imported>Gydbwiki at 14:04, 1 August 2020

2020-08-01T14:04:34Z

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[[Category:Phylogeny]]
{{Phylogeny
|map=<imagemap>
Image:Pol_ltr_retroelement.png|center
rect 383 4004 430 4020 [[Element:Vitico1-2|Vitico1-2]]
rect 383 3989 430 4005 [[Element:Melmoth|Melmoth]]
rect 383 3973 420 3989 [[Element:Opie-2|Opie-2]]
rect 383 3957 429 3973 [[Element:SIRE1-4|SIRE1-4]]
rect 383 3925 427 3941 [[Element:ToRTL1|ToRTL1]]
rect 383 3893 412 3909 [[Element:Araco|Araco]]
rect 383 4191 415 4207 [[Element:RTvr2|RTvr2]]
rect 383 4175 407 4191 [[Element:Tto1|Tto1]]
rect 383 4159 404 4175 [[Element:V12|V12]]
rect 383 4050 415 4066 [[Element:Koala|Koala]]
rect 383 4034 422 4050 [[Element:Retrofit|Retrofit]]
rect 383 4019 442 4035 [[Element:Hopscotch|Hopscotch]]
rect 383 3942 442 3958 [[Element:Endovir1-1|Endovir1-1]]
rect 383 4144 418 4160 [[Element:Batata|Batata]]
rect 383 4128 411 4144 [[Element:Tnt-1|Tnt-1]]
rect 383 4113 414 4129 [[Element:Tork4|Tork4]]
rect 383 4097 412 4113 [[Element:Sto-4|Sto-4]]
rect 383 4081 411 4097 [[Element:Fourf|Fourf]]
rect 383 4066 417 4082 [[Element:Osser|Osser]]
rect 383 3614 428 3630 [[Element:CoDi6.2|CoDi6.2]]
rect 383 3598 428 3614 [[Element:CoDi6.3|CoDi6.3]]
rect 383 3582 428 3598 [[Element:CoDi6.5|CoDi6.5]]
rect 383 3567 428 3583 [[Element:CoDi6.4|CoDi6.4]]
rect 383 3521 428 3537 [[Element:CoDi6.6|CoDi6.6]]
rect 383 3552 428 3568 [[Element:CoDi6.7|CoDi6.7]]
rect 383 3537 428 3553 [[Element:CoDi6.1|CoDi6.1]]
rect 383 3505 428 3521 [[Element:CoDi7.1|CoDi7.1]]
rect 383 3489 428 3505 [[Element:CoDi2.4|CoDi2.4]]
rect 383 3442 428 3458 [[Element:CoDi4.5|CoDi4.5]]
rect 383 3426 428 3442 [[Element:CoDi3.1|CoDi3.1]]
rect 383 3411 428 3427 [[Element:CoDi4.1|CoDi4.1]]
rect 383 3473 428 3489 [[Element:CoDi4.3|CoDi4.3]]
rect 383 3457 428 3473 [[Element:CoDi4.4|CoDi4.4]]
rect 383 3396 411 3412 [[Element:Tdh2|Tdh2]]
rect 383 3380 409 3396 [[Element:pCal|pCal]]
rect 383 3018 422 3034 [[Element:Sinbad|Sinbad]]
rect 383 3003 415 3019 [[Element:Kobel|Kobel]]
rect 383 3629 436 3645 [[Element:Yokozuna|Yokozuna]]
rect 383 3049 414 3065 [[Element:Zebel|Zebel]]
rect 383 3365 402 3381 [[Element:Ty2|Ty2]]
rect 383 3350 410 3366 [[Element:Ty1B|Ty1B]]
rect 383 2848 404 2864 [[Element:Max|Max]]
rect 383 2988 416 3004 [[Element:Gabel|Gabel]]
rect 383 2879 429 2895 [[Element:Spirobel|Spirobel]]
rect 383 2911 410 2927 [[Element:Cer7|Cer7]]
rect 383 2972 410 2988 [[Element:Suzu|Suzu]]
rect 383 2895 433 2911 [[Element:Hydra3-1|Hydra3-1]]
rect 383 2786 420 2802 [[Element:Moose|Moose]]
rect 383 2957 419 2973 [[Element:Purbel|Purbel]]
rect 383 3065 416 3081 [[Element:Cubel|Cubel]]
rect 383 2942 404 2958 [[Element:Tas|Tas]]
rect 383 2926 416 2942 [[Element:Mabel|Mabel]]
rect 383 2801 414 2817 [[Element:Tribel|Tribel]]
rect 383 2863 401 2879 [[Element:Bel|Bel]]
rect 383 2770 428 2786 [[Element:Cer10-1|Cer10-1]]
rect 383 2833 406 2849 [[Element:Roo|Roo]]
rect 383 3034 418 3050 [[Element:Saci-6|Saci-6]]
rect 383 2817 416 2833 [[Element:Nabel|Nabel]]
rect 383 2599 414 2615 [[Element:LPDV|LPDV]]
rect 383 2693 413 2709 [[Element:JSRV|JSRV]]
rect 383 2708 429 2724 [[Element:SMRV-H|SMRV-H]]
rect 383 2723 415 2739 [[Element:SERV|SERV]]
rect 383 2615 407 2631 [[Element:RSV|RSV]]
rect 383 2584 424 2600 [[Element:HTLV-2|HTLV-2]]
rect 383 2568 469 2584 [[Element:STcLV2PP1664|STcLV2PP1664]]
rect 383 2754 418 2770 [[Element:SRV-1|SRV-1]]
rect 383 2739 416 2755 [[Element:MPMV|MPMV]]
rect 383 2662 428 2678 [[Element:K-HERV|K-HERV]]
rect 383 2552 424 2568 [[Element:HTLV-1|HTLV-1]]
rect 383 2677 415 2693 [[Element:MMTV|MMTV]]
rect 383 2537 405 2553 [[Element:BLV|BLV]]
rect 383 1534 418 1550 [[Element:Tat4-1|Tat4-1]]
rect 383 2630 420 2646 [[Element:PyERV|PyERV]]
rect 383 2646 442 2662 [[Element:HERV-K10|HERV-K10]]
rect 384 2145 439 2161 [[Element:RCHO-K1|RCHO-K1]]
rect 383 2521 434 2537 [[Element:SA-OMVV|SA-OMVV]]
rect 383 2207 432 2223 [[Element:ZFERV-2|ZFERV-2]]
rect 383 1378 411 1394 [[Element:Idefix|Idefix]]
rect 383 1425 408 1441 [[Element:Tom|Tom]]
rect 383 2409 413 2425 [[Element:HIV-1|HIV-1]]
rect 383 2362 408 2378 [[Element:EIAV|EIAV]]
rect 384 1800 411 1816 [[Element:Cer6|Cer6]]
rect 383 1581 426 1597 [[Element:Cinful-1|Cinful-1]]
rect 384 2164 414 2180 [[Element:MuLV|MuLV]]
rect 383 2315 404 2331 [[Element:FFV|FFV]]
rect 384 2083 415 2099 [[Element:MdEV|MdEV]]
rect 384 2114 414 2130 [[Element:GALV|GALV]]
rect 383 1346 408 1362 [[Element:Zam|Zam]]
rect 384 2067 444 2083 [[Element:PERV-MSL|PERV-MSL]]
rect 384 2130 412 2146 [[Element:FeLV|FeLV]]
rect 383 1612 442 1628 [[Element:Grande1-4|Grande1-4]]
rect 384 2098 415 2114 [[Element:KoRV|KoRV]]
rect 383 1596 450 1612 [[Element:B1147A04.5|B1147A04.5]]
rect 383 1565 439 1581 [[Element:RetroSor1|RetroSor1]]
rect 383 1440 421 1456 [[Element:Bagy-2|Bagy-2]]
rect 384 1098 430 1114 [[Element:Micropia|Micropia]]
rect 383 1362 402 1378 [[Element:Tv1|Tv1]]
rect 383 1284 416 1300 [[Element:Gypsy|Gypsy]]
rect 383 1409 404 1425 [[Element:297|297]]
rect 383 1471 431 1487 [[Element:Athila4-1|Athila4-1]]
rect 383 1315 409 1331 [[Element:Yoyo|Yoyo]]
rect 383 1331 404 1347 [[Element:Ted|Ted]]
rect 383 2253 434 2269 [[Element:MuERV-L|MuERV-L]]
rect 384 1205 414 1221 [[Element:Mdg1|Mdg1]]
rect 383 1393 407 1409 [[Element:17.6|17.6]]
rect 383 1487 438 1503 [[Element:Cyclops-2|Cyclops-2]]
rect 383 1549 403 1565 [[Element:Tft2|Tft2]]
rect 384 880 425 896 [[Element:ScBIMV|ScBIMV]]
rect 384 1189 405 1205 [[Element:412|412]]
rect 384 1114 436 1130 [[Element:Blastopia|Blastopia]]
rect 384 1130 414 1146 [[Element:Mdg3|Mdg3]]
rect 384 942 416 958 [[Element:CYMV|CYMV]]
rect 384 1083 414 1099 [[Element:KTSV|KTSV]]
rect 384 1005 416 1021 [[Element:CLNV|CLNV]]
rect 384 1052 421 1068 [[Element:BSVAV|BSVAV]]
rect 383 1518 410 1534 [[Element:Ogre|Ogre]]
rect 383 1629 419 1645 [[Element:RIRE2|RIRE2]]
rect 383 1503 428 1519 [[Element:Calypso|Calypso]]
rect 384 1036 421 1052 [[Element:BSMyV|BSMyV]]
rect 384 973 413 989 [[Element:DrMV|DrMV]]
rect 384 1067 423 1083 [[Element:BSOLV|BSOLV]]
rect 383 1300 452 1316 [[Element:HMS-Beagle|HMS-Beagle]]
rect 384 1236 429 1252 [[Element:Burdock|Burdock]]
rect 384 1020 423 1036 [[Element:BSGFV|BSGFV]]
rect 384 927 416 943 [[Element:CSSV|CSSV]]
rect 384 477 420 493 [[Element:marY1|marY1]]
rect 384 367 457 383 [[Element:Grasshopper|Grasshopper]]
rect 384 911 413 927 [[Element:TaBV|TaBV]]
rect 384 848 414 864 [[Element:TVCV|TVCV]]
rect 384 555 439 571 [[Element:Sushi-ichi|Sushi-ichi]]
rect 384 958 408 974 [[Element:DBV|DBV]]
rect 384 864 415 880 [[Element:RTBV|RTBV]]
rect 384 1220 425 1236 [[Element:Nomad|Nomad]]
rect 384 570 423 586 [[Element:Amn-ni|Amn-ni]]
rect 384 398 416 414 [[Element:Pyggy|Pyggy]]
rect 384 895 430 911 [[Element:BSCVBV|BsCVBV]]
rect 384 1145 411 1161 [[Element:Cer1|Cer1]]
rect 384 383 410 399 [[Element:Real|Real]]
rect 384 539 434 555 [[Element:Amn-san|Amn-san]]
rect 384 586 414 602 [[Element:Ty3-1|Ty3-1]]
rect 384 989 434 1005 [[Element:ComYMV|ComYMV]]
rect 384 523 432 539 [[Element:Amn-ichi|Amn-ichi]]
rect 384 461 411 477 [[Element:Pyret|Pyret]]
rect 384 492 425 508 [[Element:Dane-1|Dane-1]]
rect 384 211 425 227 [[Element:Cereba|Cereba]]
rect 384 430 420 446 [[Element:Skippy|Skippy]]
rect 384 320 405 336 [[Element:TF2|TF2]]
rect 384 336 405 352 [[Element:TF1|TF1]]
rect 384 602 426 618 [[Element:Skipper|Skipper]]
rect 384 352 425 368 [[Element:MGLR3|MGLR3]]
rect 384 164 404 180 [[Element:Ifg7|Ifg7]]
rect 384 117 422 133 [[Element:Bagy-1|Bagy-1]]
rect 384 148 413 164 [[Element:Gloin|Gloin]]
rect 384 258 425 274 [[Element:Monkey|Monkey]]
rect 384 414 410 430 [[Element:Cft-1|Cft-1]]
rect 384 508 419 524 [[Element:Maggy|Maggy]]
rect 384 133 417 149 [[Element:Reina|Reina]]
rect 384 242 426 258 [[Element:Tntom1|Tntom1]]
rect 384 445 414 461 [[Element:Cgret|Cgret]]
rect 384 24 412 40 [[Element:Tse3|Tse3]]
rect 384 195 426 211 [[Element:Beetle1|Beetle1]]
rect 384 180 413 196 [[Element:Gimli|Gimli]]
rect 384 289 417 305 [[Element:REM1|REM1]]
rect 384 835 424 851 [[Element:CSVMV|CSVMV]]
rect 383 1456 434 1472 [[Element:Diaspora|Diaspora]]
rect 384 710 421 726 [[Element:LLDAV|LLDAV]]
rect 384 647 423 663 [[Element:RuFDV|RuFDV]]
rect 384 616 416 632 [[Element:Tor4a|Tor4a]]
rect 384 273 434 289 [[Element:Galadriel|Galadriel]]
rect 384 1160 411 1176 [[Element:Cer2|Cer2]]
rect 384 70 409 86 [[Element:Tma|Tma]]
rect 384 55 432 71 [[Element:Peabody|Peabody]]
rect 384 227 411 243 [[Element:CRM|CRM]]
rect 384 679 415 695 [[Element:EVCV|EVCV]]
rect 384 305 434 321 [[Element:G-Rhodo|G-Rhodo]]
rect 384 632 415 648 [[Element:PVCV|PVCV]]
rect 384 757 412 773 [[Element:MiMV|MiMV]]
rect 384 726 417 742 [[Element:CERV|CERV]]
rect 384 819 434 835 [[Element:CmYLCV|CmYLCV]]
rect 384 102 442 118 [[Element:Retrosat-2|Retrosat-2]]
rect 384 741 407 757 [[Element:FMV|FMV]]
rect 384 694 416 710 [[Element:CaMV|CaMV]]
rect 384 39 403 55 [[Element:Del|Del]]
rect 384 772 416 788 [[Element:PCSV|PCSV]]
rect 384 663 414 679 [[Element:SVBV|SVBV]]
rect 384 1847 434 1863 [[Element:Hydra2-1|Hydra2-1]]
rect 384 1816 407 1832 [[Element:Mag|Mag]]
rect 384 1832 409 1848 [[Element:SPM|SPM]]
rect 384 804 417 820 [[Element:BRRV|BRRV]]
rect 384 86 429 102 [[Element:Legolas|Legolas]]
rect 383 1270 428 1286 [[Element:Gypsyvir|Gypsyvir]]
rect 383 1252 430 1268 [[Element:Springer|Springer]]
rect 384 1785 411 1801 [[Element:Cer5|Cer5]]
rect 384 1769 411 1785 [[Element:Cer4|Cer4]]
rect 384 1754 425 1770 [[Element:Gulliver|Gulliver]]
rect 384 1738 417 1754 [[Element:SURL|SURL]]
rect 384 788 424 804 [[Element:SbCMV|SbCMV]]
rect 384 1176 411 1192 [[Element:Cer3|Cer3]]
rect 384 1990 415 2006 [[Element:SnRV|SnRV]]
rect 384 1863 411 1879 [[Element:DRM|DRM]]
rect 384 1691 429 1707 [[Element:Osvaldo|Osvaldo]]
rect 384 2052 423 2068 [[Element:BAEVM|BAEVM]]
rect 384 1879 416 1895 [[Element:CFG1|CFG1]]
rect 384 2021 429 2037 [[Element:HERV-E|HERV-E]]
rect 384 2006 428 2022 [[Element:RTVL-Ia|RTVL-Ia]]
rect 384 1941 435 1957 [[Element:Boudicca|Boudicca]]
rect 384 1925 425 1941 [[Element:CsRN1|CsRN1]]
rect 384 1707 429 1723 [[Element:Ulysses|Ulysses]]
rect 383 1647 414 1663 [[Element:Gmr1|Gmr1]]
rect 384 1957 409 1973 [[Element:Tor2|Tor2]]
rect 384 1675 412 1691 [[Element:Woot|Woot]]
rect 384 1660 419 1676 [[Element:rGmr1|rGmr1]]
rect 384 2037 408 2053 [[Element:REV|REV]]
rect 384 1972 418 1988 [[Element:Cigr-1|Cigr-1]]
rect 384 1910 422 1926 [[Element:Kabuki|Kabuki]]
rect 384 1894 409 1910 [[Element:Tor1|Tor1]]
rect 384 1722 413 1738 [[Element:Circe|Circe]]
rect 383 2393 400 2409 [[Element:FIV|FIV]]
rect 383 2299 416 2315 [[Element:SFV-1|SFV-1]]
rect 383 2331 405 2347 [[Element:EFV|EFV]]
rect 383 2177 416 2193 [[Element:WdSV|WdSV]]
rect 383 2346 405 2362 [[Element:BFV|BFV]]
rect 383 2284 406 2300 [[Element:HFV|HFV]]
rect 383 2268 421 2284 [[Element:DrFV-1|DrFV-1]]
rect 383 2222 421 2238 [[Element:ZFERV|ZFERV]]
rect 383 2424 426 2440 [[Element:SIVAGM|SIVAGM]]
rect 383 2442 428 2458 [[Element:SIVMND|SIVMND]]
rect 383 2238 429 2254 [[Element:ASSBSV|ASSBSV]]
rect 383 2191 414 2207 [[Element:XEN1|XEN1]]
rect 383 3303 402 3319 [[Element:Ty4|Ty4]]
rect 383 2503 406 2519 [[Element:VMV|VMV]]
rect 383 2473 426 2489 [[Element:SIVMAC|SIVMAC]]
rect 383 2489 414 2505 [[Element:CAEV|CAEV]]
rect 383 2457 413 2473 [[Element:HIV-2|HIV-2]]
rect 383 2377 401 2393 [[Element:BIV|BIV]]
rect 383 3114 413 3130 [[Element:Tamy|Tamy]]
rect 383 3208 428 3224 [[Element:CoDi5.3|CoDi5.3]]
rect 383 3176 428 3192 [[Element:CoDi5.1|CoDi5.1]]
rect 383 3193 428 3209 [[Element:CoDi5.2|CoDi5.2]]
rect 383 3098 405 3114 [[Element:Pao|Pao]]
rect 383 3082 412 3098 [[Element:Ninja|Ninja]]
rect 383 3161 428 3177 [[Element:CoDi5.6|CoDi5.6]]
rect 383 3145 428 3161 [[Element:CoDi5.5|CoDi5.5]]
rect 383 3272 417 3288 [[Element:Zeco1|Zeco1]]
rect 383 3288 417 3304 [[Element:Zeco2|Zeco2]]
rect 383 3909 414 3925 [[Element:TSI-9|TSI-9]]
rect 383 3129 428 3145 [[Element:CoDi5.4|CoDi5.4]]
rect 383 3256 415 3272 [[Element:Olco1|Olco1]]
rect 383 3240 415 3256 [[Element:Cico1|Cico1]]
rect 383 3770 416 3786 [[Element:Copia|Copia]]
rect 383 3785 411 3801 [[Element:Koco|Koco]]
rect 383 3661 423 3677 [[Element:Mtanga|Mtanga]]
rect 383 3804 433 3820 [[Element:Hydra1-2|Hydra1-2]]
rect 383 3820 433 3836 [[Element:Hydra1-1|Hydra1-1]]
rect 383 3723 427 3739 [[Element:pCretro6|pCretro6]]
rect 383 3739 427 3755 [[Element:pCretro3|pCretro3]]
rect 383 3692 411 3708 [[Element:1731|1731]]
rect 383 3676 427 3692 [[Element:Tricopia|Tricopia]]
rect 383 3881 432 3897 [[Element:Oryco1-1|Oryco1-1]]
rect 383 3866 430 3882 [[Element:Vitico1-1|Vitico1-1]]
rect 383 3850 411 3866 [[Element:Poco|Poco]]
rect 383 3835 432 3851 [[Element:Oryco1-2|Oryco1-2]]
rect 383 3224 424 3240 [[Element:GalEa1|GalEa1]]
rect 383 3335 411 3351 [[Element:Tse1|Tse1]]
rect 383 3320 414 3336 [[Element:Tkm1|Tkm1]]
rect 383 3645 436 3661 [[Element:PyRE1G1|PyRE1G1]]
rect 383 3707 431 3723 [[Element:Xanthias|Xanthias]]
rect 383 3754 435 3770 [[Element:Humnum|Humnum]]
</imagemap>

|method=
Phylogenetic reconstruction inferred based on the concatenated protein product encoded by the pol internal region common to ''Ty3/Gypsy'', ''Retroviridae'', ''Bel/Pao'', ''Caulimoviridae'' and ''Ty1/Copia'' LTR retroelements families using MEGA 4.1 ([[Literature:100597|Kumar ''et al.'' 2008]]) and the Neighbor joining (NJ) method of phylogenetic reconstruction ([[Literature:65737|Saitou and Nei 1987]]) with 100 bootstrap replicates under the conditions uniform rates among sites and pairwise deletion of gaps.

}}

Phylogeny:POL LTR retroelements - Revision history

imported>Gydbwiki at 14:04, 1 August 2020