imported>Gydbwiki at 08:51, 20 August 2010

2010-08-20T08:51:18Z

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[[Category:Phylogeny]]
{{Phylogeny
|map=<imagemap>
Image:RH_ltr_retroelements.png|center
rect 398 12 443 28 [[Element:CoDi6.6|CoDi6.6]]
rect 398 25 443 41 [[Element:CoDi6.1|CoDi6.1]]
rect 398 39 443 55 [[Element:CoDi6.7|CoDi6.7]]
rect 398 53 443 69 [[Element:CoDi6.2|CoDi6.2]]
rect 398 67 443 83 [[Element:CoDi6.3|CoDi6.3]]
rect 398 81 443 97 [[Element:CoDi6.4|CoDi6.4]]
rect 398 95 443 111 [[Element:CoDi6.5|CoDi6.5]]
rect 398 108 448 124 [[Element:Hydra1-1|Hydra1-1]]
rect 398 122 448 138 [[Element:Hydra1-2|Hydra1-2]]
rect 398 136 445 152 [[Element:Melmoth|Melmoth]]
rect 398 150 430 166 [[Element:Koala|Koala]]
rect 398 164 457 180 [[Element:Hopscotch|Hopscotch]]
rect 398 178 437 194 [[Element:Retrofit|Retrofit]]
rect 398 191 432 207 [[Element:Osser|Osser]]
rect 398 205 426 221 [[Element:Fourf|Fourf]]
rect 398 219 427 235 [[Element:Sto-4|Sto-4]]
rect 398 233 445 249 [[Element:Vitico1-2|Vitico1-2]]
rect 398 247 429 263 [[Element:Tork4|Tork4]]
rect 398 261 426 277 [[Element:Tnt-1|Tnt-1]]
rect 398 274 433 290 [[Element:Batata|Batata]]
rect 398 288 430 304 [[Element:RTvr2|RTvr2]]
rect 398 302 419 318 [[Element:V12|V12]]
rect 398 316 422 332 [[Element:Tto1|Tto1]]
rect 398 330 442 346 [[Element:pCretro3|pCretro3]]
rect 398 344 442 360 [[Element:pCretro6|pCretro6]]
rect 398 357 429 373 [[Element:Araco|Araco]]
rect 398 371 426 387 [[Element:Poco|Poco]]
rect 398 385 447 401 [[Element:Oryco1-1|Oryco1-1]]
rect 398 399 445 415 [[Element:Vitico1-1|Vitico1-1]]
rect 398 413 451 429 [[Element:Yokozuna|Yokozuna]]
rect 398 427 444 443 [[Element:SIRE1-4|SIRE1-4]]
rect 398 440 457 456 [[Element:Endovir1-1|Endovir1-1]]
rect 398 454 435 470 [[Element:Opie-2|Opie-2]]
rect 398 468 442 484 [[Element:ToRTL1|ToRTL1]]
rect 398 482 427 498 [[Element:TSI-9|TSI-9]]
rect 398 496 451 512 [[Element:PyRE1G1|PyRE1G1]]
rect 398 510 447 526 [[Element:Oryco1-2|Oryco1-2]]
rect 398 523 426 539 [[Element:Koco|Koco]]
rect 398 537 431 553 [[Element:Copia|Copia]]
rect 398 551 450 567 [[Element:Humnum|Humnum]]
rect 398 565 438 581 [[Element:Mtanga|Mtanga]]
rect 398 579 442 595 [[Element:Tricopia|Tricopia]]
rect 398 593 446 609 [[Element:Xanthias|Xanthias]]
rect 398 606 426 622 [[Element:1731|1731]]
rect 398 620 439 636 [[Element:GalEa1|GalEa1]]
rect 398 634 430 650 [[Element:Cico1|Cico1]]
rect 398 648 430 664 [[Element:Olco1|Olco1]]
rect 398 662 432 678 [[Element:Zeco1|Zeco1]]
rect 398 676 432 692 [[Element:Zeco2|Zeco2]]
rect 398 689 443 705 [[Element:CoDi5.6|CoDi5.6]]
rect 398 703 443 719 [[Element:CoDi5.5|CoDi5.5]]
rect 398 717 443 733 [[Element:CoDi5.4|CoDi5.4]]
rect 398 731 443 747 [[Element:CoDi5.1|CoDi5.1]]
rect 398 745 443 761 [[Element:CoDi5.2|CoDi5.2]]
rect 398 759 443 775 [[Element:CoDi5.3|CoDi5.3]]
rect 398 772 443 788 [[Element:CoDi7.1|CoDi7.1]]
rect 398 786 443 802 [[Element:CoDi2.4|CoDi2.4]]
rect 398 800 443 816 [[Element:CoDi4.1|CoDi4.1]]
rect 398 814 443 830 [[Element:CoDi3.1|CoDi3.1]]
rect 398 828 443 844 [[Element:CoDi4.4|CoDi4.4]]
rect 398 842 443 858 [[Element:CoDi4.3|CoDi4.3]]
rect 398 855 443 871 [[Element:CoDi4.5|CoDi4.5]]
rect 398 869 424 885 [[Element:pCal|pCal]]
rect 398 883 426 899 [[Element:Tdh2|Tdh2]]
rect 398 897 417 913 [[Element:Ty4|Ty4]]
rect 398 911 429 927 [[Element:Tkm1|Tkm1]]
rect 398 925 426 941 [[Element:Tse1|Tse1]]
rect 398 938 417 954 [[Element:Ty2|Ty2]]
rect 398 952 425 968 [[Element:Ty1B|Ty1B]]
rect 398 966 421 982 [[Element:Roo|Roo]]
rect 398 980 444 996 [[Element:Spirobel|Spirobel]]
rect 398 994 431 1010 [[Element:Mabel|Mabel]]
rect 398 1008 419 1024 [[Element:Tas|Tas]]
rect 398 1021 425 1037 [[Element:Cer7|Cer7]]
rect 398 1035 443 1051 [[Element:Cer10-1|Cer10-1]]
rect 398 1049 448 1065 [[Element:Hydra3-1|Hydra3-1]]
rect 398 1063 430 1079 [[Element:Kobel|Kobel]]
rect 398 1077 434 1093 [[Element:Purbel|Purbel]]
rect 398 1091 425 1107 [[Element:Suzu|Suzu]]
rect 398 1104 431 1120 [[Element:Gabel|Gabel]]
rect 398 1118 419 1134 [[Element:Max|Max]]
rect 398 1132 416 1148 [[Element:Bel|Bel]]
rect 398 1146 435 1162 [[Element:Moose|Moose]]
rect 398 1160 431 1176 [[Element:Nabel|Nabel]]
rect 398 1174 429 1190 [[Element:Tribel|Tribel]]
rect 398 1187 429 1203 [[Element:Zebel|Zebel]]
rect 398 1201 428 1217 [[Element:Tamy|Tamy]]
rect 398 1215 431 1231 [[Element:Cubel|Cubel]]
rect 398 1229 427 1245 [[Element:Ninja|Ninja]]
rect 398 1243 420 1259 [[Element:Pao|Pao]]
rect 398 1257 433 1273 [[Element:Saci-6|Saci-6]]
rect 398 1271 437 1287 [[Element:Sinbad|Sinbad]]
rect 398 1284 416 1300 [[Element:BIV|BIV]]
rect 398 1298 415 1314 [[Element:FIV|FIV]]
rect 398 1312 423 1328 [[Element:EIAV|EIAV]]
rect 398 1326 441 1342 [[Element:SIVAGM|SIVAGM]]
rect 398 1340 441 1356 [[Element:SIVMAC|SIVMAC]]
rect 398 1354 428 1370 [[Element:HIV-2|HIV-2]]
rect 398 1367 428 1383 [[Element:HIV-1|HIV-1]]
rect 398 1381 443 1397 [[Element:SIVMND|SIVMND]]
rect 398 1395 429 1411 [[Element:CAEV|CAEV]]
rect 398 1409 421 1425 [[Element:VMV|VMV]]
rect 398 1423 449 1439 [[Element:SA-OMVV|SA-OMVV]]
rect 398 1437 442 1453 [[Element:RTVL-Ia|RTVL-Ia]]
rect 398 1450 443 1466 [[Element:HERV-E|HERV-E]]
rect 398 1464 422 1480 [[Element:REV|REV]]
rect 398 1478 437 1494 [[Element:BAEVM|BAEVM]]
rect 398 1492 429 1508 [[Element:MdEV|MdEV]]
rect 398 1506 458 1522 [[Element:PERV-MSL|PERV-MSL]]
rect 398 1520 429 1536 [[Element:KoRV|KoRV]]
rect 398 1533 428 1549 [[Element:GALV|GALV]]
rect 398 1547 428 1563 [[Element:MuLV|MuLV]]
rect 398 1561 453 1577 [[Element:RCHO-K1|RCHO-K1]]
rect 398 1575 426 1591 [[Element:FeLV|FeLV]]
rect 398 1589 429 1605 [[Element:SnRV|SnRV]]
rect 398 1603 431 1619 [[Element:WdSV|WdSV]]
rect 398 1616 429 1632 [[Element:XEN1|XEN1]]
rect 398 1630 447 1646 [[Element:ZFERV-2|ZFERV-2]]
rect 398 1644 444 1660 [[Element:ASSBSV|ASSBSV]]
rect 398 1658 436 1674 [[Element:ZFERV|ZFERV]]
rect 398 1672 436 1688 [[Element:DrFV-1|DrFV-1]]
rect 398 1686 449 1702 [[Element:MuERV-L|MuERV-L]]
rect 398 1699 431 1715 [[Element:SFV-1|SFV-1]]
rect 398 1713 421 1729 [[Element:HFV|HFV]]
rect 398 1727 419 1743 [[Element:FFV|FFV]]
rect 398 1741 420 1757 [[Element:BFV|BFV]]
rect 398 1755 420 1771 [[Element:EFV|EFV]]
rect 398 1769 435 1785 [[Element:PyERV|PyERV]]
rect 398 1782 430 1798 [[Element:MMTV|MMTV]]
rect 398 1796 443 1812 [[Element:K-HERV|K-HERV]]
rect 398 1810 457 1826 [[Element:HERV-K10|HERV-K10]]
rect 398 1824 444 1840 [[Element:SMRV-H|SMRV-H]]
rect 398 1838 428 1854 [[Element:JSRV|JSRV]]
rect 398 1852 430 1868 [[Element:SERV|SERV]]
rect 398 1865 433 1881 [[Element:SRV-1|SRV-1]]
rect 398 1879 431 1895 [[Element:MPMV|MPMV]]
rect 398 1893 422 1909 [[Element:RSV|RSV]]
rect 398 1907 429 1923 [[Element:LPDV|LPDV]]
rect 398 1921 420 1937 [[Element:BLV|BLV]]
rect 398 1935 439 1951 [[Element:HTLV-1|HTLV-1]]
rect 398 1948 484 1964 [[Element:STcLV2PP1664|STcLV2PP1664]]
rect 398 1962 439 1978 [[Element:HTLV-2|HTLV-2]]
rect 398 1976 440 1992 [[Element:Skipper|Skipper]]
rect 398 1990 430 2006 [[Element:Tor4a|Tor4a]]
rect 398 2004 429 2020 [[Element:RTBV|RTBV]]
rect 398 2018 435 2034 [[Element:BSMyV|BSMyV]]
rect 398 2031 437 2047 [[Element:BSOLV|BSOLV]]
rect 398 2045 427 2061 [[Element:TaBV|TaBV]]
rect 398 2059 444 2075 [[Element:BsCVBV|BsCVBV]]
rect 398 2073 427 2089 [[Element:DrMV|DrMV]]
rect 398 2087 448 2103 [[Element:ComYMV|ComYMV]]
rect 398 2101 439 2117 [[Element:ScBIMV|ScBIMV]]
rect 398 2114 430 2130 [[Element:CSSV|CSSV]]
rect 398 2128 422 2144 [[Element:DBV|DBV]]
rect 398 2142 430 2158 [[Element:CYMV|CYMV]]
rect 398 2156 428 2172 [[Element:KTSV|KTSV]]
rect 398 2170 435 2186 [[Element:BSVAV|BSVAV]]
rect 398 2184 430 2200 [[Element:CLNV|CLNV]]
rect 398 2197 437 2213 [[Element:BSGFV|BSGFV]]
rect 398 2211 438 2227 [[Element:CSVMV|CSVMV]]
rect 398 2225 428 2241 [[Element:TVCV|TVCV]]
rect 398 2239 428 2255 [[Element:SVBV|SVBV]]
rect 398 2253 448 2269 [[Element:CmYLCV|CmYLCV]]
rect 398 2267 431 2283 [[Element:BRRV|BRRV]]
rect 398 2280 438 2296 [[Element:SbCMV|SbCMV]]
rect 398 2294 430 2310 [[Element:PCSV|PCSV]]
rect 398 2308 435 2324 [[Element:LLDAV|LLDAV]]
rect 398 2322 431 2338 [[Element:CERV|CERV]]
rect 398 2336 421 2352 [[Element:FMV|FMV]]
rect 398 2350 426 2366 [[Element:MiMV|MiMV]]
rect 398 2363 429 2379 [[Element:EVCV|EVCV]]
rect 398 2377 430 2393 [[Element:CaMV|CaMV]]
rect 398 2391 429 2407 [[Element:PVCV|PVCV]]
rect 398 2405 437 2421 [[Element:RuFDV|RuFDV]]
rect 398 2419 419 2435 [[Element:TF1|TF1]]
rect 398 2433 419 2449 [[Element:TF2|TF2]]
rect 398 2447 424 2463 [[Element:Cft-1|Cft-1]]
rect 398 2460 439 2476 [[Element:MGLR3|MGLR3]]
rect 398 2474 434 2490 [[Element:Skippy|Skippy]]
rect 398 2488 428 2504 [[Element:Cgret|Cgret]]
rect 398 2502 425 2518 [[Element:Pyret|Pyret]]
rect 398 2516 433 2532 [[Element:Maggy|Maggy]]
rect 398 2530 439 2546 [[Element:Dane-1|Dane-1]]
rect 398 2543 471 2559 [[Element:Grasshopper|Grasshopper]]
rect 398 2557 424 2573 [[Element:Real|Real]]
rect 398 2571 430 2587 [[Element:Pyggy|Pyggy]]
rect 398 2585 434 2601 [[Element:marY1|marY1]]
rect 398 2599 446 2615 [[Element:Amn-ichi|Amn-ichi]]
rect 398 2613 448 2629 [[Element:Amn-san|Amn-san]]
rect 398 2626 437 2642 [[Element:Amn-ni|Amn-ni]]
rect 398 2640 453 2656 [[Element:Sushi-ichi|Sushi-ichi]]
rect 398 2654 428 2670 [[Element:Ty3-1|Ty3-1]]
rect 398 2668 426 2684 [[Element:Tse3|Tse3]]
rect 398 2682 432 2698 [[Element:Cigr-1|Cigr-1]]
rect 398 2696 440 2712 [[Element:Beetle1|Beetle1]]
rect 398 2709 439 2725 [[Element:Cereba|Cereba]]
rect 398 2723 425 2739 [[Element:CRM|CRM]]
rect 398 2737 427 2753 [[Element:Gloin|Gloin]]
rect 398 2751 418 2767 [[Element:Ifg7|Ifg7]]
rect 398 2765 427 2781 [[Element:Gimli|Gimli]]
rect 398 2779 431 2795 [[Element:Reina|Reina]]
rect 398 2792 440 2808 [[Element:Tntom1|Tntom1]]
rect 398 2806 439 2822 [[Element:Monkey|Monkey]]
rect 398 2820 448 2836 [[Element:Galadriel|Galadriel]]
rect 398 2834 443 2850 [[Element:Legolas|Legolas]]
rect 398 2848 423 2864 [[Element:Tma|Tma]]
rect 398 2862 436 2878 [[Element:Bagy-1|Bagy-1]]
rect 398 2875 456 2891 [[Element:Retrosat-2|Retrosat-2]]
rect 398 2889 417 2905 [[Element:Del|Del]]
rect 398 2903 446 2919 [[Element:Peabody|Peabody]]
rect 398 2917 422 2933 [[Element:17.6|17.6]]
rect 398 2931 423 2947 [[Element:Tom|Tom]]
rect 398 2945 419 2961 [[Element:297|297]]
rect 398 2958 417 2974 [[Element:Tv1|Tv1]]
rect 398 2972 426 2988 [[Element:Idefix|Idefix]]
rect 398 2986 423 3002 [[Element:Zam|Zam]]
rect 398 3000 419 3016 [[Element:Ted|Ted]]
rect 398 3014 467 3030 [[Element:HMS-Beagle|HMS-Beagle]]
rect 398 3028 439 3044 [[Element:Nomad|Nomad]]
rect 398 3041 424 3057 [[Element:Yoyo|Yoyo]]
rect 398 3055 445 3071 [[Element:Springer|Springer]]
rect 398 3069 443 3085 [[Element:Burdock|Burdock]]
rect 398 3083 431 3099 [[Element:Gypsy|Gypsy]]
rect 398 3097 443 3113 [[Element:Gypsyvir|Gypsyvir]]
rect 398 3111 448 3127 [[Element:G-Rhodo|G-Rhodo]]
rect 398 3124 439 3140 [[Element:CsRN1|CsRN1]]
rect 398 3138 449 3154 [[Element:Boudicca|Boudicca]]
rect 398 3152 436 3168 [[Element:Kabuki|Kabuki]]
rect 398 3166 428 3182 [[Element:Mdg1|Mdg1]]
rect 398 3180 419 3196 [[Element:412|412]]
rect 398 3194 433 3210 [[Element:rGmr1|rGmr1]]
rect 398 3207 429 3223 [[Element:Gmr1|Gmr1]]
rect 398 3221 450 3237 [[Element:Blastopia|Blastopia]]
rect 398 3235 428 3251 [[Element:Mdg3|Mdg3]]
rect 398 3249 444 3265 [[Element:Micropia|Micropia]]
rect 398 3263 443 3279 [[Element:Osvaldo|Osvaldo]]
rect 398 3277 427 3293 [[Element:Circe|Circe]]
rect 398 3290 443 3306 [[Element:Ulysses|Ulysses]]
rect 398 3304 425 3320 [[Element:Ogre|Ogre]]
rect 398 3318 441 3334 [[Element:Cinful-1|Cinful-1]]
rect 398 3332 454 3348 [[Element:RetroSor1|RetroSor1]]
rect 398 3346 457 3362 [[Element:Grande1-4|Grande1-4]]
rect 398 3360 465 3376 [[Element:B1147A04.5|B1147A04.5]]
rect 398 3373 434 3389 [[Element:RIRE2|RIRE2]]
rect 398 3387 433 3403 [[Element:Tat4-1|Tat4-1]]
rect 398 3401 418 3417 [[Element:Tft2|Tft2]]
rect 398 3415 426 3431 [[Element:Woot|Woot]]
rect 398 3429 449 3445 [[Element:Diaspora|Diaspora]]
rect 398 3443 443 3459 [[Element:Calypso|Calypso]]
rect 398 3456 453 3472 [[Element:Cyclops-2|Cyclops-2]]
rect 398 3470 446 3486 [[Element:Athila4-1|Athila4-1]]
rect 398 3484 436 3500 [[Element:Bagy-2|Bagy-2]]
rect 398 3498 431 3514 [[Element:REM1|REM1]]
rect 398 3512 423 3528 [[Element:Tor2|Tor2]]
rect 398 3526 425 3542 [[Element:Cer1|Cer1]]
rect 398 3539 425 3555 [[Element:Cer2|Cer2]]
rect 398 3553 425 3569 [[Element:Cer3|Cer3]]
rect 398 3567 423 3583 [[Element:Tor1|Tor1]]
rect 398 3581 431 3597 [[Element:SURL|SURL]]
rect 398 3595 439 3611 [[Element:Gulliver|Gulliver]]
rect 398 3609 425 3625 [[Element:Cer5|Cer5]]
rect 398 3622 425 3638 [[Element:Cer4|Cer4]]
rect 398 3636 425 3652 [[Element:Cer6|Cer6]]
rect 398 3650 425 3666 [[Element:DRM|DRM]]
rect 398 3664 430 3680 [[Element:CFG1|CFG1]]
rect 398 3678 448 3694 [[Element:Hydra2-1|Hydra2-1]]
rect 398 3692 421 3708 [[Element:Mag|Mag]]
rect 398 3706 423 3722 [[Element:SPM|SPM]]
</imagemap>
|method=
Phylogenetic reconstruction inferred based on the ribonuclease H protein (RNaseH) encoded by the pol internal region common to ''Ty3/Gypsy'', ''Retroviridae'', ''Bel/Pao'', ''Caulimoviridae'' and ''Ty1/Copia'' LTR retroelement families using MEGA 4.1 ([[Literature:100597|Kumar ''et al.'' 2008]]) and the Neighbor joining (NJ) method of phylogenetic reconstruction ([[Literature:65737|Saitou and Nei 1987]]) with 100 bootstrap replicates under the conditions, uniform rates among sites and pairwise deletion of gaps.
}}

Phylogeny:RNaseH LTR retroelements - Revision history

imported>Gydbwiki at 08:51, 20 August 2010