https://gydb.org/index.php?action=history&feed=atom&title=Phylogeny%3APOL_Ty1%2FCopia 2026-06-09T16:15:05Z Revision history for this page on the wiki MediaWiki 1.35.0 https://gydb.org/index.php?title=Phylogeny:POL_Ty1/Copia&diff=786&oldid=prev 2010-04-27T09:05:58Z

<p></p> <p><b>New page</b></p><div>[[Category:Phylogeny]]<br /> {{Phylogeny<br /> |map=&lt;imagemap&gt;<br /> Image:POL_ty1_copia.png|center<br /> rect 357 515 406 531 [[Element:Oryco1-1|Oryco1-1]]<br /> rect 357 495 404 511 [[Element:Melmoth|Melmoth]]<br /> rect 357 475 404 491 [[Element:Vitico1-2|Vitico1-2]]<br /> rect 357 454 389 470 [[Element:Koala|Koala]]<br /> rect 357 416 396 432 [[Element:Retrofit|Retrofit]]<br /> rect 357 396 389 412 [[Element:RTvr2|RTvr2]]<br /> rect 357 376 381 392 [[Element:Tto1|Tto1]]<br /> rect 357 355 392 371 [[Element:Batata|Batata]]<br /> rect 357 335 378 351 [[Element:V12|V12]]<br /> rect 357 315 385 331 [[Element:Tnt-1|Tnt-1]]<br /> rect 357 295 388 311 [[Element:Tork4|Tork4]]<br /> rect 358 36 406 52 [[Element:Xanthias|Xanthias]]<br /> rect 358 16 386 32 [[Element:1731|1731]]<br /> rect 357 54 401 70 [[Element:pCretro6|pCretro6]]<br /> rect 357 74 401 90 [[Element:pCretro3|pCretro3]]<br /> rect 357 94 401 110 [[Element:Tricopia|Tricopia]]<br /> rect 357 114 407 130 [[Element:Hydra1-2|Hydra1-2]]<br /> rect 357 135 407 151 [[Element:Hydra1-1|Hydra1-1]]<br /> rect 357 155 397 171 [[Element:Mtanga|Mtanga]]<br /> rect 357 175 409 191 [[Element:Humnum|Humnum]]<br /> rect 357 195 410 211 [[Element:Yokozuna|Yokozuna]]<br /> rect 357 215 390 231 [[Element:Copia|Copia]]<br /> rect 357 235 385 251 [[Element:Koco|Koco]]<br /> rect 357 256 385 272 [[Element:Fourf|Fourf]]<br /> rect 357 276 386 292 [[Element:Sto-4|Sto-4]]<br /> rect 357 435 416 451 [[Element:Hopscotch|Hopscotch]]<br /> rect 357 1018 385 1034 [[Element:Tdh2|Tdh2]]<br /> rect 357 998 383 1014 [[Element:pCal|pCal]]<br /> rect 357 978 391 994 [[Element:Zeco2|Zeco2]]<br /> rect 357 958 391 974 [[Element:Zeco1|Zeco1]]<br /> rect 357 938 389 954 [[Element:Olco1|Olco1]]<br /> rect 357 917 389 933 [[Element:Cico1|Cico1]]<br /> rect 357 796 402 812 [[Element:CoDi6.3|CoDi6.3]]<br /> rect 357 776 402 792 [[Element:CoDi6.5|CoDi6.5]]<br /> rect 357 756 402 772 [[Element:CoDi6.4|CoDi6.4]]<br /> rect 357 658 416 674 [[Element:Endovir1-1|Endovir1-1]]<br /> rect 357 638 401 654 [[Element:ToRTL1|ToRTL1]]<br /> rect 357 618 386 634 [[Element:TSI-9|TSI-9]]<br /> rect 357 598 406 614 [[Element:Oryco1-2|Oryco1-2]]<br /> rect 357 577 388 593 [[Element:Araco|Araco]]<br /> rect 357 557 404 573 [[Element:Vitico1-1|Vitico1-1]]<br /> rect 357 537 385 553 [[Element:Poco|Poco]]<br /> rect 357 677 403 693 [[Element:SIRE1-4|SIRE1-4]]<br /> rect 357 697 394 713 [[Element:Opie-2|Opie-2]]<br /> rect 357 718 410 734 [[Element:PyRE1G1|PyRE1G1]]<br /> rect 357 738 391 754 [[Element:Osser|Osser]]<br /> rect 357 815 402 831 [[Element:CoDi6.2|CoDi6.2]]<br /> rect 357 897 398 913 [[Element:GalEa1|GalEa1]]<br /> rect 357 877 402 893 [[Element:CoDi6.7|CoDi6.7]]<br /> rect 357 837 402 853 [[Element:CoDi6.6|CoDi6.6]]<br /> rect 357 857 402 873 [[Element:CoDi6.1|CoDi6.1]]<br /> rect 358 1262 403 1278 [[Element:CoDi2.4|CoDi2.4]]<br /> rect 358 1205 403 1221 [[Element:CoDi5.6|CoDi5.6]]<br /> rect 358 1185 403 1201 [[Element:CoDi5.1|CoDi5.1]]<br /> rect 358 1164 403 1180 [[Element:CoDi5.3|CoDi5.3]]<br /> rect 358 1144 403 1160 [[Element:CoDi5.2|CoDi5.2]]<br /> rect 358 1124 377 1140 [[Element:Ty2|Ty2]]<br /> rect 358 1104 385 1120 [[Element:Ty1B|Ty1B]]<br /> rect 358 1084 386 1100 [[Element:Tse1|Tse1]]<br /> rect 358 1064 389 1080 [[Element:Tkm1|Tkm1]]<br /> rect 358 1043 377 1059 [[Element:Ty4|Ty4]]<br /> rect 358 1224 403 1240 [[Element:CoDi5.4|CoDi5.4]]<br /> rect 358 1244 403 1260 [[Element:CoDi5.5|CoDi5.5]]<br /> rect 359 1283 404 1299 [[Element:CoDi7.1|CoDi7.1]]<br /> rect 359 1303 404 1319 [[Element:CoDi3.1|CoDi3.1]]<br /> rect 359 1323 404 1339 [[Element:CoDi4.1|CoDi4.1]]<br /> rect 359 1343 404 1359 [[Element:CoDi4.5|CoDi4.5]]<br /> rect 359 1363 404 1379 [[Element:CoDi4.4|CoDi4.4]]<br /> rect 359 1383 404 1399 [[Element:CoDi4.3|CoDi4.3]]<br /> &lt;/imagemap&gt;<br /> |method=<br /> Phylogenetic reconstruction inferred based on the concatenated protein product encoded by the pol internal region of the ''Ty1/Copia'' LTR retroelement family using MEGA 4.1 ([[Literature:100597|Kumar ''et al.'' 2008]]) and the Neighbor joining (NJ) method of phylogenetic reconstruction ([[Literature:65737|Saitou and Nei 1987]]) with 100 bootstrap replicates under the conditions, uniform rates among sites and pairwise deletion of gaps. <br /> }}</div>

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