cico1|Cico1]]<br /> rect 403 709 435 725 [[Element:Olco1|Olco1]]<br /> rect 403 724 437 740 [[Element:Zeco1|Zeco1]]<br /> rect 403 739 437 755 [[Element:Zeco2|Zeco2]]<br /> rect 403 754 429 770 [[Element:pCal|pCal]]<br /> rect 403 769 431 785 [[Element:Tdh2|Tdh2]]<br /> rect 403 785 422 801 [[Element:Ty4|Ty4]]<br /> rect 403 800 434 816 [[Element:Tkm1|Tkm1]]<br /> rect 403 815 431 831 [[Element:Tse1|Tse1]]<br /> rect 403 830 430 846 [[Element:Ty1B|Ty1B]]<br /> rect 403 845 422 861 [[Element:Ty2|Ty2]]<br /> rect 403 860 448 876 [[Element:CoDi5.4|CoDi5.4]]<br /> rect 403 875 448 891 [[Element:CoDi5.6|CoDi5.6]]<br /> rect 403 891 448 907 [[Element:CoDi5.5|CoDi5.5]]<br /> rect 403 906 448 922 [[Element:CoDi5.1|CoDi5.1]]<br /> rect 403 921 448 937 [[Element:CoDi5.2|CoDi5.2]]<br /> rect 403 936 448 952 [[Element:CoDi5.3|CoDi5.3]]<br /> rect 403 951 448 967 [[Element:CoDi4.1|CoDi4.1]]<br /> rect 403 966 448 982 [[Element:CoDi2.4|CoDi2.4]]<br /> rect 403 982 448 998 [[Element:CoDi7.1|CoDi7.1]]<br /> rect 403 997 448 1013 [[Element:CoDi3.1|CoDi3.1]]<br /> rect 403 1012 448 1028 [[Element:CoDi4.4|CoDi4.4]]<br /> rect 403 1027 448 1043 [[Element:CoDi4.5|CoDi4.5]]<br /> rect 403 1042 448 1058 [[Element:CoDi4.3|CoDi4.3]]<br /> &lt;/imagemap&gt;<br /> |method=<br /> Phylogenetic reconstruction inferred based on the integrase protein (INT) product encoded by the pol internal region of the ''Ty1/Copia'' LTR retroelement family using MEGA 4.1 ([[Literature:100597|Kumar ''et al.'' 2008]]) and the Neighbor joining (NJ) method of phylogenetic reconstruction ([[Literature:65737|Saitou and Nei 1987]]) with 100 bootstrap replicates under the conditions: uniform rates among sites and pairwise deletion of gaps.<br /> }}</div>

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