https://gydb.org/index.php?action=history&feed=atom&title=Phylogeny%3ART_Ty1%2FCopia 2026-06-09T16:14:38Z Revision history for this page on the wiki MediaWiki 1.35.0 https://gydb.org/index.php?title=Phylogeny:RT_Ty1/Copia&diff=794&oldid=prev 2010-04-27T09:04:30Z

<p></p> <p><b>New page</b></p><div>[[Category:Phylogeny]]<br /> {{Phylogeny<br /> |map=&lt;imagemap&gt;<br /> Image:RT_ty1_copia.png|center<br /> rect 423 445 468 461 [[Element:CoDi4.4|CoDi4.4]]<br /> rect 423 428 468 444 [[Element:CoDi4.3|CoDi4.3]]<br /> rect 423 462 468 478 [[Element:CoDi4.1|CoDi4.1]]<br /> rect 423 478 468 494 [[Element:CoDi4.5|CoDi4.5]]<br /> rect 423 495 468 511 [[Element:CoDi3.1|CoDi3.1]]<br /> rect 423 512 468 528 [[Element:CoDi2.4|CoDi2.4]]<br /> rect 423 528 468 544 [[Element:CoDi7.1|CoDi7.1]]<br /> rect 423 395 468 411 [[Element:CoDi5.2|CoDi5.2]]<br /> rect 423 378 468 394 [[Element:CoDi5.3|CoDi5.3]]<br /> rect 423 412 468 428 [[Element:CoDi5.1|CoDi5.1]]<br /> rect 423 345 468 361 [[Element:CoDi5.4|CoDi5.4]]<br /> rect 423 328 468 344 [[Element:CoDi5.5|CoDi5.5]]<br /> rect 423 362 468 378 [[Element:CoDi5.6|CoDi5.6]]<br /> rect 423 278 451 294 [[Element:Tse1|Tse1]]<br /> rect 423 262 450 278 [[Element:Ty1B|Ty1B]]<br /> rect 423 245 442 261 [[Element:Ty2|Ty2]]<br /> rect 423 295 454 311 [[Element:Tkm1|Tkm1]]<br /> rect 423 312 442 328 [[Element:Ty4|Ty4]]<br /> rect 423 228 449 244 [[Element:pCal|pCal]]<br /> rect 423 212 451 228 [[Element:Tdh2|Tdh2]]<br /> rect 423 145 457 161 [[Element:Zeco1|Zeco1]]<br /> rect 423 128 457 144 [[Element:Zeco2|Zeco2]]<br /> rect 423 162 455 178 [[Element:Olco1|Olco1]]<br /> rect 423 178 455 194 [[Element:Cico1|Cico1]]<br /> rect 423 195 464 211 [[Element:GalEa1|GalEa1]]<br /> rect 423 95 468 111 [[Element:CoDi6.1|CoDi6.1]]<br /> rect 423 78 468 94 [[Element:CoDi6.7|CoDi6.7]]<br /> rect 423 112 468 128 [[Element:CoDi6.6|CoDi6.6]]<br /> rect 423 62 468 78 [[Element:CoDi6.4|CoDi6.4]]<br /> rect 423 45 468 61 [[Element:CoDi6.5|CoDi6.5]]<br /> rect 423 28 468 44 [[Element:CoDi6.3|CoDi6.3]]<br /> rect 423 12 468 28 [[Element:CoDi6.2|CoDi6.2]]<br /> rect 423 545 476 561 [[Element:PyRE1G1|PyRE1G1]]<br /> rect 423 662 472 678 [[Element:Oryco1-1|Oryco1-1]]<br /> rect 423 645 451 661 [[Element:Poco|Poco]]<br /> rect 423 678 454 694 [[Element:Araco|Araco]]<br /> rect 423 695 470 711 [[Element:Vitico1-1|Vitico1-1]]<br /> rect 423 712 472 728 [[Element:Oryco1-2|Oryco1-2]]<br /> rect 423 628 482 644 [[Element:Endovir1-1|Endovir1-1]]<br /> rect 423 612 469 628 [[Element:SIRE1-4|SIRE1-4]]<br /> rect 423 595 460 611 [[Element:Opie-2|Opie-2]]<br /> rect 423 578 452 594 [[Element:TSI-9|TSI-9]]<br /> rect 423 562 467 578 [[Element:ToRTL1|ToRTL1]]<br /> rect 423 728 457 744 [[Element:Osser|Osser]]<br /> rect 423 795 462 811 [[Element:Retrofit|Retrofit]]<br /> rect 423 812 455 828 [[Element:Koala|Koala]]<br /> rect 423 778 482 794 [[Element:Hopscotch|Hopscotch]]<br /> rect 423 762 470 778 [[Element:Vitico1-2|Vitico1-2]]<br /> rect 423 745 470 761 [[Element:Melmoth|Melmoth]]<br /> rect 423 879 451 895 [[Element:Fourf|Fourf]]<br /> rect 423 979 458 995 [[Element:Batata|Batata]]<br /> rect 423 995 447 1011 [[Element:Tto1|Tto1]]<br /> rect 423 962 444 978 [[Element:V12|V12]]<br /> rect 423 945 455 961 [[Element:RTvr2|RTvr2]]<br /> rect 423 929 451 945 [[Element:Tnt-1|Tnt-1]]<br /> rect 423 912 454 928 [[Element:Tork4|Tork4]]<br /> rect 423 895 452 911 [[Element:Sto-4|Sto-4]]<br /> rect 423 862 467 878 [[Element:Tricopia|Tricopia]]<br /> rect 423 845 473 861 [[Element:Hydra1-2|Hydra1-2]]<br /> rect 423 829 473 845 [[Element:Hydra1-1|Hydra1-1]]<br /> rect 423 1012 463 1028 [[Element:Mtanga|Mtanga]]<br /> rect 423 1029 451 1045 [[Element:1731|1731]]<br /> rect 423 1045 471 1061 [[Element:Xanthias|Xanthias]]<br /> rect 423 1062 467 1078 [[Element:pCretro6|pCretro6]]<br /> rect 423 1079 467 1095 [[Element:pCretro3|pCretro3]]<br /> rect 423 1095 475 1111 [[Element:Humnum|Humnum]]<br /> rect 423 1112 456 1128 [[Element:Copia|Copia]]<br /> rect 423 1129 451 1145 [[Element:Koco|Koco]]<br /> rect 423 1145 476 1161 [[Element:Yokozuna|Yokozuna]]<br /> &lt;/imagemap&gt;<br /> |method=<br /> Phylogenetic reconstruction inferred based on the reverse transcriptase protein (RT) encoded by the pol internal region of the ''Ty1/Copia'' LTR retroelement family using CLUSTAL X 2.0 ([[Literature:100601|Larkin ''et al.'' 2007]]) and the Neighbor joining (NJ) method of phylogenetic reconstruction ([[Literature:65737|Saitou and Nei 1987]]) with 100 bootstrap replicates under the conditions: uniform rates among sites and pairwise deletion of gaps<br /> }}</div>

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