imported>Gydbwiki at 11:21, 4 May 2010

2010-05-04T11:21:07Z

New page

[[Category:Phylogeny]]
{{Phylogeny
|map=<imagemap>
Image:RT_ltr_retroelements.png|center
rect 360 12 405 28 [[Element:CoDi5.6|CoDi5.6]]
rect 360 25 405 41 [[Element:CoDi5.1|CoDi5.1]]
rect 360 39 405 55 [[Element:CoDi5.3|CoDi5.3]]
rect 360 53 405 69 [[Element:CoDi5.2|CoDi5.2]]
rect 360 67 405 83 [[Element:CoDi5.5|CoDi5.5]]
rect 360 81 405 97 [[Element:CoDi5.4|CoDi5.4]]
rect 360 95 405 111 [[Element:CoDi2.4|CoDi2.4]]
rect 360 108 405 124 [[Element:CoDi7.1|CoDi7.1]]
rect 360 122 405 138 [[Element:CoDi4.1|CoDi4.1]]
rect 360 136 405 152 [[Element:CoDi4.4|CoDi4.4]]
rect 360 150 405 166 [[Element:CoDi4.3|CoDi4.3]]
rect 360 164 405 180 [[Element:CoDi3.1|CoDi3.1]]
rect 360 178 405 194 [[Element:CoDi4.5|CoDi4.5]]
rect 360 191 404 207 [[Element:ToRTL1|ToRTL1]]
rect 360 205 389 221 [[Element:TSI-9|TSI-9]]
rect 360 219 419 235 [[Element:Endovir1-1|Endovir1-1]]
rect 360 233 406 249 [[Element:SIRE1-4|SIRE1-4]]
rect 360 247 397 263 [[Element:Opie-2|Opie-2]]
rect 360 261 407 277 [[Element:Vitico1-1|Vitico1-1]]
rect 360 274 409 290 [[Element:Oryco1-1|Oryco1-1]]
rect 360 288 388 304 [[Element:Poco|Poco]]
rect 360 302 391 318 [[Element:Araco|Araco]]
rect 360 316 407 332 [[Element:Vitico1-2|Vitico1-2]]
rect 360 330 407 346 [[Element:Melmoth|Melmoth]]
rect 360 344 419 360 [[Element:Hopscotch|Hopscotch]]
rect 360 357 392 373 [[Element:Koala|Koala]]
rect 360 371 399 387 [[Element:Retrofit|Retrofit]]
rect 360 385 409 401 [[Element:Oryco1-2|Oryco1-2]]
rect 360 399 408 415 [[Element:Xanthias|Xanthias]]
rect 360 413 388 429 [[Element:1731|1731]]
rect 360 427 391 443 [[Element:Tork4|Tork4]]
rect 360 440 388 456 [[Element:Tnt-1|Tnt-1]]
rect 360 454 381 470 [[Element:V12|V12]]
rect 360 468 395 484 [[Element:Batata|Batata]]
rect 360 482 392 498 [[Element:RTvr2|RTvr2]]
rect 360 496 384 512 [[Element:Tto1|Tto1]]
rect 360 510 389 526 [[Element:Sto-4|Sto-4]]
rect 360 523 388 539 [[Element:Fourf|Fourf]]
rect 360 537 404 553 [[Element:Tricopia|Tricopia]]
rect 360 551 410 567 [[Element:Hydra1-1|Hydra1-1]]
rect 360 565 410 581 [[Element:Hydra1-2|Hydra1-2]]
rect 360 579 400 595 [[Element:Mtanga|Mtanga]]
rect 360 593 412 609 [[Element:Humnum|Humnum]]
rect 360 606 413 622 [[Element:Yokozuna|Yokozuna]]
rect 360 620 388 636 [[Element:Koco|Koco]]
rect 360 634 393 650 [[Element:Copia|Copia]]
rect 360 648 404 664 [[Element:pCretro3|pCretro3]]
rect 360 662 404 678 [[Element:pCretro6|pCretro6]]
rect 360 676 394 692 [[Element:Osser|Osser]]
rect 360 689 413 705 [[Element:PyRE1G1|PyRE1G1]]
rect 360 703 379 719 [[Element:Ty4|Ty4]]
rect 360 717 391 733 [[Element:Tkm1|Tkm1]]
rect 360 731 388 747 [[Element:Tse1|Tse1]]
rect 360 745 379 761 [[Element:Ty2|Ty2]]
rect 360 759 387 775 [[Element:Ty1B|Ty1B]]
rect 360 772 386 788 [[Element:pCal|pCal]]
rect 360 786 388 802 [[Element:Tdh2|Tdh2]]
rect 360 800 392 816 [[Element:Cico1|Cico1]]
rect 360 814 401 830 [[Element:GalEa1|GalEa1]]
rect 360 828 392 844 [[Element:Olco1|Olco1]]
rect 360 842 394 858 [[Element:Zeco2|Zeco2]]
rect 360 855 394 871 [[Element:Zeco1|Zeco1]]
rect 360 869 405 885 [[Element:CoDi6.2|CoDi6.2]]
rect 360 883 405 899 [[Element:CoDi6.3|CoDi6.3]]
rect 360 897 405 913 [[Element:CoDi6.4|CoDi6.4]]
rect 360 911 405 927 [[Element:CoDi6.5|CoDi6.5]]
rect 360 925 405 941 [[Element:CoDi6.6|CoDi6.6]]
rect 360 938 405 954 [[Element:CoDi6.7|CoDi6.7]]
rect 360 952 405 968 [[Element:CoDi6.1|CoDi6.1]]
rect 360 966 395 982 [[Element:Saci-6|Saci-6]]
rect 360 980 406 996 [[Element:Spirobel|Spirobel]]
rect 360 994 381 1010 [[Element:Tas|Tas]]
rect 360 1008 393 1024 [[Element:Mabel|Mabel]]
rect 360 1021 387 1037 [[Element:Cer7|Cer7]]
rect 360 1035 405 1051 [[Element:Cer10-1|Cer10-1]]
rect 360 1049 410 1065 [[Element:Hydra3-1|Hydra3-1]]
rect 360 1063 391 1079 [[Element:Zebel|Zebel]]
rect 360 1077 393 1093 [[Element:Cubel|Cubel]]
rect 360 1091 389 1107 [[Element:Ninja|Ninja]]
rect 360 1104 390 1120 [[Element:Tamy|Tamy]]
rect 360 1118 382 1134 [[Element:Pao|Pao]]
rect 360 1132 396 1148 [[Element:Purbel|Purbel]]
rect 360 1146 387 1162 [[Element:Suzu|Suzu]]
rect 360 1160 393 1176 [[Element:Gabel|Gabel]]
rect 360 1174 392 1190 [[Element:Kobel|Kobel]]
rect 360 1187 399 1203 [[Element:Sinbad|Sinbad]]
rect 360 1201 378 1217 [[Element:Bel|Bel]]
rect 360 1215 397 1231 [[Element:Moose|Moose]]
rect 360 1229 381 1245 [[Element:Max|Max]]
rect 360 1243 393 1259 [[Element:Nabel|Nabel]]
rect 360 1257 391 1273 [[Element:Tribel|Tribel]]
rect 360 1271 383 1287 [[Element:Roo|Roo]]
rect 360 1284 391 1300 [[Element:SnRV|SnRV]]
rect 360 1298 382 1314 [[Element:BLV|BLV]]
rect 360 1312 401 1328 [[Element:HTLV-1|HTLV-1]]
rect 360 1326 446 1342 [[Element:STcLV2PP1664|STcLV2PP1664]]
rect 360 1340 401 1356 [[Element:HTLV-2|HTLV-2]]
rect 360 1354 385 1370 [[Element:EIAV|EIAV]]
rect 360 1367 378 1383 [[Element:BIV|BIV]]
rect 360 1381 377 1397 [[Element:FIV|FIV]]
rect 360 1395 405 1411 [[Element:SIVMND|SIVMND]]
rect 360 1409 390 1425 [[Element:HIV-1|HIV-1]]
rect 360 1423 403 1439 [[Element:SIVAGM|SIVAGM]]
rect 360 1437 403 1453 [[Element:SIVMAC|SIVMAC]]
rect 360 1450 390 1466 [[Element:HIV-2|HIV-2]]
rect 360 1464 383 1480 [[Element:VMV|VMV]]
rect 360 1478 391 1494 [[Element:CAEV|CAEV]]
rect 360 1492 411 1508 [[Element:SA-OMVV|SA-OMVV]]
rect 360 1506 405 1522 [[Element:K-HERV|K-HERV]]
rect 360 1520 419 1536 [[Element:HERV-K10|HERV-K10]]
rect 360 1533 392 1549 [[Element:MMTV|MMTV]]
rect 360 1547 390 1563 [[Element:JSRV|JSRV]]
rect 360 1561 406 1577 [[Element:SMRV-H|SMRV-H]]
rect 360 1575 392 1591 [[Element:SERV|SERV]]
rect 360 1589 395 1605 [[Element:SRV-1|SRV-1]]
rect 360 1603 393 1619 [[Element:MPMV|MPMV]]
rect 360 1616 397 1632 [[Element:PyERV|PyERV]]
rect 360 1630 391 1646 [[Element:LPDV|LPDV]]
rect 360 1644 384 1660 [[Element:RSV|RSV]]
rect 360 1658 404 1674 [[Element:RTVL-Ia|RTVL-Ia]]
rect 360 1672 405 1688 [[Element:HERV-E|HERV-E]]
rect 360 1686 384 1702 [[Element:REV|REV]]
rect 360 1699 399 1715 [[Element:BAEVM|BAEVM]]
rect 360 1713 390 1729 [[Element:GALV|GALV]]
rect 360 1727 391 1743 [[Element:KoRV|KoRV]]
rect 360 1741 391 1757 [[Element:MdEV|MdEV]]
rect 360 1755 420 1771 [[Element:PERV-MSL|PERV-MSL]]
rect 360 1769 390 1785 [[Element:MuLV|MuLV]]
rect 360 1782 388 1798 [[Element:FeLV|FeLV]]
rect 360 1796 415 1812 [[Element:RCHO-K1|RCHO-K1]]
rect 360 1810 409 1826 [[Element:ZFERV-2|ZFERV-2]]
rect 360 1824 393 1840 [[Element:WdSV|WdSV]]
rect 360 1838 391 1854 [[Element:XEN1|XEN1]]
rect 360 1852 406 1868 [[Element:ASSBSV|ASSBSV]]
rect 360 1865 398 1881 [[Element:ZFERV|ZFERV]]
rect 360 1879 411 1895 [[Element:MuERV-L|MuERV-L]]
rect 360 1893 398 1909 [[Element:DrFV-1|DrFV-1]]
rect 360 1907 382 1923 [[Element:EFV|EFV]]
rect 360 1921 382 1937 [[Element:BFV|BFV]]
rect 360 1935 381 1951 [[Element:FFV|FFV]]
rect 360 1948 393 1964 [[Element:SFV-1|SFV-1]]
rect 360 1962 383 1978 [[Element:HFV|HFV]]
rect 360 1976 387 1992 [[Element:Cer1|Cer1]]
rect 360 1990 390 2006 [[Element:Ty3-1|Ty3-1]]
rect 360 2004 398 2020 [[Element:Kabuki|Kabuki]]
rect 360 2018 411 2034 [[Element:Boudicca|Boudicca]]
rect 360 2031 401 2047 [[Element:CsRN1|CsRN1]]
rect 360 2045 402 2061 [[Element:Skipper|Skipper]]
rect 360 2059 392 2075 [[Element:Tor4a|Tor4a]]
rect 360 2073 388 2089 [[Element:Tse3|Tse3]]
rect 360 2087 393 2103 [[Element:REM1|REM1]]
rect 360 2101 408 2117 [[Element:Peabody|Peabody]]
rect 360 2114 379 2130 [[Element:Del|Del]]
rect 360 2128 398 2144 [[Element:Bagy-1|Bagy-1]]
rect 360 2142 418 2158 [[Element:Retrosat-2|Retrosat-2]]
rect 360 2156 385 2172 [[Element:Tma|Tma]]
rect 360 2170 405 2186 [[Element:Legolas|Legolas]]
rect 360 2184 402 2200 [[Element:Tntom1|Tntom1]]
rect 360 2197 401 2213 [[Element:Monkey|Monkey]]
rect 360 2211 410 2227 [[Element:Galadriel|Galadriel]]
rect 360 2225 410 2241 [[Element:G-Rhodo|G-Rhodo]]
rect 360 2239 402 2255 [[Element:Beetle1|Beetle1]]
rect 360 2253 387 2269 [[Element:CRM|CRM]]
rect 360 2267 401 2283 [[Element:Cereba|Cereba]]
rect 360 2280 393 2296 [[Element:Reina|Reina]]
rect 360 2294 389 2310 [[Element:Gimli|Gimli]]
rect 360 2308 389 2324 [[Element:Gloin|Gloin]]
rect 360 2322 380 2338 [[Element:Ifg7|Ifg7]]
rect 360 2336 386 2352 [[Element:Cft-1|Cft-1]]
rect 360 2350 401 2366 [[Element:MGLR3|MGLR3]]
rect 360 2363 433 2379 [[Element:Grasshopper|Grasshopper]]
rect 360 2377 392 2393 [[Element:Pyggy|Pyggy]]
rect 360 2391 386 2407 [[Element:Real|Real]]
rect 360 2405 401 2421 [[Element:Dane-1|Dane-1]]
rect 360 2419 395 2435 [[Element:Maggy|Maggy]]
rect 360 2433 396 2449 [[Element:Skippy|Skippy]]
rect 360 2447 387 2463 [[Element:Pyret|Pyret]]
rect 360 2460 390 2476 [[Element:Cgret|Cgret]]
rect 360 2474 396 2490 [[Element:marY1|marY1]]
rect 360 2488 415 2504 [[Element:Sushi-ichi|Sushi-ichi]]
rect 360 2502 399 2518 [[Element:Amn-ni|Amn-ni]]
rect 360 2516 408 2532 [[Element:Amn-ichi|Amn-ichi]]
rect 360 2530 410 2546 [[Element:Amn-san|Amn-san]]
rect 360 2543 381 2559 [[Element:TF2|TF2]]
rect 360 2557 381 2573 [[Element:TF1|TF1]]
rect 360 2571 406 2587 [[Element:Micropia|Micropia]]
rect 360 2585 390 2601 [[Element:Mdg3|Mdg3]]
rect 360 2599 412 2615 [[Element:Blastopia|Blastopia]]
rect 360 2613 387 2629 [[Element:Ogre|Ogre]]
rect 360 2626 416 2642 [[Element:RetroSor1|RetroSor1]]
rect 360 2640 403 2656 [[Element:Cinful-1|Cinful-1]]
rect 360 2654 427 2670 [[Element:B1147A04.5|B1147A04.5]]
rect 360 2668 419 2684 [[Element:Grande1-4|Grande1-4]]
rect 360 2682 396 2698 [[Element:RIRE2|RIRE2]]
rect 360 2696 395 2712 [[Element:Tat4-1|Tat4-1]]
rect 360 2709 380 2725 [[Element:Tft2|Tft2]]
rect 360 2723 411 2739 [[Element:Diaspora|Diaspora]]
rect 360 2737 415 2753 [[Element:Cyclops-2|Cyclops-2]]
rect 360 2751 405 2767 [[Element:Calypso|Calypso]]
rect 360 2765 408 2781 [[Element:Athila4-1|Athila4-1]]
rect 360 2779 398 2795 [[Element:Bagy-2|Bagy-2]]
rect 360 2792 393 2808 [[Element:SURL|SURL]]
rect 360 2806 401 2822 [[Element:Gulliver|Gulliver]]
rect 360 2820 387 2836 [[Element:Cer4|Cer4]]
rect 360 2834 387 2850 [[Element:Cer5|Cer5]]
rect 360 2848 387 2864 [[Element:Cer6|Cer6]]
rect 360 2862 383 2878 [[Element:Mag|Mag]]
rect 360 2875 385 2891 [[Element:SPM|SPM]]
rect 360 2889 410 2905 [[Element:Hydra2-1|Hydra2-1]]
rect 360 2903 392 2919 [[Element:CFG1|CFG1]]
rect 360 2917 387 2933 [[Element:DRM|DRM]]
rect 360 2931 394 2947 [[Element:Cigr-1|Cigr-1]]
rect 360 2945 405 2961 [[Element:Ulysses|Ulysses]]
rect 360 2958 389 2974 [[Element:Circe|Circe]]
rect 360 2972 387 2988 [[Element:Cer2|Cer2]]
rect 360 2986 387 3002 [[Element:Cer3|Cer3]]
rect 360 3000 385 3016 [[Element:Tor2|Tor2]]
rect 360 3014 385 3030 [[Element:Tor1|Tor1]]
rect 360 3028 388 3044 [[Element:Woot|Woot]]
rect 360 3041 405 3057 [[Element:Osvaldo|Osvaldo]]
rect 360 3055 395 3071 [[Element:rGmr1|rGmr1]]
rect 360 3069 391 3085 [[Element:Gmr1|Gmr1]]
rect 360 3083 405 3099 [[Element:Burdock|Burdock]]
rect 360 3097 407 3113 [[Element:Springer|Springer]]
rect 360 3111 393 3127 [[Element:Gypsy|Gypsy]]
rect 360 3124 405 3140 [[Element:Gypsyvir|Gypsyvir]]
rect 360 3138 401 3154 [[Element:Nomad|Nomad]]
rect 360 3152 429 3168 [[Element:HMS-Beagle|HMS-Beagle]]
rect 360 3166 386 3182 [[Element:Yoyo|Yoyo]]
rect 360 3180 381 3196 [[Element:Ted|Ted]]
rect 360 3194 385 3210 [[Element:Zam|Zam]]
rect 360 3207 384 3223 [[Element:17.6|17.6]]
rect 360 3221 385 3237 [[Element:Tom|Tom]]
rect 360 3235 381 3251 [[Element:297|297]]
rect 360 3249 379 3265 [[Element:Tv1|Tv1]]
rect 360 3263 388 3279 [[Element:Idefix|Idefix]]
rect 360 3277 381 3293 [[Element:412|412]]
rect 360 3290 390 3306 [[Element:Mdg1|Mdg1]]
rect 360 3318 400 3334 [[Element:CSVMV|CSVMV]]
rect 360 3332 390 3348 [[Element:TVCV|TVCV]]
rect 360 3346 393 3362 [[Element:BRRV|BRRV]]
rect 360 3360 410 3376 [[Element:CmYLCV|CmYLCV]]
rect 360 3373 392 3389 [[Element:PCSV|PCSV]]
rect 360 3387 400 3403 [[Element:SbCMV|SbCMV]]
rect 360 3401 399 3417 [[Element:RuFDV|RuFDV]]
rect 360 3415 390 3431 [[Element:SVBV|SVBV]]
rect 360 3429 392 3445 [[Element:CaMV|CaMV]]
rect 360 3443 397 3459 [[Element:LLDAV|LLDAV]]
rect 360 3456 393 3472 [[Element:CERV|CERV]]
rect 360 3470 391 3486 [[Element:EVCV|EVCV]]
rect 360 3484 383 3500 [[Element:FMV|FMV]]
rect 360 3498 388 3514 [[Element:MiMV|MiMV]]
rect 360 3512 391 3528 [[Element:RTBV|RTBV]]
rect 360 3526 392 3542 [[Element:CSSV|CSSV]]
rect 360 3539 384 3555 [[Element:DBV|DBV]]
rect 360 3553 392 3569 [[Element:CYMV|CYMV]]
rect 360 3567 389 3583 [[Element:DrMV|DrMV]]
rect 360 3581 389 3597 [[Element:TaBV|TaBV]]
rect 360 3595 406 3611 [[Element:BsCVBV|BsCVBV]]
rect 360 3609 392 3625 [[Element:CLNV|CLNV]]
rect 360 3622 397 3638 [[Element:BSMyV|BSMyV]]
rect 360 3636 399 3652 [[Element:BSOLV|BSOLV]]
rect 360 3650 390 3666 [[Element:KTSV|KTSV]]
rect 360 3664 399 3680 [[Element:BSGFV|BSGFV]]
rect 360 3678 397 3694 [[Element:BSVAV|BSVAV]]
rect 360 3692 401 3708 [[Element:ScBIMV|ScBIMV]]
rect 360 3706 410 3722 [[Element:ComYMV|ComYMV]]
rect 360 3304 391 3320 [[Element:PVCV|PVCV]]
</imagemap>
|method=
Phylogenetic reconstruction inferred based on the LTR retroelemets reverse transcriptase using Felsenstein´s protein sequence parsimony method based on ([[Literature:19822|Eck and Dayhoff 1966]]) and ([[Literature:85508|Fitch 1971]]) to generate a majority-rule consensus tree ([[Literature:47231|Margush and McMorris 1981]]). As majority-rule consensus tree usually consists of all groups that occur more than 50% of the time, we take consensus values upper to 50 as an equivalent-bootstrapping reference.
}}

Phylogeny:RT LTR retroelements - Revision history

imported>Gydbwiki at 11:21, 4 May 2010