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Main

• Intro

SUPERFAMILIES

• Retroelements

SYSTEMS

• LTR Retroelements
• GIN/GINGER TRs and INTs

FAMILIES

• Ty3/Gypsy
• Retroviridae
• Bel/Pao
• Caulimoviridae
• Ty1/Copia
• GINA
• GINGER1
• GINGER2
• GINNY
• GINO
• IS3/IS481-like
• TDD
• CIN-1

CLASSIFIED ELEMENTS

• Elements

RELATED FAMILIES

• Clan AA
• GIN-1
• Chromodomains

TREES AND NETWORKS

• Phylogenetic trees
• CAARD

GyDB COLLECTION

• Multiple alignments
• HMM Profiles
• MRC sequences

REFSEQ DATABASES

• Cores Seq. DB
• Genome Seq. DB
• LTRs and TIRs Seq. DB

DOMAINS

• LTRs
• Gag
• Protease
• Reverse Transcriptase
• Ribonuclease H
• Integrase
• Envelope
• Retro-chromodomains
• dUTPase
• Accessory genes
• Aphid trans factor
• Movement protein
• Virus assoc protein

LAVRENTIEVA,I., KHIL,P., VINOGRADOVA,T., AKHMEDOV,A., LAPUK,A., SHAKHOVA,O., LEBEDEV,Y., MONASTYRSKAYA,G. AND E.D. SVERDLOV. 1998. Subfamilies and nearest-neighbour dendrogram for the LTRs of human endogenous retroviruses HERV-K mapped on human chromosome 19: physical neighbourhood does not correlate with identity level. Hum.Genet..102:107-116